Veterinary trypanocidal benzoxaboroles are peptidase-activated prodrugs

Livestock diseases caused by Trypanosoma congolense , T . vivax and T . brucei , collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under...

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Published inPLoS pathogens Vol. 16; no. 11; p. e1008932
Main Authors Giordani, Federica, Paape, Daniel, Vincent, Isabel M., Pountain, Andrew W., Fernández-Cortés, Fernando, Rico, Eva, Zhang, Ning, Morrison, Liam J., Freund, Yvonne, Witty, Michael J., Peter, Rosemary, Edwards, Darren Y., Wilkes, Jonathan M., van der Hooft, Justin J. J., Regnault, Clément, Read, Kevin D., Horn, David, Field, Mark C., Barrett, Michael P.
Format Journal Article
LanguageEnglish
Published United States Public Library of Science 03.11.2020
Public Library of Science (PLoS)
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ISSN1553-7374
1553-7366
1553-7374
DOI10.1371/journal.ppat.1008932

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Abstract Livestock diseases caused by Trypanosoma congolense , T . vivax and T . brucei , collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under veterinary development. Here, we show that the most efficacious subclass of these compounds are prodrugs activated by trypanosome serine carboxypeptidases (CBPs). Drug-resistance to a development candidate, AN11736, emerged readily in T . brucei , due to partial deletion within the locus containing three tandem copies of the CBP genes. T . congolense parasites, which possess a larger array of related CBPs , also developed resistance to AN11736 through deletion within the locus. A genome-scale screen in T . brucei confirmed CBP loss-of-function as the primary mechanism of resistance and CRISPR-Cas9 editing proved that partial deletion within the locus was sufficient to confer resistance. CBP re-expression in either T . brucei or T . congolense AN11736-resistant lines restored drug-susceptibility. CBPs act by cleaving the benzoxaborole AN11736 to a carboxylic acid derivative, revealing a prodrug activation mechanism. Loss of CBP activity results in massive reduction in net uptake of AN11736, indicating that entry is facilitated by the concentration gradient created by prodrug metabolism.
AbstractList In Trypanosoma brucei treated with acoziborole, metabolomics experiments revealed a profound change in methionine metabolism [22], that may relate to RNA processing defects, given multi-methylation of the spliced leader sequence used for trans-splicing by trypanosomatids [23]. A trypanocidal benzoxaborole, of the amino-methyl subclass, was shown to be subject to two-step metabolic processing, involving a primary conversion by an amine oxidase in host serum to an aldehyde, that is further metabolised to a carboxylate via T. brucei aldehyde dehydrogenase [24]. Resistant trypanosomes share genetic changes in a tandem array of serine carboxypeptidase (CBP) genes Genome sequencing of the two T. brucei resistant clones TbOXR_A and TbOXR_C revealed a notable reduction of read depth in a region on chromosome 10 where a tandem repeat of the three serine peptidases TbCBP1A, TbCBP1B and TbCBP1C (Tb927.10.1030–1050 respectively) is present (Fig 2A). (B) Coverage plot as in (A) but with T. congolense wild type (both parent, TcoWT, and high passage, TcoWT_HP) and AN11736-resistant lines (TcoOXR_A, TcoOXR_B). https://doi.org/10.1371/journal.ppat.1008932.g002 Genome sequencing of the T. congolense resistant clones TcoOXR_B and TcoOXR_C and the parent lines (TcoWT, cultured for a limited number of passages, and TcoWT_HP, high passage, maintained in culture for the same time required for drug resistance selection), revealed reduced read coverage across the syntenic region of chromosome 10.
In Trypanosoma brucei treated with acoziborole, metabolomics experiments revealed a profound change in methionine metabolism [22], that may relate to RNA processing defects, given multi-methylation of the spliced leader sequence used for trans-splicing by trypanosomatids [23]. A trypanocidal benzoxaborole, of the amino-methyl subclass, was shown to be subject to two-step metabolic processing, involving a primary conversion by an amine oxidase in host serum to an aldehyde, that is further metabolised to a carboxylate via T. brucei aldehyde dehydrogenase [24]. Resistant trypanosomes share genetic changes in a tandem array of serine carboxypeptidase (CBP) genes Genome sequencing of the two T. brucei resistant clones TbOXR_A and TbOXR_C revealed a notable reduction of read depth in a region on chromosome 10 where a tandem repeat of the three serine peptidases TbCBP1A, TbCBP1B and TbCBP1C (Tb927.10.1030–1050 respectively) is present (Fig 2A). (B) Coverage plot as in (A) but with T. congolense wild type (both parent, TcoWT, and high passage, TcoWT_HP) and AN11736-resistant lines (TcoOXR_A, TcoOXR_B). https://doi.org/10.1371/journal.ppat.1008932.g002 Genome sequencing of the T. congolense resistant clones TcoOXR_B and TcoOXR_C and the parent lines (TcoWT, cultured for a limited number of passages, and TcoWT_HP, high passage, maintained in culture for the same time required for drug resistance selection), revealed reduced read coverage across the syntenic region of chromosome 10.
Livestock diseases caused by Trypanosoma congolense , T . vivax and T . brucei , collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under veterinary development. Here, we show that the most efficacious subclass of these compounds are prodrugs activated by trypanosome serine carboxypeptidases (CBPs). Drug-resistance to a development candidate, AN11736, emerged readily in T . brucei , due to partial deletion within the locus containing three tandem copies of the CBP genes. T . congolense parasites, which possess a larger array of related CBPs , also developed resistance to AN11736 through deletion within the locus. A genome-scale screen in T . brucei confirmed CBP loss-of-function as the primary mechanism of resistance and CRISPR-Cas9 editing proved that partial deletion within the locus was sufficient to confer resistance. CBP re-expression in either T . brucei or T . congolense AN11736-resistant lines restored drug-susceptibility. CBPs act by cleaving the benzoxaborole AN11736 to a carboxylic acid derivative, revealing a prodrug activation mechanism. Loss of CBP activity results in massive reduction in net uptake of AN11736, indicating that entry is facilitated by the concentration gradient created by prodrug metabolism.
Livestock diseases caused by Trypanosoma congolense, T. vivax and T. brucei, collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under veterinary development. Here, we show that the most efficacious subclass of these compounds are prodrugs activated by trypanosome serine carboxypeptidases (CBPs). Drug-resistance to a development candidate, AN11736, emerged readily in T. brucei, due to partial deletion within the locus containing three tandem copies of the CBP genes. T. congolense parasites, which possess a larger array of related CBPs, also developed resistance to AN11736 through deletion within the locus. A genome-scale screen in T. brucei confirmed CBP loss-of-function as the primary mechanism of resistance and CRISPR-Cas9 editing proved that partial deletion within the locus was sufficient to confer resistance. CBP re-expression in either T. brucei or T. congolense AN11736-resistant lines restored drug-susceptibility. CBPs act by cleaving the benzoxaborole AN11736 to a carboxylic acid derivative, revealing a prodrug activation mechanism. Loss of CBP activity results in massive reduction in net uptake of AN11736, indicating that entry is facilitated by the concentration gradient created by prodrug metabolism.
Livestock diseases caused by Trypanosoma congolense , T . vivax and T . brucei , collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under veterinary development. Here, we show that the most efficacious subclass of these compounds are prodrugs activated by trypanosome serine carboxypeptidases (CBPs). Drug-resistance to a development candidate, AN11736, emerged readily in T . brucei , due to partial deletion within the locus containing three tandem copies of the CBP genes. T . congolense parasites, which possess a larger array of related CBPs , also developed resistance to AN11736 through deletion within the locus. A genome-scale screen in T . brucei confirmed CBP loss-of-function as the primary mechanism of resistance and CRISPR-Cas9 editing proved that partial deletion within the locus was sufficient to confer resistance. CBP re-expression in either T . brucei or T . congolense AN11736-resistant lines restored drug-susceptibility. CBPs act by cleaving the benzoxaborole AN11736 to a carboxylic acid derivative, revealing a prodrug activation mechanism. Loss of CBP activity results in massive reduction in net uptake of AN11736, indicating that entry is facilitated by the concentration gradient created by prodrug metabolism. AN11736 is a member of the benzoxaborole class identified as a development candidate for animal African trypanosomiasis, a deadly livestock disease with huge economic impact. As part of its early evaluation phase, we set to unravel the risk and mode of resistance to this new trypanocide. We discovered that AN11736 behaves as a prodrug that, once inside trypanosomes, is cleaved by the activity of specific serine carboxypeptidases. AN11736-resistant Trypanosoma brucei and T . congolense had deletions within the serine carboxypeptidase gene array, resulting in their being unable to efficiently process the parent drug. Other benzoxaboroles with a similar sub-structure are also substrates for the serine carboxypeptidases, hence our findings assume great importance in considering the future development and deployment of this class of compounds.
Livestock diseases caused by Trypanosoma congolense, T. vivax and T. brucei, collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under veterinary development. Here, we show that the most efficacious subclass of these compounds are prodrugs activated by trypanosome serine carboxypeptidases (CBPs). Drug-resistance to a development candidate, AN11736, emerged readily in T. brucei, due to partial deletion within the locus containing three tandem copies of the CBP genes. T. congolense parasites, which possess a larger array of related CBPs, also developed resistance to AN11736 through deletion within the locus. A genome-scale screen in T. brucei confirmed CBP loss-of-function as the primary mechanism of resistance and CRISPR-Cas9 editing proved that partial deletion within the locus was sufficient to confer resistance. CBP re-expression in either T. brucei or T. congolense AN11736-resistant lines restored drug-susceptibility. CBPs act by cleaving the benzoxaborole AN11736 to a carboxylic acid derivative, revealing a prodrug activation mechanism. Loss of CBP activity results in massive reduction in net uptake of AN11736, indicating that entry is facilitated by the concentration gradient created by prodrug metabolism.Livestock diseases caused by Trypanosoma congolense, T. vivax and T. brucei, collectively known as nagana, are responsible for billions of dollars in lost food production annually. There is an urgent need for novel therapeutics. Encouragingly, promising antitrypanosomal benzoxaboroles are under veterinary development. Here, we show that the most efficacious subclass of these compounds are prodrugs activated by trypanosome serine carboxypeptidases (CBPs). Drug-resistance to a development candidate, AN11736, emerged readily in T. brucei, due to partial deletion within the locus containing three tandem copies of the CBP genes. T. congolense parasites, which possess a larger array of related CBPs, also developed resistance to AN11736 through deletion within the locus. A genome-scale screen in T. brucei confirmed CBP loss-of-function as the primary mechanism of resistance and CRISPR-Cas9 editing proved that partial deletion within the locus was sufficient to confer resistance. CBP re-expression in either T. brucei or T. congolense AN11736-resistant lines restored drug-susceptibility. CBPs act by cleaving the benzoxaborole AN11736 to a carboxylic acid derivative, revealing a prodrug activation mechanism. Loss of CBP activity results in massive reduction in net uptake of AN11736, indicating that entry is facilitated by the concentration gradient created by prodrug metabolism.
Audience Academic
Author Paape, Daniel
Read, Kevin D.
van der Hooft, Justin J. J.
Horn, David
Freund, Yvonne
Edwards, Darren Y.
Witty, Michael J.
Regnault, Clément
Rico, Eva
Fernández-Cortés, Fernando
Peter, Rosemary
Barrett, Michael P.
Morrison, Liam J.
Giordani, Federica
Vincent, Isabel M.
Wilkes, Jonathan M.
Field, Mark C.
Pountain, Andrew W.
Zhang, Ning
AuthorAffiliation University of Geneva, SWITZERLAND
8 Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
7 Current address: Bioinformatics Group, Wageningen University, Wageningen, the Netherlands
6 Glasgow Polyomics, Institute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom
1 Wellcome Centre for Integrative Parasitology, Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, United Kingdom
4 Anacor Pharmaceuticals, Inc., Palo Alto, California, United States of America
2 Wellcome Centre for Anti-Infectives Research, School of Life Sciences, University of Dundee, Dundee, United Kingdom
3 Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, United Kingdom
5 Global Alliance for Livestock and Veterinary Medicine, Pentlands Science Park, Penicuik, Edinburgh, United Kingdom
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/33141865$$D View this record in MEDLINE/PubMed
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2020 Giordani et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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DocumentTitleAlternate Peptidase-activated trypanocidal benzoxaboroles
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Snippet Livestock diseases caused by Trypanosoma congolense , T . vivax and T . brucei , collectively known as nagana, are responsible for billions of dollars in lost...
Livestock diseases caused by Trypanosoma congolense, T. vivax and T. brucei, collectively known as nagana, are responsible for billions of dollars in lost food...
In Trypanosoma brucei treated with acoziborole, metabolomics experiments revealed a profound change in methionine metabolism [22], that may relate to RNA...
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StartPage e1008932
SubjectTerms Aldehyde dehydrogenase
Aldehydes
Analysis
Animals
Biology and Life Sciences
Boron Compounds - metabolism
Carboxylic Acids - metabolism
Carboxypeptidase
Carboxypeptidases - metabolism
Chemical compounds
Chemical properties
Chromosome 10
Chromosomes
Cloning
Dosage and administration
Drug dosages
Drug Resistance
Drug therapy
Drugs
Enzyme activation
Female
Forecasts and trends
Gene sequencing
Genes
Genomes
Identification and classification
Infectious diseases
Influence
Livestock
Metabolism
Metabolomics
Methionine
Methylation
Mice
Nucleotide sequence
Parasitemia - veterinary
Parasites
Peptidase
Peptidases
Peptides
Physical Sciences
Prodrugs
Prodrugs - metabolism
Proteases
Protozoan Proteins - metabolism
Research and Analysis Methods
RNA processing
Serine
Serine carboxypeptidase
Splicing
Synteny
Trypanocidal Agents - metabolism
Trypanosoma
Trypanosoma brucei brucei - drug effects
Trypanosoma brucei brucei - enzymology
Trypanosoma congolense - drug effects
Trypanosoma congolense - enzymology
Trypanosoma vivax - drug effects
Trypanosoma vivax - enzymology
Trypanosomiasis, African - drug therapy
Trypanosomiasis, African - parasitology
Trypanosomiasis, African - veterinary
Valine - analogs & derivatives
Valine - metabolism
Veterinary research
Whole genome sequencing
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Title Veterinary trypanocidal benzoxaboroles are peptidase-activated prodrugs
URI https://www.ncbi.nlm.nih.gov/pubmed/33141865
https://www.proquest.com/docview/2479469522
https://www.proquest.com/docview/2457650880
https://pubmed.ncbi.nlm.nih.gov/PMC7710103
https://doaj.org/article/a5d1aac4a0fd47b29679ea476bd015f8
http://dx.doi.org/10.1371/journal.ppat.1008932
Volume 16
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