Whole-genome sequence analysis of Shiga toxin-producing Escherichia coli O157 strains isolated from wild deer and boar in Japan

The prevalence of Shiga toxin-producing Escherichia coli O157 (STEC O157) strains in wild deer and boar in Japan was investigated. STEC O157 strains were isolated from 1.9% (9/474) of the wild deer and 0.7% (3/426) of the wild boar examined. Pulsed-field gel electrophoresis (PFGE) analysis classifie...

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Published inJournal of Veterinary Medical Science Vol. 83; no. 12; pp. 1860 - 1868
Main Authors MORITA, Satoshi, SATO, Shingo, MARUYAMA, Soichi, NAGASAKA, Mariko, MURAKAMI, Kou, INADA, Kazuya, UCHIUMI, Masako, YOKOYAMA, Eiji, ASAKURA, Hiroshi, SUGIYAMA, Hiromu, TAKAI, Shinji, MAEDA, Ken, KABEYA, Hidenori
Format Journal Article
LanguageEnglish
Published Japan JAPANESE SOCIETY OF VETERINARY SCIENCE 2021
Japan Science and Technology Agency
The Japanese Society of Veterinary Science
Subjects
Animals
Animals, Wild
boar
Cattle
Cattle Diseases
Deer
Drug resistance
E coli
Escherichia coli
Escherichia coli Infections - epidemiology
Escherichia coli Infections - veterinary
Escherichia coli Proteins - genetics
Food processing
game meat
Gel electrophoresis
Genomes
Hygiene
Japan - epidemiology
Macrolide antibiotics
Meat
Membrane Transport Proteins
Nucleotide sequence
Pathogenicity
Public Health
Pulsed-field gel electrophoresis
Sequence analysis
Sequence Analysis - veterinary
Shiga toxin
shiga toxin-producing Escherichia coli (STEC)
Shiga-Toxigenic Escherichia coli - genetics
Sus scrofa
Swine
Swine Diseases - epidemiology
Japan
boar
deer
game meat
shiga toxin-producing Escherichia coli (STEC)
public health
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Abstract The prevalence of Shiga toxin-producing Escherichia coli O157 (STEC O157) strains in wild deer and boar in Japan was investigated. STEC O157 strains were isolated from 1.9% (9/474) of the wild deer and 0.7% (3/426) of the wild boar examined. Pulsed-field gel electrophoresis (PFGE) analysis classified the wild deer and boar strains into five and three PFGE patterns, respectively. The PFGE pattern of one wild boar strain was similar to that of a cattle strain that had been isolated from a farm in the same area the wild boar was caught, suggesting that a STEC O157 strain may have been transmitted between wild boar and cattle. Clade analysis indicated that, although most of the strains were classified in clade 12, two strains were classified in clade 7. Whole-genome sequence (WGS) analysis indicated that all the strains carried mdfA, a drug resistance gene for macrolide antibiotics, and also pathogenicity-related genes similar to those in the Sakai strain. In conclusion, our study emphasized the importance of food hygiene in processing meat from Japanese wild animals for human consumption.
AbstractList The prevalence of Shiga toxin-producing Escherichia coli O157 (STEC O157) strains in wild deer and boar in Japan was investigated. STEC O157 strains were isolated from 1.9% (9/474) of the wild deer and 0.7% (3/426) of the wild boar examined. Pulsed-field gel electrophoresis (PFGE) analysis classified the wild deer and boar strains into five and three PFGE patterns, respectively. The PFGE pattern of one wild boar strain was similar to that of a cattle strain that had been isolated from a farm in the same area the wild boar was caught, suggesting that a STEC O157 strain may have been transmitted between wild boar and cattle. Clade analysis indicated that, although most of the strains were classified in clade 12, two strains were classified in clade 7. Whole-genome sequence (WGS) analysis indicated that all the strains carried mdfA, a drug resistance gene for macrolide antibiotics, and also pathogenicity-related genes similar to those in the Sakai strain. In conclusion, our study emphasized the importance of food hygiene in processing meat from Japanese wild animals for human consumption.
The prevalence of Shiga toxin-producing Escherichia coli O157 (STEC O157) strains in wild deer and boar in Japan was investigated. STEC O157 strains were isolated from 1.9% (9/474) of the wild deer and 0.7% (3/426) of the wild boar examined. Pulsed-field gel electrophoresis (PFGE) analysis classified the wild deer and boar strains into five and three PFGE patterns, respectively. The PFGE pattern of one wild boar strain was similar to that of a cattle strain that had been isolated from a farm in the same area the wild boar was caught, suggesting that a STEC O157 strain may have been transmitted between wild boar and cattle. Clade analysis indicated that, although most of the strains were classified in clade 12, two strains were classified in clade 7. Whole-genome sequence (WGS) analysis indicated that all the strains carried mdfA, a drug resistance gene for macrolide antibiotics, and also pathogenicity-related genes similar to those in the Sakai strain. In conclusion, our study emphasized the importance of food hygiene in processing meat from Japanese wild animals for human consumption.The prevalence of Shiga toxin-producing Escherichia coli O157 (STEC O157) strains in wild deer and boar in Japan was investigated. STEC O157 strains were isolated from 1.9% (9/474) of the wild deer and 0.7% (3/426) of the wild boar examined. Pulsed-field gel electrophoresis (PFGE) analysis classified the wild deer and boar strains into five and three PFGE patterns, respectively. The PFGE pattern of one wild boar strain was similar to that of a cattle strain that had been isolated from a farm in the same area the wild boar was caught, suggesting that a STEC O157 strain may have been transmitted between wild boar and cattle. Clade analysis indicated that, although most of the strains were classified in clade 12, two strains were classified in clade 7. Whole-genome sequence (WGS) analysis indicated that all the strains carried mdfA, a drug resistance gene for macrolide antibiotics, and also pathogenicity-related genes similar to those in the Sakai strain. In conclusion, our study emphasized the importance of food hygiene in processing meat from Japanese wild animals for human consumption.
The prevalence of Shiga toxin-producing Escherichia coli O157 (STEC O157) strains in wild deer and boar in Japan was investigated. STEC O157 strains were isolated from 1.9% (9/474) of the wild deer and 0.7% (3/426) of the wild boar examined. Pulsed-field gel electrophoresis (PFGE) analysis classified the wild deer and boar strains into five and three PFGE patterns, respectively. The PFGE pattern of one wild boar strain was similar to that of a cattle strain that had been isolated from a farm in the same area the wild boar was caught, suggesting that a STEC O157 strain may have been transmitted between wild boar and cattle. Clade analysis indicated that, although most of the strains were classified in clade 12, two strains were classified in clade 7. Whole-genome sequence (WGS) analysis indicated that all the strains carried mdfA , a drug resistance gene for macrolide antibiotics, and also pathogenicity-related genes similar to those in the Sakai strain. In conclusion, our study emphasized the importance of food hygiene in processing meat from Japanese wild animals for human consumption.
ArticleNumber 21-0454
Author UCHIUMI, Masako
MAEDA, Ken
MURAKAMI, Kou
MARUYAMA, Soichi
ASAKURA, Hiroshi
INADA, Kazuya
KABEYA, Hidenori
YOKOYAMA, Eiji
SATO, Shingo
TAKAI, Shinji
MORITA, Satoshi
NAGASAKA, Mariko
SUGIYAMA, Hiromu
Author_xml – sequence: 1
  fullname: MORITA, Satoshi
  organization: Laboratory of Veterinary Food Hygiene, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
– sequence: 2
  fullname: SATO, Shingo
  organization: Laboratory of Veterinary Public Health, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
– sequence: 3
  fullname: MARUYAMA, Soichi
  organization: Laboratory of Veterinary Public Health, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
– sequence: 4
  fullname: NAGASAKA, Mariko
  organization: Laboratory of Veterinary Public Health, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
– sequence: 5
  fullname: MURAKAMI, Kou
  organization: Laboratory of Veterinary Public Health, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
– sequence: 6
  fullname: INADA, Kazuya
  organization: Laboratory of Veterinary Public Health, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
– sequence: 7
  fullname: UCHIUMI, Masako
  organization: Laboratory of Veterinary Food Hygiene, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
– sequence: 8
  fullname: YOKOYAMA, Eiji
  organization: Division of Bacteriology, Chiba Prefectural Institute of Public Health, 666-2 Nitona, Chuo, Chiba 260-8715, Japan
– sequence: 9
  fullname: ASAKURA, Hiroshi
  organization: Division of Biomedical Food Research, National Institute of Health Sciences, 3-25-26 Tonomachi, Kawasaki-ku, Kawasaki, Kanagawa 210-9501, Japan
– sequence: 10
  fullname: SUGIYAMA, Hiromu
  organization: Department of Parasitology, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
– sequence: 11
  fullname: TAKAI, Shinji
  organization: Laboratory of Animal Hygiene, School of Veterinary Medicine, Kitasato University, 23-35-1 Higashi, Towada, Aomori 034-8628, Japan
– sequence: 12
  fullname: MAEDA, Ken
  organization: Department of Veterinary Science, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
– sequence: 13
  fullname: KABEYA, Hidenori
  organization: Laboratory of Veterinary Food Hygiene, Department of Veterinary Medicine, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan
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Issue 12
Keywords boar
deer
game meat
shiga toxin-producing Escherichia coli (STEC)
public health
Language English
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Snippet The prevalence of Shiga toxin-producing Escherichia coli O157 (STEC O157) strains in wild deer and boar in Japan was investigated. STEC O157 strains were...
The prevalence of Shiga toxin-producing Escherichia coli O157 (STEC O157) strains in wild deer and boar in Japan was investigated. STEC O157 strains were...
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StartPage 1860
SubjectTerms Animals
Animals, Wild
boar
Cattle
Cattle Diseases
Deer
Drug resistance
E coli
Escherichia coli
Escherichia coli Infections - epidemiology
Escherichia coli Infections - veterinary
Escherichia coli Proteins - genetics
Food processing
game meat
Gel electrophoresis
Genomes
Hygiene
Japan - epidemiology
Macrolide antibiotics
Meat
Membrane Transport Proteins
Nucleotide sequence
Pathogenicity
Public Health
Pulsed-field gel electrophoresis
Sequence analysis
Sequence Analysis - veterinary
Shiga toxin
shiga toxin-producing Escherichia coli (STEC)
Shiga-Toxigenic Escherichia coli - genetics
Sus scrofa
Swine
Swine Diseases - epidemiology
Title Whole-genome sequence analysis of Shiga toxin-producing Escherichia coli O157 strains isolated from wild deer and boar in Japan
URI https://www.jstage.jst.go.jp/article/jvms/83/12/83_21-0454/_article/-char/en
https://www.ncbi.nlm.nih.gov/pubmed/34629335
https://www.proquest.com/docview/2605305351
https://www.proquest.com/docview/2580933941
https://pubmed.ncbi.nlm.nih.gov/PMC8762402
Volume 83
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