Identification of QTLs for rice grain size using a novel set of chromosomal segment substitution lines derived from Yamadanishiki in the genetic background of Koshihikari

Grain size is important for brewing-rice cultivars, but the genetic basis for this trait is still unclear. This paper aims to identify QTLs for grain size using novel chromosomal segment substitution lines (CSSLs) harboring chromosomal segments from Yamadanishiki, an excellent sake-brewing rice, in...

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Published inBreeding Science Vol. 68; no. 2; pp. 210 - 218
Main Authors Okada, Satoshi, Onogi, Akio, Iijima, Ken, Hori, Kiyosumi, Iwata, Hiroyoshi, Yokoyama, Wakana, Suehiro, Miki, Yamasaki, Masanori
Format Journal Article
LanguageEnglish
Published Japan Japanese Society of Breeding 01.03.2018
Japan Science and Technology Agency
Subjects
Breweries
Brewing
brewing-rice cultivar
Cooking
CSSLs
Cultivars
Flowering
Gene loci
Grain size
Inbreeding
Oryza
Particle size
Plant breeding
QTL
QTL-by-environment interaction
Quantitative trait loci
Research Paper
Rice
Sake
Substitutes
QTL
QTL-by-environment interaction
grain size
brewing-rice cultivar
CSSLs
Online AccessGet full text

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Abstract Grain size is important for brewing-rice cultivars, but the genetic basis for this trait is still unclear. This paper aims to identify QTLs for grain size using novel chromosomal segment substitution lines (CSSLs) harboring chromosomal segments from Yamadanishiki, an excellent sake-brewing rice, in the genetic background of Koshihikari, a cooking cultivar. We developed a set of 49 CSSLs. Grain length (GL), grain width (GWh), grain thickness (GT), 100-grain weight (GWt) and days to heading (DTH) were evaluated, and a CSSL-QTL analysis was conducted. Eighteen QTLs for grain size and DTH were identified. Seven (qGL11, qGWh5, qGWh10, qGWt6-2, qGWt10-2, qDTH3, and qDTH6) that were detected in F2 and recombinant inbred lines (RILs) from Koshihikari/Yamadanishiki were validated, suggesting that they are important for large grain size and heading date in Yamadanishiki. Additionally, QTL reanalysis for GWt showed that qGWt10-2 was only detected in early-flowering RILs, while qGWt5 (in the same region as qGWh5) was only detected in late-flowering RILs, suggesting that these QTLs show different responses to the environment. Our study revealed that grain size in the Yamadanishiki cultivar is determined by a complex genetic mechanism. These findings could be useful for the breeding of both cooking and brewing rice.
AbstractList Grain size is important for brewing-rice cultivars, but the genetic basis for this trait is still unclear. This paper aims to identify QTLs for grain size using novel chromosomal segment substitution lines (CSSLs) harboring chromosomal segments from Yamadanishiki, an excellent sake-brewing rice, in the genetic background of Koshihikari, a cooking cultivar. We developed a set of 49 CSSLs. Grain length (GL), grain width (GWh), grain thickness (GT), 100-grain weight (GWt) and days to heading (DTH) were evaluated, and a CSSL-QTL analysis was conducted. Eighteen QTLs for grain size and DTH were identified. Seven ( qGL11 , qGWh5 , qGWh10 , qGWt6-2 , qGWt10-2 , qDTH3 , and qDTH6 ) that were detected in F 2 and recombinant inbred lines (RILs) from Koshihikari/Yamadanishiki were validated, suggesting that they are important for large grain size and heading date in Yamadanishiki. Additionally, QTL reanalysis for GWt showed that qGWt10-2 was only detected in early-flowering RILs, while qGWt5 (in the same region as qGWh5 ) was only detected in late-flowering RILs, suggesting that these QTLs show different responses to the environment. Our study revealed that grain size in the Yamadanishiki cultivar is determined by a complex genetic mechanism. These findings could be useful for the breeding of both cooking and brewing rice.
Grain size is important for brewing-rice cultivars, but the genetic basis for this trait is still unclear. This paper aims to identify QTLs for grain size using novel chromosomal segment substitution lines (CSSLs) harboring chromosomal segments from Yamadanishiki, an excellent sake-brewing rice, in the genetic background of Koshihikari, a cooking cultivar. We developed a set of 49 CSSLs. Grain length (GL), grain width (GWh), grain thickness (GT), 100-grain weight (GWt) and days to heading (DTH) were evaluated, and a CSSL-QTL analysis was conducted. Eighteen QTLs for grain size and DTH were identified. Seven ( , , , , , , and ) that were detected in F and recombinant inbred lines (RILs) from Koshihikari/Yamadanishiki were validated, suggesting that they are important for large grain size and heading date in Yamadanishiki. Additionally, QTL reanalysis for GWt showed that was only detected in early-flowering RILs, while (in the same region as ) was only detected in late-flowering RILs, suggesting that these QTLs show different responses to the environment. Our study revealed that grain size in the Yamadanishiki cultivar is determined by a complex genetic mechanism. These findings could be useful for the breeding of both cooking and brewing rice.
Grain size is important for brewing-rice cultivars, but the genetic basis for this trait is still unclear. This paper aims to identify QTLs for grain size using novel chromosomal segment substitution lines (CSSLs) harboring chromosomal segments from Yamadanishiki, an excellent sake-brewing rice, in the genetic background of Koshihikari, a cooking cultivar. We developed a set of 49 CSSLs. Grain length (GL), grain width (GWh), grain thickness (GT), 100-grain weight (GWt) and days to heading (DTH) were evaluated, and a CSSL-QTL analysis was conducted. Eighteen QTLs for grain size and DTH were identified. Seven (qGL11, qGWh5, qGWh10, qGWt6-2, qGWt10-2, qDTH3, and qDTH6) that were detected in F2 and recombinant inbred lines (RILs) from Koshihikari/Yamadanishiki were validated, suggesting that they are important for large grain size and heading date in Yamadanishiki. Additionally, QTL reanalysis for GWt showed that qGWt10-2 was only detected in early-flowering RILs, while qGWt5 (in the same region as qGWh5) was only detected in late-flowering RILs, suggesting that these QTLs show different responses to the environment. Our study revealed that grain size in the Yamadanishiki cultivar is determined by a complex genetic mechanism. These findings could be useful for the breeding of both cooking and brewing rice.
Author Yamasaki, Masanori
Yokoyama, Wakana
Onogi, Akio
Suehiro, Miki
Okada, Satoshi
Iijima, Ken
Hori, Kiyosumi
Iwata, Hiroyoshi
AuthorAffiliation 2 Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo , Yayoi, Bunkyo-Ku, Tokyo 113-8657 , Japan
3 Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba, Ibaraki 305-8518 , Japan
1 Food Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University , Kasai, Hyogo 675-2103 , Japan
AuthorAffiliation_xml – name: 2 Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo , Yayoi, Bunkyo-Ku, Tokyo 113-8657 , Japan
– name: 1 Food Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University , Kasai, Hyogo 675-2103 , Japan
– name: 3 Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba, Ibaraki 305-8518 , Japan
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Issue 2
Keywords QTL
QTL-by-environment interaction
grain size
brewing-rice cultivar
CSSLs
Language English
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Snippet Grain size is important for brewing-rice cultivars, but the genetic basis for this trait is still unclear. This paper aims to identify QTLs for grain size...
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StartPage 210
SubjectTerms Breweries
Brewing
brewing-rice cultivar
Cooking
CSSLs
Cultivars
Flowering
Gene loci
Grain size
Inbreeding
Oryza
Particle size
Plant breeding
QTL
QTL-by-environment interaction
Quantitative trait loci
Research Paper
Rice
Sake
Substitutes
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Title Identification of QTLs for rice grain size using a novel set of chromosomal segment substitution lines derived from Yamadanishiki in the genetic background of Koshihikari
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Volume 68
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