Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination - Pightling, Arthur W.; Pettengill, James B.; Wang, Yu; Rand, Hugh; Strain, Errol (Genome Biology, 2019)
Keywords: Cluster Analysis; Contaminants; Contamination; data collection; Datasets; DNA Contamination; E coli; Escherichia coli; Escherichia coli - genetics; Gene mapping; genome; Genome, Bacterial; Genomes; Influence; Listeria; Listeria monocytogenes; Listeria monocytogenes - genetics; Nucleotide sequence; Phylogenetics; Phylogeny; Salmonella; Salmonella enterica; Salmonella enterica - genetics; Short Report; Single-nucleotide polymorphism; Species; Whole Genome Sequencing; Salmonella enterica; MLST; SNP; Clustering analyses; Whole-genome sequencing; Escherichia coli; Multi-locus sequence typing; Comparative genomics; Listeria monocytogenes; Phylogenetics; Single-nucleotide polymorphism; Contamination