Identification of a novel polyomavirus from patients with acute respiratory tract infections
We report the identification of a novel polyomavirus present in respiratory secretions from human patients with symptoms of acute respiratory tract infection. The virus was initially detected in a nasopharyngeal aspirate from a 3-year-old child from Australia diagnosed with pneumonia. A random libra...
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Published in | PLoS pathogens Vol. 3; no. 5; p. e64 |
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Main Authors | , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
United States
Public Library of Science
01.05.2007
Public Library of Science (PLoS) |
Subjects | |
Online Access | Get full text |
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Abstract | We report the identification of a novel polyomavirus present in respiratory secretions from human patients with symptoms of acute respiratory tract infection. The virus was initially detected in a nasopharyngeal aspirate from a 3-year-old child from Australia diagnosed with pneumonia. A random library was generated from nucleic acids extracted from the nasopharyngeal aspirate and analyzed by high throughput DNA sequencing. Multiple DNA fragments were cloned that possessed limited homology to known polyomaviruses. We subsequently sequenced the entire virus genome of 5,229 bp, henceforth referred to as WU virus, and found it to have genomic features characteristic of the family Polyomaviridae. The genome was predicted to encode small T antigen, large T antigen, and three capsid proteins: VP1, VP2, and VP3. Phylogenetic analysis clearly revealed that the WU virus was divergent from all known polyomaviruses. Screening of 2,135 patients with acute respiratory tract infections in Brisbane, Queensland, Australia, and St. Louis, Missouri, United States, using WU virus-specific PCR primers resulted in the detection of 43 additional specimens that contained WU virus. The presence of multiple instances of the virus in two continents suggests that this virus is geographically widespread in the human population and raises the possibility that the WU virus may be a human pathogen. |
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AbstractList | We report the identification of a novel polyomavirus present in respiratory secretions from human patients with symptoms of acute respiratory tract infection. The virus was initially detected in a nasopharyngeal aspirate from a 3-year-old child from Australia diagnosed with pneumonia. A random library was generated from nucleic acids extracted from the nasopharyngeal aspirate and analyzed by high throughput DNA sequencing. Multiple DNA fragments were cloned that possessed limited homology to known polyomaviruses. We subsequently sequenced the entire virus genome of 5,229 bp, henceforth referred to as WU virus, and found it to have genomic features characteristic of the family Polyomaviridae. The genome was predicted to encode small T antigen, large T antigen, and three capsid proteins: VP1, VP2, and VP3. Phylogenetic analysis clearly revealed that the WU virus was divergent from all known polyomaviruses. Screening of 2,135 patients with acute respiratory tract infections in Brisbane, Queensland, Australia, and St. Louis, Missouri, United States, using WU virus-specific PCR primers resulted in the detection of 43 additional specimens that contained WU virus. The presence of multiple instances of the virus in two continents suggests that this virus is geographically widespread in the human population and raises the possibility that the WU virus may be a human pathogen. We report the identification of a novel polyomavirus present in respiratory secretions from human patients with symptoms of acute respiratory tract infection. The virus was initially detected in a nasopharyngeal aspirate from a 3-year-old child from Australia diagnosed with pneumonia. A random library was generated from nucleic acids extracted from the nasopharyngeal aspirate and analyzed by high throughput DNA sequencing. Multiple DNA fragments were cloned that possessed limited homology to known polyomaviruses. We subsequently sequenced the entire virus genome of 5,229 bp, henceforth referred to as WU virus, and found it to have genomic features characteristic of the family Polyomaviridae. The genome was predicted to encode small T antigen, large T antigen, and three capsid proteins: VP1, VP2, and VP3. Phylogenetic analysis clearly revealed that the WU virus was divergent from all known polyomaviruses. Screening of 2,135 patients with acute respiratory tract infections in Brisbane, Queensland, Australia, and St. Louis, Missouri, United States, using WU virus-specific PCR primers resulted in the detection of 43 additional specimens that contained WU virus. The presence of multiple instances of the virus in two continents suggests that this virus is geographically widespread in the human population and raises the possibility that the WU virus may be a human pathogen. |
Audience | Academic |
Author | Nissen, Michael D Whiley, David M Sloots, Theo P Lambert, Stephen B Gaynor, Anne M Wang, David Mackay, Ian M Brennan, Daniel C Storch, Gregory A Wu, Guang |
AuthorAffiliation | 1 Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America University of California San Francisco, United States of America 3 Department of Internal Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America 4 Department of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, United States of America 5 Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, United States of America 2 Queensland Paediatric Infectious Diseases Laboratory, Sir Albert Sakzewski Virus Research Centre, Royal Children's Hospital, Brisbane, Queensland, Australia |
AuthorAffiliation_xml | – name: 3 Department of Internal Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America – name: 5 Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, United States of America – name: 2 Queensland Paediatric Infectious Diseases Laboratory, Sir Albert Sakzewski Virus Research Centre, Royal Children's Hospital, Brisbane, Queensland, Australia – name: University of California San Francisco, United States of America – name: 4 Department of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, United States of America – name: 1 Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America |
Author_xml | – sequence: 1 givenname: Anne M surname: Gaynor fullname: Gaynor, Anne M organization: Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America – sequence: 2 givenname: Michael D surname: Nissen fullname: Nissen, Michael D – sequence: 3 givenname: David M surname: Whiley fullname: Whiley, David M – sequence: 4 givenname: Ian M surname: Mackay fullname: Mackay, Ian M – sequence: 5 givenname: Stephen B surname: Lambert fullname: Lambert, Stephen B – sequence: 6 givenname: Guang surname: Wu fullname: Wu, Guang – sequence: 7 givenname: Daniel C surname: Brennan fullname: Brennan, Daniel C – sequence: 8 givenname: Gregory A surname: Storch fullname: Storch, Gregory A – sequence: 9 givenname: Theo P surname: Sloots fullname: Sloots, Theo P – sequence: 10 givenname: David surname: Wang fullname: Wang, David |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/17480120$$D View this record in MEDLINE/PubMed |
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SubjectTerms | Acute Disease Amino acids Base Sequence Binding sites Deoxyribonucleic acid DNA DNA Probes Genetic aspects Genome, Viral Genomes Global Health Homo (Human) Humans Infections Infectious Diseases Microbiology Molecular Sequence Data Polymerase Chain Reaction Polyomavirus - genetics Polyomavirus - isolation & purification Proteins Respiratory tract infections Respiratory Tract Infections - virology Viral infections Viral Proteins Virology Viruses |
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Title | Identification of a novel polyomavirus from patients with acute respiratory tract infections |
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