Structural basis of GPBAR activation and bile acid recognition
The G-protein-coupled bile acid receptor (GPBAR) conveys the cross-membrane signalling of a vast variety of bile acids and is a signalling hub in the liver–bile acid–microbiota–metabolism axis 1 – 3 . Here we report the cryo-electron microscopy structures of GPBAR–G s complexes stabilized by either...
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Published in | Nature (London) Vol. 587; no. 7834; pp. 499 - 504 |
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Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
London
Nature Publishing Group UK
19.11.2020
Nature Publishing Group |
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Abstract | The G-protein-coupled bile acid receptor (GPBAR) conveys the cross-membrane signalling of a vast variety of bile acids and is a signalling hub in the liver–bile acid–microbiota–metabolism axis
1
–
3
. Here we report the cryo-electron microscopy structures of GPBAR–G
s
complexes stabilized by either the high-affinity P395
4
or the semisynthesized bile acid derivative INT-777
1
,
3
at 3 Å resolution. These structures revealed a large oval pocket that contains several polar groups positioned to accommodate the amphipathic cholic core of bile acids, a fingerprint of key residues to recognize diverse bile acids in the orthosteric site, a putative second bile acid-binding site with allosteric properties and structural features that contribute to bias properties. Moreover, GPBAR undertakes an atypical mode of activation and G protein coupling that features a different set of key residues connecting the ligand-binding pocket to the G
s
-coupling site, and a specific interaction motif that is localized in intracellular loop 3. Overall, our study not only reveals unique structural features of GPBAR that are involved in bile acid recognition and allosteric effects, but also suggests the presence of distinct connecting mechanisms between the ligand-binding pocket and the G-protein-binding site in the G-protein-coupled receptor superfamily.
Using cryo-electron microscopy, the authors report the structures of G-protein-coupled bile acid receptor–G
s
complexes and reveal the structural basis of bile acid recognition. |
---|---|
AbstractList | The G-protein-coupled bile acid receptor (GPBAR) conveys the cross-membrane signalling of a vast variety of bile acids and is a signalling hub in the liver-bile acid-microbiota-metabolism axis.sup.1-3. Here we report the cryo-electron microscopy structures of GPBAR-G.sub.s complexes stabilized by either the high-affinity P395.sup.4 or the semisynthesized bile acid derivative INT-777.sup.1,3 at 3 Å resolution. These structures revealed a large oval pocket that contains several polar groups positioned to accommodate the amphipathic cholic core of bile acids, a fingerprint of key residues to recognize diverse bile acids in the orthosteric site, a putative second bile acid-binding site with allosteric properties and structural features that contribute to bias properties. Moreover, GPBAR undertakes an atypical mode of activation and G protein coupling that features a different set of key residues connecting the ligand-binding pocket to the G.sub.s-coupling site, and a specific interaction motif that is localized in intracellular loop 3. Overall, our study not only reveals unique structural features of GPBAR that are involved in bile acid recognition and allosteric effects, but also suggests the presence of distinct connecting mechanisms between the ligand-binding pocket and the G-protein-binding site in the G-protein-coupled receptor superfamily. The G-protein-coupled bile acid receptor (GPBAR) conveys the cross-membrane signalling of a vast variety of bile acids and is a signalling hub in the liver-bile acidmicrobiota-metabolism axis1-3. Here we report the cryo-electron microscopy structures of GPBAR-Gs complexes stabilized by either the high-affinity P3954 or the semisynthesized bile acid derivative 1NT-7771,3 at 3 Å resolution. These structures revealed a large oval pocket that contains several polar groups positioned to accommodate the amphipathic cholic core of bile acids, a fingerprint of key residues to recognize diverse bile acids in the orthosteric site, a putative second bile acid-binding site with allosteric properties and structural features that contribute to bias properties. Moreover, GPBAR undertakes an atypical mode of activation and G protein coupling that features a different set of key residues connecting the ligand-binding pocket to the Gs-coupling site, and a specific interaction motifthat is localized in intracellular loop 3. Overall, our study not only reveals unique structural features of GPBAR that are involved in bile acid recognition and allosteric effects, but also suggests the presence of distinct connecting mechanisms between the ligand-binding pocket and the G-protein-binding site in the G-protein-coupled receptor superfamily. The G-protein-coupled bile acid receptor (GPBAR) conveys the cross-membrane signalling of a vast variety of bile acids and is a signalling hub in the liver-bile acid-microbiota-metabolism axis.sup.1-3. Here we report the cryo-electron microscopy structures of GPBAR-G.sub.s complexes stabilized by either the high-affinity P395.sup.4 or the semisynthesized bile acid derivative INT-777.sup.1,3 at 3 Å resolution. These structures revealed a large oval pocket that contains several polar groups positioned to accommodate the amphipathic cholic core of bile acids, a fingerprint of key residues to recognize diverse bile acids in the orthosteric site, a putative second bile acid-binding site with allosteric properties and structural features that contribute to bias properties. Moreover, GPBAR undertakes an atypical mode of activation and G protein coupling that features a different set of key residues connecting the ligand-binding pocket to the G.sub.s-coupling site, and a specific interaction motif that is localized in intracellular loop 3. Overall, our study not only reveals unique structural features of GPBAR that are involved in bile acid recognition and allosteric effects, but also suggests the presence of distinct connecting mechanisms between the ligand-binding pocket and the G-protein-binding site in the G-protein-coupled receptor superfamily. Using cryo-electron microscopy, the authors report the structures of G-protein-coupled bile acid receptor-G.sub.s complexes and reveal the structural basis of bile acid recognition. The G-protein-coupled bile acid receptor (GPBAR) conveys the cross-membrane signalling of a vast variety of bile acids and is a signalling hub in the liver–bile acid–microbiota–metabolism axis 1 – 3 . Here we report the cryo-electron microscopy structures of GPBAR–G s complexes stabilized by either the high-affinity P395 4 or the semisynthesized bile acid derivative INT-777 1 , 3 at 3 Å resolution. These structures revealed a large oval pocket that contains several polar groups positioned to accommodate the amphipathic cholic core of bile acids, a fingerprint of key residues to recognize diverse bile acids in the orthosteric site, a putative second bile acid-binding site with allosteric properties and structural features that contribute to bias properties. Moreover, GPBAR undertakes an atypical mode of activation and G protein coupling that features a different set of key residues connecting the ligand-binding pocket to the G s -coupling site, and a specific interaction motif that is localized in intracellular loop 3. Overall, our study not only reveals unique structural features of GPBAR that are involved in bile acid recognition and allosteric effects, but also suggests the presence of distinct connecting mechanisms between the ligand-binding pocket and the G-protein-binding site in the G-protein-coupled receptor superfamily. Using cryo-electron microscopy, the authors report the structures of G-protein-coupled bile acid receptor–G s complexes and reveal the structural basis of bile acid recognition. The G-protein-coupled bile acid receptor (GPBAR) conveys the cross-membrane signalling of a vast variety of bile acids and is a signalling hub in the liver-bile acid-microbiota-metabolism axis . Here we report the cryo-electron microscopy structures of GPBAR-G complexes stabilized by either the high-affinity P395 or the semisynthesized bile acid derivative INT-777 at 3 Å resolution. These structures revealed a large oval pocket that contains several polar groups positioned to accommodate the amphipathic cholic core of bile acids, a fingerprint of key residues to recognize diverse bile acids in the orthosteric site, a putative second bile acid-binding site with allosteric properties and structural features that contribute to bias properties. Moreover, GPBAR undertakes an atypical mode of activation and G protein coupling that features a different set of key residues connecting the ligand-binding pocket to the G -coupling site, and a specific interaction motif that is localized in intracellular loop 3. Overall, our study not only reveals unique structural features of GPBAR that are involved in bile acid recognition and allosteric effects, but also suggests the presence of distinct connecting mechanisms between the ligand-binding pocket and the G-protein-binding site in the G-protein-coupled receptor superfamily. |
Audience | Academic |
Author | Zhang, Chenlu Mao, Chunyou Guo, Shimeng Wu, Xiang Huang, Shenming Jiang, Changtao Shen, Qingya Zhang, Yan Luca, Vincent C. Lu, Ruirui Zhou, Jiuyao Ming, Qianqian Ma, Cheng Shen, Dan-Dan Yu, Xiao Zhang, Kai Liang, Xiaoying Lin, Jingyu Ping, Yuqi Guo, Lulu Sun, Jin-Peng Xiao, Peng Yang, Fan Zhang, Linqi Shen, Yuemao Nan, Fajun Yi, Fan Xie, Xin |
Author_xml | – sequence: 1 givenname: Fan surname: Yang fullname: Yang, Fan organization: Key Laboratory Experimental Teratology of the Ministry of Education, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Key Laboratory Experimental Teratology of the Ministry of Education, Department of Physiology, School of Basic Medical Sciences, Shandong University – sequence: 2 givenname: Chunyou surname: Mao fullname: Mao, Chunyou organization: Department of Pathology of Sir Run Run Shaw Hospital, and Department of Biophysics, Zhejiang University School of Medicine, Zhejiang Laboratory for Systems & Precision Medicine, Zhejiang University Medical Center – sequence: 3 givenname: Lulu surname: Guo fullname: Guo, Lulu organization: Key Laboratory Experimental Teratology of the Ministry of Education, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Key Laboratory Experimental Teratology of the Ministry of Education, Department of Physiology, School of Basic Medical Sciences, Shandong University – sequence: 4 givenname: Jingyu surname: Lin fullname: Lin, Jingyu organization: Key Laboratory Experimental Teratology of the Ministry of Education, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Key Laboratory Experimental Teratology of the Ministry of Education, Department of Physiology, School of Basic Medical Sciences, Shandong University – sequence: 5 givenname: Qianqian surname: Ming fullname: Ming, Qianqian organization: Department of Pathology of Sir Run Run Shaw Hospital, and Department of Biophysics, Zhejiang University School of Medicine, Zhejiang Laboratory for Systems & Precision Medicine, Zhejiang University Medical Center, Department of Drug Discovery, Moffitt Cancer Center and Research Institute – sequence: 6 givenname: Peng surname: Xiao fullname: Xiao, Peng organization: Key Laboratory Experimental Teratology of the Ministry of Education, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University – sequence: 7 givenname: Xiang surname: Wu fullname: Wu, Xiang organization: Key Laboratory Experimental Teratology of the Ministry of Education, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University – sequence: 8 givenname: Qingya surname: Shen fullname: Shen, Qingya organization: Department of Pathology of Sir Run Run Shaw Hospital, and Department of Biophysics, Zhejiang University School of Medicine, Zhejiang Laboratory for Systems & Precision Medicine, Zhejiang University Medical Center – sequence: 9 givenname: Shimeng surname: Guo fullname: Guo, Shimeng organization: CAS Key Laboratory of Receptor Research, the National Center for Drug 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organization: Key Laboratory Experimental Teratology of the Ministry of Education, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University – sequence: 18 givenname: Xiaoying surname: Liang fullname: Liang, Xiaoying organization: CAS Key Laboratory of Receptor Research, the National Center for Drug Screening, Shanghai Institute of Materia Medica, Chinese Academy of Sciences – sequence: 19 givenname: Yuemao surname: Shen fullname: Shen, Yuemao organization: School of Pharmaceutical Sciences, Shandong University – sequence: 20 givenname: Fajun surname: Nan fullname: Nan, Fajun organization: CAS Key Laboratory of Receptor Research, the National Center for Drug Screening, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, School of Pharmaceutical Science and Technology, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences – sequence: 21 givenname: Fan surname: Yi fullname: Yi, Fan organization: Key Laboratory of Infection and Immunity of Shandong Province, Department of Pharmacology, School of Basic Medical Sciences, Shandong University – sequence: 22 givenname: Vincent C. surname: Luca fullname: Luca, Vincent C. organization: Department of Drug Discovery, Moffitt Cancer Center and Research Institute – sequence: 23 givenname: Jiuyao surname: Zhou fullname: Zhou, Jiuyao organization: Department of Pharmacology, School of Pharmaceutical Sciences, Guangzhou University of Chinese Medicine – sequence: 24 givenname: Changtao orcidid: 0000-0002-5206-2372 surname: Jiang fullname: Jiang, Changtao organization: Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, Key Laboratory of Molecular Cardiovascular Science, Ministry of Education – sequence: 25 givenname: Jin-Peng surname: Sun fullname: Sun, Jin-Peng email: sunjinpeng@sdu.edu.cn organization: Key Laboratory Experimental Teratology of the Ministry of Education, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Department of Pharmacology, School of Pharmaceutical Sciences, Guangzhou University of Chinese Medicine, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, Key Laboratory of Molecular Cardiovascular Science, Ministry of Education – sequence: 26 givenname: Xin orcidid: 0000-0003-2314-4800 surname: Xie fullname: Xie, Xin email: xxie@simm.ac.cn organization: CAS Key Laboratory of Receptor Research, the National Center for Drug Screening, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, School of Pharmaceutical Science and Technology, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences – sequence: 27 givenname: Xiao orcidid: 0000-0003-1119-8334 surname: Yu fullname: Yu, Xiao email: yuxiao@sdu.edu.cn organization: Key Laboratory Experimental Teratology of the Ministry of Education, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Key Laboratory Experimental Teratology of the Ministry of Education, Department of Physiology, School of Basic Medical Sciences, Shandong University – sequence: 28 givenname: Yan orcidid: 0000-0003-2189-0244 surname: Zhang fullname: Zhang, Yan email: zhang_yan@zju.edu.cn organization: Department of Pathology of Sir Run Run Shaw Hospital, and Department of Biophysics, Zhejiang University School of Medicine, Zhejiang Laboratory for Systems & Precision Medicine, Zhejiang University Medical Center, MOE Frontier Science Center for Brain Research and Brain-Machine Integration, Zhejiang University School of Medicine |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/32698187$$D View this record in MEDLINE/PubMed |
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Copyright | The Author(s), under exclusive licence to Springer Nature Limited 2020 COPYRIGHT 2020 Nature Publishing Group Copyright Nature Publishing Group Nov 19, 2020 |
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Snippet | The G-protein-coupled bile acid receptor (GPBAR) conveys the cross-membrane signalling of a vast variety of bile acids and is a signalling hub in the... |
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SubjectTerms | 101/28 631/154/436/2387 631/45/535/1258/1259 82 82/80 96 Acids Allosteric properties Allosteric Regulation - drug effects Bile Bile acids Bile Acids and Salts - chemistry Bile Acids and Salts - metabolism Binding sites Binding Sites - drug effects Cell receptors Cholic Acids - chemistry Cholic Acids - pharmacology Coupling Cryoelectron Microscopy Electron microscopy Enzyme activation G protein-coupled receptors G proteins GTP-Binding Protein alpha Subunits, Gs - chemistry GTP-Binding Protein alpha Subunits, Gs - metabolism GTP-Binding Protein alpha Subunits, Gs - ultrastructure Humanities and Social Sciences Humans Ligands Metabolism Microscopy Models, Molecular multidisciplinary Mutation Observations Physiological aspects Protein Binding Proteins Receptors Receptors, G-Protein-Coupled - agonists Receptors, G-Protein-Coupled - chemistry Receptors, G-Protein-Coupled - metabolism Receptors, G-Protein-Coupled - ultrastructure Residues Science Science (multidisciplinary) Signaling Steroids Structure Substrate Specificity Varieties |
Title | Structural basis of GPBAR activation and bile acid recognition |
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