Absence of linkage disequilibria between chromosomal arrangements and mtDNA haplotypes in natural populations of Drosophila subobscura from the Balkan Peninsula

The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in populations from the Derventa River Gorge and Sicevo Gorge (Serbia). To investigate the role of cytonuclear interactions in shaping mitochondrial...

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Published inGenome Vol. 55; no. 3; pp. 214 - 221
Main Authors Jelić, Mihailo, Castro, José A, Kurbalija Novičić, Zorana, Kenig, Bojan, Dimitrijević, Danica, Savić Veselinović, Marija, Jovanović, Miloš, Milovanović, Dragomir, Stamenković-Radak, Marina, Andjelković, Marko
Format Journal Article
LanguageEnglish
Published Canada NRC Research Press 01.03.2012
Canadian Science Publishing NRC Research Press
Subjects
ADNmt
Analysis
Animal genetics
Animals
Chromosomes
Chromosomes - genetics
co-adaptation
coadaptation
cytonuclear interactions
Deoxyribonucleic acid
DNA
DNA, Mitochondrial - genetics
Drosophila
Drosophila - genetics
Drosophila subobscura
Frequency distribution
Genetic aspects
Genetic structure
Genetics
Haplotypes
Haplotypes - genetics
Insects
interactions cytonucléaires
inversion polymorphism
Linkage Disequilibrium
Mitochondrial DNA
mtDNA
Natural populations
Physiological aspects
Polymorphism
polymorphisme d’inversion
populations naturelles
Restriction Mapping
Rivers
Serbia
Wolbachia - genetics
Serbia
Balkan Peninsula
Derventa Bosnia-Hercegovina
Bosnia-Hercegovina
Europe, Balkan Peninsula
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Abstract The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in populations from the Derventa River Gorge and Sicevo Gorge (Serbia). To investigate the role of cytonuclear interactions in shaping mitochondrial DNA variability in natural populations of this species, the study was complemented with the analysis of linkage disequilibria between mitochondrial haplotypes and chromosomal inversion arrangements. Similar to other populations of D. subobscura, two main haplotypes (I and II) were found, as well as a series of less common ones. The frequencies of haplotypes I and II accounted for 25.8% and 71.0%, respectively, in the population from the Derventa River Gorge, and for 32.4% and 58.1%, respectively, in the population from Sicevo Gorge. One of the haplotypes harbored a large insertion (2.7 kb) in the A+T rich region. The frequency distribution of both haplotypes did not depart from neutrality. Contrary to prior studies, we did not detect any significant linkage disequilibrium between the two most frequent mtDNA haplotypes and any of the chromosomal arrangements in either of the populations. We conclude that linkage disequilibrium is not a general occurrence in natural populations of D. subobscura, and we discuss how transient coadaptations, ecologically specific selective pressures, and demographics could contribute to population-specific patterns of linkage disequilibrium.
AbstractList The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in populations from the Derventa River Gorge and Sicevo Gorge (Serbia). To investigate the role of cytonuclear interactions in shaping mitochondrial DNA variability in natural populations of this species, the study was complemented with the analysis of linkage disequilibria between mitochondrial haplotypes and chromosomal inversion arrangements. Similar to other populations of D. subobscura, two main haplotypes (I and II) were found, as well as a series of less common ones. The frequencies of haplotypes I and II accounted for 25.8% and 71.0%, respectively, in the population from the Derventa River Gorge, and for 32.4% and 58.1%, respectively, in the population from Sicevo Gorge. One of the haplotypes harbored a large insertion (2.7 kb) in the A+T rich region. The frequency distribution of both haplotypes did not depart from neutrality. Contrary to prior studies, we did not detect any significant linkage disequilibrium between the two most frequent mtDNA haplotypes and any of the chromosomal arrangements in either of the populations. We conclude that linkage disequilibrium is not a general occurrence in natural populations of D. subobscura, and we discuss how transient coadaptations, ecologically specific selective pressures, and demographics could contribute to population-specific patterns of linkage disequilibrium.
The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in populations from the Derventa River Gorge and Sicevo Gorge (Serbia). To investigate the role of cytonuclear interactions in shaping mitochondrial DNA variability in natural populations of this species, the study was complemented with the analysis of linkage disequilibria between mitochondrial haplotypes and chromosomal inversion arrangements. Similar to other populations of D. subobscura, two main haplotypes (I and II) were found, as well as a series of less common ones. The frequencies of haplotypes I and II accounted for 25.8% and 71.0%, respectively, in the population from the Derventa River Gorge, and for 32.4% and 58.1%, respectively, in the population from Sicevo Gorge. One of the haplotypes harbored a large insertion (2.7 kb) in the A+T rich region. The frequency distribution of both haplotypes did not depart from neutrality. Contrary to prior studies, we did not detect any significant linkage disequilibrium between the two most frequent mtDNA haplotypes and any of the chromosomal arrangements in either of the populations. We conclude that linkage disequilibrium is not a general occurrence in natural populations of D. subobscura, and we discuss how transient coadaptations, ecologically specific selective pressures, and demographics could contribute to population-specific patterns of linkage disequilibrium.
The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in populations from the Derventa River Gorge and Sicevo Gorge (Serbia). To investigate the role of cytonuclear interactions in shaping mitochondrial DNA variability in natural populations of this species, the study was complemented with the analysis of linkage disequilibria between mitochondrial haplotypes and chromosomal inversion arrangements. Similar to other populations of D. subobscura, two main haplotypes (I and II) were found, as well as a series of less common ones. The frequencies of haplotypes I and II accounted for 25.8% and 71.0%, respectively, in the population from the Derventa River Gorge, and for 32.4% and 58.1%, respectively, in the population from Sicevo Gorge. One of the haplotypes harbored a large insertion (2.7 kb) in the A+T rich region. The frequency distribution of both haplotypes did not depart from neutrality. Contrary to prior studies, we did not detect any significant linkage disequilibrium between the two most frequent mtDNA haplotypes and any of the chromosomal arrangements in either of the populations. We conclude that linkage disequilibrium is not a general occurrence in natural populations of D. subobscura, and we discuss how transient coadaptations, ecologically specific selective pressures, and demographics could contribute to population-specific patterns of linkage disequilibrium. Key words: mtDNA, inversion polymorphism, cytonuclear interactions, coadaptation, natural populations. La structure genetique chez le Drosophila subobscura de la peninsule balkanique a ete etudiee au moyen du polymorphisme de site de restriction au sein de l'ADN mitochondrial chez des populations provenant de la gorge de la riviere Derventa ou de la gorge Sicevo (Serbie). Afin d'etudier le role des interactions cytonucleaires dans l'etablissement de la variabilite au sein de l'ADN mitochondrial chez des populations naturelles de cette espece, l'etude a ete completee avec l'analyse du desequilibre de liaison entre les haplotypes mitochondriaux et les inversions chromosomiques. Comme chez d'autres populations du D. subobscura, deux haplotypes principaux (I et II) ont ete trouves, accompagnes d'une serie d'haplotypes moins repandus. Les frequences des haplotypes I et II etaient respectivement de 25,8 % et 71,0 % au sein de la population de la gorge de la riviere Derventa et de 32,4 % et 58,1 % respectivement chez la population de la gorge Sicevo. Un des haplotypes presentait une grande insertion (2,7 kb) dans la region riche en A+T. La distribution des frequences des deux haplotypes ne differait pas significativement de la neutralite. Contrairement a ce qui a ete rapporte dans d' autres travaux, les auteurs n'ont pas detecte de desequilibre de liaison significatif entre les deux haplotypes d'ADNmt les plus frequents et les rearrangements chromosomiques chez ces deux populations. Les auteurs concluent que le desequilibre de liaison n' est pas un phenomene generalise au sein des populations naturelles du D. subobscura et ils discutent comment des co-adaptations transitoires, des pressions de selection specifiques d'un environnement et la demographie pourraient contribuer a des desequilibres de liaison specifiques de certaines populations. Mots-cles : ADNmt, polymorphisme d'inversion, interactions cytonucleaires, co-adaptation, populations naturelles. [Traduit par la Redaction]
The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in populations from the Derventa River Gorge and Sicevo Gorge (Serbia). To investigate the role of cytonuclear interactions in shaping mitochondrial DNA variability in natural populations of this species, the study was complemented with the analysis of linkage disequilibria between mitochondrial haplotypes and chromosomal inversion arrangements. Similar to other populations of D. subobscura, two main haplotypes (I and II) were found, as well as a series of less common ones. The frequencies of haplotypes I and II accounted for 25.8% and 71.0%, respectively, in the population from the Derventa River Gorge, and for 32.4% and 58.1%, respectively, in the population from Sicevo Gorge. One of the haplotypes harbored a large insertion (2.7 kb) in the A+T rich region. The frequency distribution of both haplotypes did not depart from neutrality. Contrary to prior studies, we did not detect any significant linkage disequilibrium between the two most frequent mtDNA haplotypes and any of the chromosomal arrangements in either of the populations. We conclude that linkage disequilibrium is not a general occurrence in natural populations of D. subobscura, and we discuss how transient coadaptations, ecologically specific selective pressures, and demographics could contribute to population-specific patterns of linkage disequilibrium. [PUBLICATION ABSTRACT]
The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in populations from the Derventa River Gorge and Sicevo Gorge (Serbia). To investigate the role of cytonuclear interactions in shaping mitochondrial DNA variability in natural populations of this species, the study was complemented with the analysis of linkage disequilibria between mitochondrial haplotypes and chromosomal inversion arrangements. Similar to other populations of D. subobscura, two main haplotypes (I and II) were found, as well as a series of less common ones. The frequencies of haplotypes I and II accounted for 25.8% and 71.0%, respectively, in the population from the Derventa River Gorge, and for 32.4% and 58.1%, respectively, in the population from Sicevo Gorge. One of the haplotypes harbored a large insertion (2.7 kb) in the A+T rich region. The frequency distribution of both haplotypes did not depart from neutrality. Contrary to prior studies, we did not detect any significant linkage disequilibrium between the two most frequent mtDNA haplotypes and any of the chromosomal arrangements in either of the populations. We conclude that linkage disequilibrium is not a general occurrence in natural populations of D. subobscura, and we discuss how transient coadaptations, ecologically specific selective pressures, and demographics could contribute to population-specific patterns of linkage disequilibrium.
The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in populations from the Derventa River Gorge and Sicevo Gorge (Serbia). To investigate the role of cytonuclear interactions in shaping mitochondrial DNA variability in natural populations of this species, the study was complemented with the analysis of linkage disequilibria between mitochondrial haplotypes and chromosomal inversion arrangements. Similar to other populations of D. subobscura, two main haplotypes (I and II) were found, as well as a series of less common ones. The frequencies of haplotypes I and II accounted for 25.8% and 71.0%, respectively, in the population from the Derventa River Gorge, and for 32.4% and 58.1%, respectively, in the population from Sicevo Gorge. One of the haplotypes harbored a large insertion (2.7 kb) in the A+T rich region. The frequency distribution of both haplotypes did not depart from neutrality. Contrary to prior studies, we did not detect any significant linkage disequilibrium between the two most frequent mtDNA haplotypes and any of the chromosomal arrangements in either of the populations. We conclude that linkage disequilibrium is not a general occurrence in natural populations of D. subobscura, and we discuss how transient coadaptations, ecologically specific selective pressures, and demographics could contribute to population-specific patterns of linkage disequilibrium.Original Abstract: La structure genetique chez le Drosophila subobscura de la peninsule balkanique a ete etudiee au moyen du polymorphisme de site de restriction au sein de l'ADN mitochondrial chez des populations provenant de la gorge de la riviere Derventa ou de la gorge Sicevo (Serbie). Afin d'etudier le role des interactions cytonucleaires dans l'etablissement de la variabilite au sein de l'ADN mitochondrial chez des populations naturelles de cette espece, l'etude a ete completee avec l'analyse du desequilibre de liaison entre les haplotypes mitochondriaux et les inversions chromosomiques. Comme chez d'autres populations du D. subobscura, deux haplotypes principaux (I et II) ont ete trouves, accompagnes d'une serie d'haplotypes moins repandus. Les frequences des haplotypes I et II etaient respectivement de 25,8 % et 71,0 % au sein de la population de la gorge de la riviere Derventa et de 32,4 % et 58,1 % respectivement chez la population de la gorge Sicevo. Un des haplotypes presentait une grande insertion (2,7 kb) dans la region riche en A+T. La distribution des frequences des deux haplotypes ne differait pas significativement de la neutralite. Contrairement a ce qui a ete rapporte dans d'autres travaux, les auteurs n'ont pas detecte de desequilibre de liaison significatif entre les deux haplotypes d'ADNmt les plus frequents et les rearrangements chromosomiques chez ces deux populations. Les auteurs concluent que le desequilibre de liaison n'est pas un phenomene generalise au sein des populations naturelles du D. subobscura et ils discutent comment des co-adaptations transitoires, des pressions de selection specifiques d'un environnement et la demographie pourraient contribuer a des desequilibres de liaison specifiques de certaines populations.
Abstract_FL La structure génétique chez le Drosophila subobscura de la péninsule balkanique a été étudiée au moyen du polymorphisme de site de restriction au sein de l’ADN mitochondrial chez des populations provenant de la gorge de la rivière Derventa ou de la gorge Sicevo (Serbie). Afin d’étudier le rôle des interactions cytonucléaires dans l’établissement de la variabilité au sein de l’ADN mitochondrial chez des populations naturelles de cette espèce, l’étude a été complétée avec l’analyse du déséquilibre de liaison entre les haplotypes mitochondriaux et les inversions chromosomiques. Comme chez d’autres populations du D. subobscura, deux haplotypes principaux (I et II) ont été trouvés, accompagnés d’une série d’haplotypes moins répandus. Les fréquences des haplotypes I et II étaient respectivement de 25,8 % et 71,0 % au sein de la population de la gorge de la rivière Derventa et de 32,4 % et 58,1 % respectivement chez la population de la gorge Sicevo. Un des haplotypes présentait une grande insertion (2,7 kb) dans la région riche en A+T. La distribution des fréquences des deux haplotypes ne différait pas significativement de la neutralité. Contrairement à ce qui a été rapporté dans d’autres travaux, les auteurs n’ont pas détecté de déséquilibre de liaison significatif entre les deux haplotypes d’ADNmt les plus fréquents et les réarrangements chromosomiques chez ces deux populations. Les auteurs concluent que le déséquilibre de liaison n’est pas un phénomène généralisé au sein des populations naturelles du D. subobscura et ils discutent comment des co-adaptations transitoires, des pressions de sélection spécifiques d’un environnement et la démographie pourraient contribuer à des déséquilibres de liaison spécifiques de certaines populations.
Audience Academic
Author Dimitrijević, Danica
Jovanović, Miloš
Kenig, Bojan
Jelić, Mihailo
Castro, José A
Kurbalija Novičić, Zorana
Savić Veselinović, Marija
Stamenković-Radak, Marina
Andjelković, Marko
Milovanović, Dragomir
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Snippet The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in...
The genetic structure of Drosophila subobscura from the Balkan Peninsula was studied with respect to restriction site polymorphism of mitochondrial DNA in...
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SubjectTerms ADNmt
Analysis
Animal genetics
Animals
Chromosomes
Chromosomes - genetics
co-adaptation
coadaptation
cytonuclear interactions
Deoxyribonucleic acid
DNA
DNA, Mitochondrial - genetics
Drosophila
Drosophila - genetics
Drosophila subobscura
Frequency distribution
Genetic aspects
Genetic structure
Genetics
Haplotypes
Haplotypes - genetics
Insects
interactions cytonucléaires
inversion polymorphism
Linkage Disequilibrium
Mitochondrial DNA
mtDNA
Natural populations
Physiological aspects
Polymorphism
polymorphisme d’inversion
populations naturelles
Restriction Mapping
Rivers
Serbia
Wolbachia - genetics
Title Absence of linkage disequilibria between chromosomal arrangements and mtDNA haplotypes in natural populations of Drosophila subobscura from the Balkan Peninsula
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