HH-suite3 for fast remote homology detection and deep protein annotation - Steinegger, Martin; Meier, Markus; Mirdita, Milot; Vöhringer, Harald; Haunsberger, Stephan J.; Söding, Johannes (BMC bioinformatics, 2019)
Keywords: Algorithm; Algorithms; Alignment; Amino acid sequence; Amino acid sequencing; Annotations; Computer programs; Explosions; Freeware; Genomics; Homology; Homology (Biology); Homology detection; Markov chains; Markov processes; Message passing; Methods; Observations; Open source software; Parallel processing; Profile HMM; Protein alignment; Protein folding; Protein structure; Proteins; Searching; Sequence search; SIMD; Software; Software packages; Source code; Structure-function relationships; Suites (Software); Viterbi algorithm detectors; United States