Epidemiology of severe acute respiratory infections from hospital-based surveillance in Madagascar, November 2010 to July 2013
Few comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at identifying etiologies and describing clinical features of SARI-associated hospitalization in Madagascar. It is a prospective surveillance of SARI in 2 h...
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Published in | PloS one Vol. 13; no. 11; p. e0205124 |
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Main Authors | , , , , , , , , , , , , , , , |
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21.11.2018
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Abstract | Few comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at identifying etiologies and describing clinical features of SARI-associated hospitalization in Madagascar.
It is a prospective surveillance of SARI in 2 hospitals for 3 years. Nasopharyngeal swabs, sputum, and blood were collected from SARI patients enrolled and tested for viruses and bacteria. Epidemiological and clinical information were obtained from case report forms.
Overall, 876 patients were enrolled in the study, of which 83.1% (728/876) were tested positive for at least one pathogen. Viral and bacterial infections occurred in 76.1% (667/876) and 35.8% (314/876) of tested samples, respectively. Among all detected viruses, respiratory syncytial virus (RSV) was the most common (37.7%; 348/924) followed by influenza virus A (FLUA, 18.4%; 170/924), rhinovirus (RV, 13.5%; 125/924), and adenovirus (ADV, 8.3%; 77/924). Among bacteria, Streptococcus pneumoniae (S. pneumoniae, 50.3%, 189/370) was the most detected followed by Haemophilus influenzae type b (Hib, 21.4%; 79/370), and Klebsiella (4.6%; 17/370). Other Streptococcus species were found in 8.1% (30/370) of samples. Compared to patients aged less than 5 years, older age groups were significantly less infected with RSV. On the other hand, patients aged more than 64 years (OR = 3.66) were at higher risk to be infected with FLUA, while those aged 15-29 years (OR = 3.22) and 30-64 years (OR = 2.39) were more likely to be infected with FLUB (influenza virus B).
The frequency of influenza viruses detected among SARI patients aged 65 years and more highlights the need for health authorities to develop strategies to reduce morbidity amongst at-risk population through vaccine recommendation. Amongst young children, the demonstrated burden of RSV should guide clinicians for a better case management of children. These findings reveal the need to develop point-of-care tests to avoid overuse of antibiotics and to promote vaccine that could reduce drastically the RSV hospitalizations. |
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AbstractList | Few comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at identifying etiologies and describing clinical features of SARI-associated hospitalization in Madagascar.
It is a prospective surveillance of SARI in 2 hospitals for 3 years. Nasopharyngeal swabs, sputum, and blood were collected from SARI patients enrolled and tested for viruses and bacteria. Epidemiological and clinical information were obtained from case report forms.
Overall, 876 patients were enrolled in the study, of which 83.1% (728/876) were tested positive for at least one pathogen. Viral and bacterial infections occurred in 76.1% (667/876) and 35.8% (314/876) of tested samples, respectively. Among all detected viruses, respiratory syncytial virus (RSV) was the most common (37.7%; 348/924) followed by influenza virus A (FLUA, 18.4%; 170/924), rhinovirus (RV, 13.5%; 125/924), and adenovirus (ADV, 8.3%; 77/924). Among bacteria, Streptococcus pneumoniae (S. pneumoniae, 50.3%, 189/370) was the most detected followed by Haemophilus influenzae type b (Hib, 21.4%; 79/370), and Klebsiella (4.6%; 17/370). Other Streptococcus species were found in 8.1% (30/370) of samples. Compared to patients aged less than 5 years, older age groups were significantly less infected with RSV. On the other hand, patients aged more than 64 years (OR = 3.66) were at higher risk to be infected with FLUA, while those aged 15-29 years (OR = 3.22) and 30-64 years (OR = 2.39) were more likely to be infected with FLUB (influenza virus B).
The frequency of influenza viruses detected among SARI patients aged 65 years and more highlights the need for health authorities to develop strategies to reduce morbidity amongst at-risk population through vaccine recommendation. Amongst young children, the demonstrated burden of RSV should guide clinicians for a better case management of children. These findings reveal the need to develop point-of-care tests to avoid overuse of antibiotics and to promote vaccine that could reduce drastically the RSV hospitalizations. BACKGROUND:Few comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at identifying etiologies and describing clinical features of SARI-associated hospitalization in Madagascar.METHODS:It is a prospective surveillance of SARI in 2 hospitals for 3 years. Nasopharyngeal swabs, sputum, and blood were collected from SARI patients enrolled and tested for viruses and bacteria. Epidemiological and clinical information were obtained from case report forms.RESULTS:Overall, 876 patients were enrolled in the study, of which 83.1% (728/876) were tested positive for at least one pathogen. Viral and bacterial infections occurred in 76.1% (667/876) and 35.8% (314/876) of tested samples, respectively. Among all detected viruses, respiratory syncytial virus (RSV) was the most common (37.7%; 348/924) followed by influenza virus A (FLUA, 18.4%; 170/924), rhinovirus (RV, 13.5%; 125/924), and adenovirus (ADV, 8.3%; 77/924). Among bacteria, Streptococcus pneumoniae (S. pneumoniae, 50.3%, 189/370) was the most detected followed by Haemophilus influenzae type b (Hib, 21.4%; 79/370), and Klebsiella (4.6%; 17/370). Other Streptococcus species were found in 8.1% (30/370) of samples. Compared to patients aged less than 5 years, older age groups were significantly less infected with RSV. On the other hand, patients aged more than 64 years (OR = 3.66) were at higher risk to be infected with FLUA, while those aged 15-29 years (OR = 3.22) and 30-64 years (OR = 2.39) were more likely to be infected with FLUB (influenza virus B).CONCLUSION:The frequency of influenza viruses detected among SARI patients aged 65 years and more highlights the need for health authorities to develop strategies to reduce morbidity amongst at-risk population through vaccine recommendation. Amongst young children, the demonstrated burden of RSV should guide clinicians for a better case management of children. These findings reveal the need to develop point-of-care tests to avoid overuse of antibiotics and to promote vaccine that could reduce drastically the RSV hospitalizations. BACKGROUNDFew comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at identifying etiologies and describing clinical features of SARI-associated hospitalization in Madagascar.METHODSIt is a prospective surveillance of SARI in 2 hospitals for 3 years. Nasopharyngeal swabs, sputum, and blood were collected from SARI patients enrolled and tested for viruses and bacteria. Epidemiological and clinical information were obtained from case report forms.RESULTSOverall, 876 patients were enrolled in the study, of which 83.1% (728/876) were tested positive for at least one pathogen. Viral and bacterial infections occurred in 76.1% (667/876) and 35.8% (314/876) of tested samples, respectively. Among all detected viruses, respiratory syncytial virus (RSV) was the most common (37.7%; 348/924) followed by influenza virus A (FLUA, 18.4%; 170/924), rhinovirus (RV, 13.5%; 125/924), and adenovirus (ADV, 8.3%; 77/924). Among bacteria, Streptococcus pneumoniae (S. pneumoniae, 50.3%, 189/370) was the most detected followed by Haemophilus influenzae type b (Hib, 21.4%; 79/370), and Klebsiella (4.6%; 17/370). Other Streptococcus species were found in 8.1% (30/370) of samples. Compared to patients aged less than 5 years, older age groups were significantly less infected with RSV. On the other hand, patients aged more than 64 years (OR = 3.66) were at higher risk to be infected with FLUA, while those aged 15-29 years (OR = 3.22) and 30-64 years (OR = 2.39) were more likely to be infected with FLUB (influenza virus B).CONCLUSIONThe frequency of influenza viruses detected among SARI patients aged 65 years and more highlights the need for health authorities to develop strategies to reduce morbidity amongst at-risk population through vaccine recommendation. Amongst young children, the demonstrated burden of RSV should guide clinicians for a better case management of children. These findings reveal the need to develop point-of-care tests to avoid overuse of antibiotics and to promote vaccine that could reduce drastically the RSV hospitalizations. Background Few comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at identifying etiologies and describing clinical features of SARI-associated hospitalization in Madagascar. Methods It is a prospective surveillance of SARI in 2 hospitals for 3 years. Nasopharyngeal swabs, sputum, and blood were collected from SARI patients enrolled and tested for viruses and bacteria. Epidemiological and clinical information were obtained from case report forms. Results Overall, 876 patients were enrolled in the study, of which 83.1% (728/876) were tested positive for at least one pathogen. Viral and bacterial infections occurred in 76.1% (667/876) and 35.8% (314/876) of tested samples, respectively. Among all detected viruses, respiratory syncytial virus (RSV) was the most common (37.7%; 348/924) followed by influenza virus A (FLUA, 18.4%; 170/924), rhinovirus (RV, 13.5%; 125/924), and adenovirus (ADV, 8.3%; 77/924). Among bacteria, Streptococcus pneumoniae (S. pneumoniae, 50.3%, 189/370) was the most detected followed by Haemophilus influenzae type b (Hib, 21.4%; 79/370), and Klebsiella (4.6%; 17/370). Other Streptococcus species were found in 8.1% (30/370) of samples. Compared to patients aged less than 5 years, older age groups were significantly less infected with RSV. On the other hand, patients aged more than 64 years (OR = 3.66) were at higher risk to be infected with FLUA, while those aged 15–29 years (OR = 3.22) and 30–64 years (OR = 2.39) were more likely to be infected with FLUB (influenza virus B). Conclusion The frequency of influenza viruses detected among SARI patients aged 65 years and more highlights the need for health authorities to develop strategies to reduce morbidity amongst at-risk population through vaccine recommendation. Amongst young children, the demonstrated burden of RSV should guide clinicians for a better case management of children. These findings reveal the need to develop point-of-care tests to avoid overuse of antibiotics and to promote vaccine that could reduce drastically the RSV hospitalizations. |
Author | Richard, Vincent Rakotonanahary, Dina Arinalina Ratovoson, Rila Guillebaud, Julia Irinantenaina, Judickaelle Ramparany, Lovasoa Randrianirina, Frédérique Rajatonirina, Soatiana Andriatahina, Todisoa Ratsima, Elisoa Hariniaina Andrianirina, Zo Zafitsara Rakotoariniaina, Hervé Orelle, Arnaud Razanajatovo, Norosoa Harline Harimanana, Aina Heraud, Jean-Michel |
AuthorAffiliation | 5 Secondary Level Public Hospital, Moramanga, Madagascar 1 National Influenza Centre, Virology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar 2 Epidemiology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar 4 Soavinandriana Hospital, Antananarivo, Madagascar 3 Center for Biological Analysis, Pasteur Institute of Madagascar, Antananarivo, Madagascar Defense Threat Reduction Agency, UNITED STATES |
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Author_xml | – sequence: 1 givenname: Norosoa Harline orcidid: 0000-0003-2063-3932 surname: Razanajatovo fullname: Razanajatovo, Norosoa Harline organization: National Influenza Centre, Virology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 2 givenname: Julia surname: Guillebaud fullname: Guillebaud, Julia organization: National Influenza Centre, Virology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 3 givenname: Aina surname: Harimanana fullname: Harimanana, Aina organization: Epidemiology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 4 givenname: Soatiana surname: Rajatonirina fullname: Rajatonirina, Soatiana organization: Epidemiology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 5 givenname: Elisoa Hariniaina surname: Ratsima fullname: Ratsima, Elisoa Hariniaina organization: Center for Biological Analysis, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 6 givenname: Zo Zafitsara surname: Andrianirina fullname: Andrianirina, Zo Zafitsara organization: Soavinandriana Hospital, Antananarivo, Madagascar – sequence: 7 givenname: Hervé surname: Rakotoariniaina fullname: Rakotoariniaina, Hervé organization: Soavinandriana Hospital, Antananarivo, Madagascar – sequence: 8 givenname: Todisoa surname: Andriatahina fullname: Andriatahina, Todisoa organization: Secondary Level Public Hospital, Moramanga, Madagascar – sequence: 9 givenname: Arnaud surname: Orelle fullname: Orelle, Arnaud organization: National Influenza Centre, Virology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 10 givenname: Rila orcidid: 0000-0002-3867-6343 surname: Ratovoson fullname: Ratovoson, Rila organization: Epidemiology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 11 givenname: Judickaelle surname: Irinantenaina fullname: Irinantenaina, Judickaelle organization: Epidemiology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 12 givenname: Dina Arinalina surname: Rakotonanahary fullname: Rakotonanahary, Dina Arinalina organization: National Influenza Centre, Virology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 13 givenname: Lovasoa surname: Ramparany fullname: Ramparany, Lovasoa organization: Center for Biological Analysis, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 14 givenname: Frédérique surname: Randrianirina fullname: Randrianirina, Frédérique organization: Center for Biological Analysis, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 15 givenname: Vincent surname: Richard fullname: Richard, Vincent organization: Epidemiology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar – sequence: 16 givenname: Jean-Michel surname: Heraud fullname: Heraud, Jean-Michel organization: National Influenza Centre, Virology Unit, Pasteur Institute of Madagascar, Antananarivo, Madagascar |
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Copyright | 2018 Razanajatovo et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. Attribution 2018 Razanajatovo et al 2018 Razanajatovo et al |
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Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 PMCID: PMC6248916 Current address: WHO Regional Office for Africa, Brazzaville, Republic of Congo Competing Interests: The authors have declared that no competing interests exist. Current address: Center for Biological Analysis, Pasteur Institute of Madagascar, Antananarivo, Madagascar Current address: Pasteur Institute in New Caledonia, Nouméa, New Caledonia Current address: Integrated Quality Laboratory Services, Lyon, France These authors are joint senior authors on this work. |
ORCID | 0000-0002-3867-6343 0000-0003-2063-3932 0000-0003-1107-0859 |
OpenAccessLink | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6248916/ |
PMID | 30462659 |
PQID | 2136547293 |
PQPubID | 1436336 |
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PublicationCentury | 2000 |
PublicationDate | 2018-11-21 |
PublicationDateYYYYMMDD | 2018-11-21 |
PublicationDate_xml | – month: 11 year: 2018 text: 2018-11-21 day: 21 |
PublicationDecade | 2010 |
PublicationPlace | United States |
PublicationPlace_xml | – name: United States – name: San Francisco – name: San Francisco, CA USA |
PublicationTitle | PloS one |
PublicationTitleAlternate | PLoS One |
PublicationYear | 2018 |
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References | J Nyamusore (ref30) 2017 H Nair (ref3) 2013; 381 MA Pretorius (ref21) 2012; 206 ref33 ET Martin (ref36) 2013; 207 M Pretorius (ref37) 2016; 75 ref2 L Randrianasolo (ref28) 2010; 10 S Kenmoe (ref27) 2016; 10 RE Black (ref5) 2010; 375 ML McMorrow (ref16) 2015; 212 K McIntosh (ref9) 2002; 346 WS Lim (ref12) 2001; 56 L Simonsen (ref31) 1997; 87 A Bellos (ref34) 2010; 4 S Rajatonirina (ref17) 2013 M Cebey-Lopez (ref22) 2015; 10 DR Feikin (ref15) 2012; 7 BG Williams (ref6) 2002; 2 MJ Cummings (ref29) 2016; 42 I Brini (ref35) 2017; 12 H Nair (ref26) 2010; 375 KL O’Brien (ref8) 2009; 374 J Hoffmann (ref23) 2012; 7 O Ruuskanen (ref10) 1999; 14 I Rudan (ref1) 2008; 86 RF Breiman (ref14) 2015; 15 MD Simpson (ref25) 2016; 3 S Rajatonirina (ref18) 2013; 8 I Rudan (ref4) 2004; 82 T Juven (ref20) 2000; 19 JA Berkley (ref24) 2010; 303 WW Thompson (ref32) 2004; 292 EH Choi (ref11) 2006; 43 L Opatowski (ref13) 2011; 7 NH Razanajatovo (ref19) 2011; 6 JP Watt (ref7) 2009; 374 |
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Snippet | Few comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at identifying... Background Few comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at... BACKGROUNDFew comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at... BACKGROUND:Few comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at... Background Few comprehensive data exist regarding the epidemiology of severe acute respiratory infections (SARI) in low income countries. This study aimed at... |
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Title | Epidemiology of severe acute respiratory infections from hospital-based surveillance in Madagascar, November 2010 to July 2013 |
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