Identifying brain networks in synaptic density PET (11C-UCB-J) with independent component analysis
•ICA identifies covarying source networks of synaptic density in 11C-UCB-J PET data.•Thirteen source networks were validated and identified across independent healthy control samples.•Several source networks showed age-related decline in subject loadings. The human brain is inherently organized into...
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Published in | NeuroImage (Orlando, Fla.) Vol. 237; p. 118167 |
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15.08.2021
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Abstract | •ICA identifies covarying source networks of synaptic density in 11C-UCB-J PET data.•Thirteen source networks were validated and identified across independent healthy control samples.•Several source networks showed age-related decline in subject loadings.
The human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging (rs-fMRI), which are based on blood-oxygen-level-dependent (BOLD) signal fluctuations. 11C-UCB-J PET maps synaptic density via synaptic vesicle protein 2A, which is a more direct structural measure underlying brain networks than BOLD rs-fMRI.
The aim of this study was to identify maximally independent brain source networks, i.e., “spatial patterns with common covariance across subjects”, in 11C-UCB-J data using independent component analysis (ICA), a data-driven analysis method. Using a population of 80 healthy controls, we applied ICA to two 40-sample subsets and compared source network replication across samples. We examined the identified source networks at multiple model orders, as the ideal number of maximally independent components (IC) is unknown. In addition, we investigated the relationship between the strength of the loading weights for each source network and age and sex.
Thirteen source networks replicated across both samples. We determined that a model order of 18 components provided stable, replicable components, whereas estimations above 18 were not stable. Effects of sex were found in two ICs. Nine ICs showed age-related change, with 4 remaining significant after correction for multiple comparison.
This study provides the first evidence that human brain synaptic density can be characterized into organized covariance patterns. Furthermore, we demonstrated that multiple synaptic density source networks are associated with age, which supports the potential utility of ICA to identify biologically relevant synaptic density source networks. |
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AbstractList | The human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging (rs-fMRI), which are based on blood-oxygen-level-dependent (BOLD) signal fluctuations. 11C-UCB-J PET maps synaptic density via synaptic vesicle protein 2A, which is a more direct structural measure underlying brain networks than BOLD rs-fMRI.BACKGROUNDThe human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging (rs-fMRI), which are based on blood-oxygen-level-dependent (BOLD) signal fluctuations. 11C-UCB-J PET maps synaptic density via synaptic vesicle protein 2A, which is a more direct structural measure underlying brain networks than BOLD rs-fMRI.The aim of this study was to identify maximally independent brain source networks, i.e., "spatial patterns with common covariance across subjects", in 11C-UCB-J data using independent component analysis (ICA), a data-driven analysis method. Using a population of 80 healthy controls, we applied ICA to two 40-sample subsets and compared source network replication across samples. We examined the identified source networks at multiple model orders, as the ideal number of maximally independent components (IC) is unknown. In addition, we investigated the relationship between the strength of the loading weights for each source network and age and sex.METHODSThe aim of this study was to identify maximally independent brain source networks, i.e., "spatial patterns with common covariance across subjects", in 11C-UCB-J data using independent component analysis (ICA), a data-driven analysis method. Using a population of 80 healthy controls, we applied ICA to two 40-sample subsets and compared source network replication across samples. We examined the identified source networks at multiple model orders, as the ideal number of maximally independent components (IC) is unknown. In addition, we investigated the relationship between the strength of the loading weights for each source network and age and sex.Thirteen source networks replicated across both samples. We determined that a model order of 18 components provided stable, replicable components, whereas estimations above 18 were not stable. Effects of sex were found in two ICs. Nine ICs showed age-related change, with 4 remaining significant after correction for multiple comparison.RESULTSThirteen source networks replicated across both samples. We determined that a model order of 18 components provided stable, replicable components, whereas estimations above 18 were not stable. Effects of sex were found in two ICs. Nine ICs showed age-related change, with 4 remaining significant after correction for multiple comparison.This study provides the first evidence that human brain synaptic density can be characterized into organized covariance patterns. Furthermore, we demonstrated that multiple synaptic density source networks are associated with age, which supports the potential utility of ICA to identify biologically relevant synaptic density source networks.CONCLUSIONThis study provides the first evidence that human brain synaptic density can be characterized into organized covariance patterns. Furthermore, we demonstrated that multiple synaptic density source networks are associated with age, which supports the potential utility of ICA to identify biologically relevant synaptic density source networks. •ICA identifies covarying source networks of synaptic density in 11C-UCB-J PET data.•Thirteen source networks were validated and identified across independent healthy control samples.•Several source networks showed age-related decline in subject loadings. The human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging (rs-fMRI), which are based on blood-oxygen-level-dependent (BOLD) signal fluctuations. 11C-UCB-J PET maps synaptic density via synaptic vesicle protein 2A, which is a more direct structural measure underlying brain networks than BOLD rs-fMRI. The aim of this study was to identify maximally independent brain source networks, i.e., “spatial patterns with common covariance across subjects”, in 11C-UCB-J data using independent component analysis (ICA), a data-driven analysis method. Using a population of 80 healthy controls, we applied ICA to two 40-sample subsets and compared source network replication across samples. We examined the identified source networks at multiple model orders, as the ideal number of maximally independent components (IC) is unknown. In addition, we investigated the relationship between the strength of the loading weights for each source network and age and sex. Thirteen source networks replicated across both samples. We determined that a model order of 18 components provided stable, replicable components, whereas estimations above 18 were not stable. Effects of sex were found in two ICs. Nine ICs showed age-related change, with 4 remaining significant after correction for multiple comparison. This study provides the first evidence that human brain synaptic density can be characterized into organized covariance patterns. Furthermore, we demonstrated that multiple synaptic density source networks are associated with age, which supports the potential utility of ICA to identify biologically relevant synaptic density source networks. The human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging (rs-fMRI), which are based on blood-oxygen-level-dependent (BOLD) signal fluctuations. C-UCB-J PET maps synaptic density via synaptic vesicle protein 2A, which is a more direct structural measure underlying brain networks than BOLD rs-fMRI. The aim of this study was to identify maximally independent brain source networks, i.e., "spatial patterns with common covariance across subjects", in C-UCB-J data using independent component analysis (ICA), a data-driven analysis method. Using a population of 80 healthy controls, we applied ICA to two 40-sample subsets and compared source network replication across samples. We examined the identified source networks at multiple model orders, as the ideal number of maximally independent components (IC) is unknown. In addition, we investigated the relationship between the strength of the loading weights for each source network and age and sex. Thirteen source networks replicated across both samples. We determined that a model order of 18 components provided stable, replicable components, whereas estimations above 18 were not stable. Effects of sex were found in two ICs. Nine ICs showed age-related change, with 4 remaining significant after correction for multiple comparison. This study provides the first evidence that human brain synaptic density can be characterized into organized covariance patterns. Furthermore, we demonstrated that multiple synaptic density source networks are associated with age, which supports the potential utility of ICA to identify biologically relevant synaptic density source networks. BackgroundThe human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging (rs-fMRI), which are based on blood-oxygen-level-dependent (BOLD) signal fluctuations. 11C-UCB-J PET maps synaptic density via synaptic vesicle protein 2A, which is a more direct structural measure underlying brain networks than BOLD rs-fMRI.MethodsThe aim of this study was to identify maximally independent brain source networks, i.e., “spatial patterns with common covariance across subjects”, in 11C-UCB-J data using independent component analysis (ICA), a data-driven analysis method. Using a population of 80 healthy controls, we applied ICA to two 40-sample subsets and compared source network replication across samples. We examined the identified source networks at multiple model orders, as the ideal number of maximally independent components (IC) is unknown. In addition, we investigated the relationship between the strength of the loading weights for each source network and age and sex.ResultsThirteen source networks replicated across both samples. We determined that a model order of 18 components provided stable, replicable components, whereas estimations above 18 were not stable. Effects of sex were found in two ICs. Nine ICs showed age-related change, with 4 remaining significant after correction for multiple comparison.ConclusionThis study provides the first evidence that human brain synaptic density can be characterized into organized covariance patterns. Furthermore, we demonstrated that multiple synaptic density source networks are associated with age, which supports the potential utility of ICA to identify biologically relevant synaptic density source networks. Background: The human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging (rs-fMRI), which are based on blood-oxygen-level-dependent (BOLD) signal fluctuations. 11C-UCB-J PET maps synaptic density via synaptic vesicle protein 2A, which is a more direct structural measure underlying brain networks than BOLD rs-fMRI. Methods: The aim of this study was to identify maximally independent brain source networks, i.e., “spatial patterns with common covariance across subjects”, in 11C-UCB-J data using independent component analysis (ICA), a data-driven analysis method. Using a population of 80 healthy controls, we applied ICA to two 40-sample subsets and compared source network replication across samples. We examined the identified source networks at multiple model orders, as the ideal number of maximally independent components (IC) is unknown. In addition, we investigated the relationship between the strength of the loading weights for each source network and age and sex. Results: Thirteen source networks replicated across both samples. We determined that a model order of 18 components provided stable, replicable components, whereas estimations above 18 were not stable. Effects of sex were found in two ICs. Nine ICs showed age-related change, with 4 remaining significant after correction for multiple comparison. Conclusion: This study provides the first evidence that human brain synaptic density can be characterized into organized covariance patterns. Furthermore, we demonstrated that multiple synaptic density source networks are associated with age, which supports the potential utility of ICA to identify biologically relevant synaptic density source networks. |
ArticleNumber | 118167 |
Author | Radhakrishnan, Rajiv Esterlis, Irina Carson, Richard E. Matuskey, David Hillmer, Ansel T. van Dyck, Christopher H. D'Souza, Deepak Cyril Holmes, Sophie E. Toyonaga, Takuya Mecca, Adam P. Fang, Xiaotian T. Worhunsky, Patrick D. |
AuthorAffiliation | b Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA a Yale PET Center, Department of Radiology and Biomedical Imaging, Yale University, 801 Howard Avenue, New Haven, CT 06520, USA c Department of Neurology, Yale School of Medicine, New Haven, CT, USA |
AuthorAffiliation_xml | – name: c Department of Neurology, Yale School of Medicine, New Haven, CT, USA – name: b Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA – name: a Yale PET Center, Department of Radiology and Biomedical Imaging, Yale University, 801 Howard Avenue, New Haven, CT 06520, USA |
Author_xml | – sequence: 1 givenname: Xiaotian T. surname: Fang fullname: Fang, Xiaotian T. email: xiaotian.fang@yale.edu organization: Yale PET Center, Department of Radiology and Biomedical Imaging, Yale University, 801 Howard Avenue, New Haven, CT 06520, USA – sequence: 2 givenname: Takuya surname: Toyonaga fullname: Toyonaga, Takuya organization: Yale PET Center, Department of Radiology and Biomedical Imaging, Yale University, 801 Howard Avenue, New Haven, CT 06520, USA – sequence: 3 givenname: Ansel T. surname: Hillmer fullname: Hillmer, Ansel T. organization: Yale PET Center, Department of Radiology and Biomedical Imaging, Yale University, 801 Howard Avenue, New Haven, CT 06520, USA – sequence: 4 givenname: David surname: Matuskey fullname: Matuskey, David organization: Yale PET Center, Department of Radiology and Biomedical Imaging, Yale University, 801 Howard Avenue, New Haven, CT 06520, USA – sequence: 5 givenname: Sophie E. surname: Holmes fullname: Holmes, Sophie E. organization: Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA – sequence: 6 givenname: Rajiv surname: Radhakrishnan fullname: Radhakrishnan, Rajiv organization: Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA – sequence: 7 givenname: Adam P. surname: Mecca fullname: Mecca, Adam P. organization: Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA – sequence: 8 givenname: Christopher H. surname: van Dyck fullname: van Dyck, Christopher H. organization: Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA – sequence: 9 givenname: Deepak Cyril surname: D'Souza fullname: D'Souza, Deepak Cyril organization: Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA – sequence: 10 givenname: Irina surname: Esterlis fullname: Esterlis, Irina organization: Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA – sequence: 11 givenname: Patrick D. surname: Worhunsky fullname: Worhunsky, Patrick D. organization: Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA – sequence: 12 givenname: Richard E. surname: Carson fullname: Carson, Richard E. organization: Yale PET Center, Department of Radiology and Biomedical Imaging, Yale University, 801 Howard Avenue, New Haven, CT 06520, USA |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/34000404$$D View this record in MEDLINE/PubMed |
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Snippet | •ICA identifies covarying source networks of synaptic density in 11C-UCB-J PET data.•Thirteen source networks were validated and identified across independent... The human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging (rs-fMRI), which are... BackgroundThe human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging (rs-fMRI),... Background: The human brain is inherently organized into distinct networks, as reported widely by resting-state functional magnetic resonance imaging... |
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StartPage | 118167 |
SubjectTerms | Adult Age Age Factors Aged Aged, 80 and over Aging Brain - diagnostic imaging Brain - metabolism Brain mapping Female Functional magnetic resonance imaging Humans ICA Independent sample Investigations Male Membrane Glycoproteins - metabolism Metabolism Metabolites Middle Aged Nerve Net - diagnostic imaging Nerve Net - metabolism Nerve Tissue Proteins - metabolism Neuroimaging Plasma Positron emission tomography Positron-Emission Tomography - methods Positron-Emission Tomography - standards Principal components analysis Pyridines - pharmacokinetics Pyrrolidinones - pharmacokinetics Radiopharmaceuticals - pharmacokinetics Registration Reproducibility of Results Sex Factors Signal Processing, Computer-Assisted SV2A Synapse Synapses - metabolism Synaptic density Young Adult |
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Title | Identifying brain networks in synaptic density PET (11C-UCB-J) with independent component analysis |
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