Targeting a cell state common to triple‐negative breast cancers

Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple‐negative breast cancer (TNBC), no frequently recurring aberrations could be identified to make such an approach clinically feasible. Characterized by a highly heterogeneo...

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Published inMolecular systems biology Vol. 11; no. 2; pp. 789 - n/a
Main Authors Muellner, Markus K, Mair, Barbara, Ibrahim, Yasir, Kerzendorfer, Claudia, Lechtermann, Hannelore, Trefzer, Claudia, Klepsch, Freya, Müller, André C, Leitner, Ernestine, Macho‐Maschler, Sabine, Superti‐Furga, Giulio, Bennett, Keiryn L, Baselga, José, Rix, Uwe, Kubicek, Stefan, Colinge, Jacques, Serra, Violeta, Nijman, Sebastian MB
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 01.02.2015
EMBO Press
BlackWell Publishing Ltd
Springer Nature
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Abstract Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple‐negative breast cancer (TNBC), no frequently recurring aberrations could be identified to make such an approach clinically feasible. Characterized by a highly heterogeneous mutational landscape with few common features, many TNBCs cluster together based on their ‘basal‐like’ transcriptional profiles. We therefore hypothesized that targeting TNBC cells on a systems level by exploiting the transcriptional cell state might be a viable strategy to find novel therapies for this highly aggressive disease. We performed a large‐scale chemical genetic screen and identified a group of compounds related to the drug PKC412 (midostaurin). PKC412 induced apoptosis in a subset of TNBC cells enriched for the basal‐like subtype and inhibited tumor growth in vivo . We employed a multi‐omics approach and computational modeling to address the mechanism of action and identified spleen tyrosine kinase (SYK) as a novel and unexpected target in TNBC. Quantitative phosphoproteomics revealed that SYK inhibition abrogates signaling to STAT3, explaining the selectivity for basal‐like breast cancer cells. This non‐oncogene addiction suggests that chemical SYK inhibition may be beneficial for a specific subset of TNBC patients and demonstrates that targeting cell states could be a viable strategy to discover novel treatment strategies. Synopsis A chemical screen and systems approach reveal SYK‐STAT3 signaling as a druggable target in basal‐like breast cancers. The study supports the systems‐based notion that targeting a cell state, rather than a mutational state, can lead to therapeutic target discovery. A chemical screen identifies a set of structurally related small molecules, including the drug midostaurin (PKC412), that target the mesenchymal cell state found in a subset of breast tumors. A multi‐omics approach is combined with computational modeling for examining the drug mechanism of action and reveals the tyrosine kinase SYK as a novel breast cancer target. Phospho‐proteomics analysis shows that SYK is required to maintain STAT3 phosphorylation in basal‐like breast cancer cells. Graphical Abstract A chemical screen and systems approach reveal SYK‐STAT3 signaling as a druggable target in basal‐like breast cancers. The study supports the systems‐based notion that targeting a cell state, rather than a mutational state, can lead to therapeutic target discovery.
AbstractList Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple-negative breast cancer (TNBC), no frequently recurring aberrations could be identified to make such an approach clinically feasible. Characterized by a highly heterogeneous mutational landscape with few common features, many TNBCs cluster together based on their ‘basal-like’ transcriptional profiles. We therefore hypothesized that targeting TNBC cells on a systems level by exploiting the transcriptional cell state might be a viable strategy to find novel therapies for this highly aggressive disease. We performed a large-scale chemical genetic screen and identified a group of compounds related to the drug PKC412 (midostaurin). PKC412 induced apoptosis in a subset of TNBC cells enriched for the basal-like subtype and inhibited tumor growth in vivo. We employed a multi-omics approach and computational modeling to address the mechanism of action and identified spleen tyrosine kinase (SYK) as a novel and unexpected target in TNBC. Quantitative phosphoproteomics revealed that SYK inhibition abrogates signaling to STAT3, explaining the selectivity for basal-like breast cancer cells. This non-oncogene addiction suggests that chemical SYK inhibition may be beneficial for a specific subset of TNBC patients and demonstrates that targeting cell states could be a viable strategy to discover novel treatment strategies.
Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple‐negative breast cancer (TNBC), no frequently recurring aberrations could be identified to make such an approach clinically feasible. Characterized by a highly heterogeneous mutational landscape with few common features, many TNBCs cluster together based on their ‘basal‐like’ transcriptional profiles. We therefore hypothesized that targeting TNBC cells on a systems level by exploiting the transcriptional cell state might be a viable strategy to find novel therapies for this highly aggressive disease. We performed a large‐scale chemical genetic screen and identified a group of compounds related to the drug PKC412 (midostaurin). PKC412 induced apoptosis in a subset of TNBC cells enriched for the basal‐like subtype and inhibited tumor growth in vivo. We employed a multi‐omics approach and computational modeling to address the mechanism of action and identified spleen tyrosine kinase (SYK) as a novel and unexpected target in TNBC. Quantitative phosphoproteomics revealed that SYK inhibition abrogates signaling to STAT3, explaining the selectivity for basal‐like breast cancer cells. This non‐oncogene addiction suggests that chemical SYK inhibition may be beneficial for a specific subset of TNBC patients and demonstrates that targeting cell states could be a viable strategy to discover novel treatment strategies. Synopsis A chemical screen and systems approach reveal SYK‐STAT3 signaling as a druggable target in basal‐like breast cancers. The study supports the systems‐based notion that targeting a cell state, rather than a mutational state, can lead to therapeutic target discovery. A chemical screen identifies a set of structurally related small molecules, including the drug midostaurin (PKC412), that target the mesenchymal cell state found in a subset of breast tumors. A multi‐omics approach is combined with computational modeling for examining the drug mechanism of action and reveals the tyrosine kinase SYK as a novel breast cancer target. Phospho‐proteomics analysis shows that SYK is required to maintain STAT3 phosphorylation in basal‐like breast cancer cells. A chemical screen and systems approach reveal SYK‐STAT3 signaling as a druggable target in basal‐like breast cancers. The study supports the systems‐based notion that targeting a cell state, rather than a mutational state, can lead to therapeutic target discovery.
Abstract Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple‐negative breast cancer (TNBC), no frequently recurring aberrations could be identified to make such an approach clinically feasible. Characterized by a highly heterogeneous mutational landscape with few common features, many TNBCs cluster together based on their ‘basal‐like’ transcriptional profiles. We therefore hypothesized that targeting TNBC cells on a systems level by exploiting the transcriptional cell state might be a viable strategy to find novel therapies for this highly aggressive disease. We performed a large‐scale chemical genetic screen and identified a group of compounds related to the drug PKC412 (midostaurin). PKC412 induced apoptosis in a subset of TNBC cells enriched for the basal‐like subtype and inhibited tumor growth in vivo. We employed a multi‐omics approach and computational modeling to address the mechanism of action and identified spleen tyrosine kinase (SYK) as a novel and unexpected target in TNBC. Quantitative phosphoproteomics revealed that SYK inhibition abrogates signaling to STAT3, explaining the selectivity for basal‐like breast cancer cells. This non‐oncogene addiction suggests that chemical SYK inhibition may be beneficial for a specific subset of TNBC patients and demonstrates that targeting cell states could be a viable strategy to discover novel treatment strategies.
Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple‐negative breast cancer (TNBC), no frequently recurring aberrations could be identified to make such an approach clinically feasible. Characterized by a highly heterogeneous mutational landscape with few common features, many TNBCs cluster together based on their ‘basal‐like’ transcriptional profiles. We therefore hypothesized that targeting TNBC cells on a systems level by exploiting the transcriptional cell state might be a viable strategy to find novel therapies for this highly aggressive disease. We performed a large‐scale chemical genetic screen and identified a group of compounds related to the drug PKC412 (midostaurin). PKC412 induced apoptosis in a subset of TNBC cells enriched for the basal‐like subtype and inhibited tumor growth in vivo . We employed a multi‐omics approach and computational modeling to address the mechanism of action and identified spleen tyrosine kinase (SYK) as a novel and unexpected target in TNBC. Quantitative phosphoproteomics revealed that SYK inhibition abrogates signaling to STAT3, explaining the selectivity for basal‐like breast cancer cells. This non‐oncogene addiction suggests that chemical SYK inhibition may be beneficial for a specific subset of TNBC patients and demonstrates that targeting cell states could be a viable strategy to discover novel treatment strategies. Synopsis A chemical screen and systems approach reveal SYK‐STAT3 signaling as a druggable target in basal‐like breast cancers. The study supports the systems‐based notion that targeting a cell state, rather than a mutational state, can lead to therapeutic target discovery. A chemical screen identifies a set of structurally related small molecules, including the drug midostaurin (PKC412), that target the mesenchymal cell state found in a subset of breast tumors. A multi‐omics approach is combined with computational modeling for examining the drug mechanism of action and reveals the tyrosine kinase SYK as a novel breast cancer target. Phospho‐proteomics analysis shows that SYK is required to maintain STAT3 phosphorylation in basal‐like breast cancer cells. Graphical Abstract A chemical screen and systems approach reveal SYK‐STAT3 signaling as a druggable target in basal‐like breast cancers. The study supports the systems‐based notion that targeting a cell state, rather than a mutational state, can lead to therapeutic target discovery.
Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple-negative breast cancer (TNBC), no frequently recurring aberrations could be identified to make such an approach clinically feasible. Characterized by a highly heterogeneous mutational landscape with few common features, many TNBCs cluster together based on their 'basal-like' transcriptional profiles. We therefore hypothesized that targeting TNBC cells on a systems level by exploiting the transcriptional cell state might be a viable strategy to find novel therapies for this highly aggressive disease. We performed a large-scale chemical genetic screen and identified a group of compounds related to the drug PKC412 (midostaurin). PKC412 induced apoptosis in a subset of TNBC cells enriched for the basal-like subtype and inhibited tumor growth in vivo. We employed a multi-omics approach and computational modeling to address the mechanism of action and identified spleen tyrosine kinase (SYK) as a novel and unexpected target in TNBC. Quantitative phosphoproteomics revealed that SYK inhibition abrogates signaling to STAT3, explaining the selectivity for basal-like breast cancer cells. This non-oncogene addiction suggests that chemical SYK inhibition may be beneficial for a specific subset of TNBC patients and demonstrates that targeting cell states could be a viable strategy to discover novel treatment strategies.Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple-negative breast cancer (TNBC), no frequently recurring aberrations could be identified to make such an approach clinically feasible. Characterized by a highly heterogeneous mutational landscape with few common features, many TNBCs cluster together based on their 'basal-like' transcriptional profiles. We therefore hypothesized that targeting TNBC cells on a systems level by exploiting the transcriptional cell state might be a viable strategy to find novel therapies for this highly aggressive disease. We performed a large-scale chemical genetic screen and identified a group of compounds related to the drug PKC412 (midostaurin). PKC412 induced apoptosis in a subset of TNBC cells enriched for the basal-like subtype and inhibited tumor growth in vivo. We employed a multi-omics approach and computational modeling to address the mechanism of action and identified spleen tyrosine kinase (SYK) as a novel and unexpected target in TNBC. Quantitative phosphoproteomics revealed that SYK inhibition abrogates signaling to STAT3, explaining the selectivity for basal-like breast cancer cells. This non-oncogene addiction suggests that chemical SYK inhibition may be beneficial for a specific subset of TNBC patients and demonstrates that targeting cell states could be a viable strategy to discover novel treatment strategies.
Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple-negative breast cancer (TNBC), no frequently recurring aberrations could be identified to make such an approach clinically feasible. Characterized by a highly heterogeneous mutational landscape with few common features, many TNBCs cluster together based on their ‘basal-like’ transcriptional profiles. We therefore hypothesized that targeting TNBC cells on a systems level by exploiting the transcriptional cell state might be a viable strategy to find novel therapies for this highly aggressive disease. We performed a large-scale chemical genetic screen and identified a group of compounds related to the drug PKC412 (midostaurin). PKC412 induced apoptosis in a subset of TNBC cells enriched for the basal-like subtype and inhibited tumor growth in vivo . We employed a multi-omics approach and computational modeling to address the mechanism of action and identified spleen tyrosine kinase (SYK) as a novel and unexpected target in TNBC. Quantitative phosphoproteomics revealed that SYK inhibition abrogates signaling to STAT3, explaining the selectivity for basal-like breast cancer cells. This non-oncogene addiction suggests that chemical SYK inhibition may be beneficial for a specific subset of TNBC patients and demonstrates that targeting cell states could be a viable strategy to discover novel treatment strategies.
Author Lechtermann, Hannelore
Trefzer, Claudia
Serra, Violeta
Leitner, Ernestine
Kubicek, Stefan
Müller, André C
Kerzendorfer, Claudia
Mair, Barbara
Macho‐Maschler, Sabine
Ibrahim, Yasir
Klepsch, Freya
Colinge, Jacques
Nijman, Sebastian MB
Baselga, José
Muellner, Markus K
Superti‐Furga, Giulio
Bennett, Keiryn L
Rix, Uwe
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Issue 2
Keywords breast cancer
small‐molecule screen
cell state
small-molecule screen
Language English
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Snippet Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple‐negative breast cancer...
Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple-negative breast cancer...
Abstract Some mutations in cancer cells can be exploited for therapeutic intervention. However, for many cancer subtypes, including triple‐negative breast...
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SubjectTerms Addictions
Animals
Antineoplastic Agents - pharmacology
Apoptosis
Apoptosis - drug effects
Breast cancer
Cancer
Cancer therapies
Cell Differentiation - drug effects
Cell Line, Tumor
Cell Proliferation - drug effects
cell state
Cell Survival - drug effects
Clinical trials
Computer applications
Drug Delivery Systems
Drug dosages
EMBO03
EMBO17
EMBO28
Experiments
Female
Gene expression
Gene Expression Profiling
Genetic screening
Humans
Intracellular Signaling Peptides and Proteins - metabolism
Kinases
Leukemia
Life Sciences
Mice
Molecular Docking Simulation
Molecular Targeted Therapy
Mutation
Organic chemistry
Peptides
Protein Interaction Domains and Motifs
Protein kinase C
Protein-tyrosine kinase
Protein-Tyrosine Kinases - metabolism
Proteomics
Proteomics - methods
Selectivity
Sequence Analysis, RNA
Signal Transduction
small‐molecule screen
Spleen
Stat3 protein
STAT3 Transcription Factor - metabolism
Staurosporine - analogs & derivatives
Staurosporine - pharmacology
Studies
Syk Kinase
Syk protein
Transcription
Transforming Growth Factor beta - genetics
Transforming Growth Factor beta - metabolism
Triple Negative Breast Neoplasms - metabolism
Tumors
Tyrosine
Xenograft Model Antitumor Assays
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Title Targeting a cell state common to triple‐negative breast cancers
URI https://link.springer.com/article/10.15252/msb.20145664
https://onlinelibrary.wiley.com/doi/abs/10.15252%2Fmsb.20145664
https://www.ncbi.nlm.nih.gov/pubmed/25699542
https://www.proquest.com/docview/2290195054
https://www.proquest.com/docview/1657328373
https://hal.umontpellier.fr/hal-02276743
https://pubmed.ncbi.nlm.nih.gov/PMC4358660
https://doaj.org/article/034f9bbfb32d4b97b689c5cf0c981ff6
Volume 11
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