Viral-derived DNA invasion and individual variation in an Indonesian population of large flying fox Pteropus vampyrus
Here, we performed next-generation sequencing (NGS) on six large flying foxes (Pteropus vampyrus) collected in Indonesia. Seventy-five virus species in the liver tissue of each specimen were listed. Viral homologous sequences in the bat genome were identified from the listed viruses. This finding pr...
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| Published in | Journal of Veterinary Medical Science Vol. 83; no. 7; pp. 1068 - 1074 |
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| Main Authors | , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
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Japan
JAPANESE SOCIETY OF VETERINARY SCIENCE
2021
Japan Science and Technology Agency The Japanese Society of Veterinary Science |
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| Abstract | Here, we performed next-generation sequencing (NGS) on six large flying foxes (Pteropus vampyrus) collected in Indonesia. Seventy-five virus species in the liver tissue of each specimen were listed. Viral homologous sequences in the bat genome were identified from the listed viruses. This finding provides collateral evidence of viral endogenization into the host genome. We found that two of the six specimens bore partial sequences that were homologous to the plant pathogens Geminiviridae and Luteoviridae. These sequences were absent in the P. vampyrus chromosomal sequences. Hence, plant viral homologous sequences were localized to the hepatocytes as extrachromosomal DNA fragments. Therefore, this suggests that the bat is a potential carrier or vector of plant viruses. The present investigation on wild animals offered novel perspectives on viral invasion, variation, and host interaction. |
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| AbstractList | Here, we performed next-generation sequencing (NGS) on six large flying foxes (Pteropus vampyrus) collected in Indonesia. Seventy-five virus species in the liver tissue of each specimen were listed. Viral homologous sequences in the bat genome were identified from the listed viruses. This finding provides collateral evidence of viral endogenization into the host genome. We found that two of the six specimens bore partial sequences that were homologous to the plant pathogens Geminiviridae and Luteoviridae. These sequences were absent in the P. vampyrus chromosomal sequences. Hence, plant viral homologous sequences were localized to the hepatocytes as extrachromosomal DNA fragments. Therefore, this suggests that the bat is a potential carrier or vector of plant viruses. The present investigation on wild animals offered novel perspectives on viral invasion, variation, and host interaction.Here, we performed next-generation sequencing (NGS) on six large flying foxes (Pteropus vampyrus) collected in Indonesia. Seventy-five virus species in the liver tissue of each specimen were listed. Viral homologous sequences in the bat genome were identified from the listed viruses. This finding provides collateral evidence of viral endogenization into the host genome. We found that two of the six specimens bore partial sequences that were homologous to the plant pathogens Geminiviridae and Luteoviridae. These sequences were absent in the P. vampyrus chromosomal sequences. Hence, plant viral homologous sequences were localized to the hepatocytes as extrachromosomal DNA fragments. Therefore, this suggests that the bat is a potential carrier or vector of plant viruses. The present investigation on wild animals offered novel perspectives on viral invasion, variation, and host interaction. Here, we performed next-generation sequencing (NGS) on six large flying foxes (Pteropus vampyrus) collected in Indonesia. Seventy-five virus species in the liver tissue of each specimen were listed. Viral homologous sequences in the bat genome were identified from the listed viruses. This finding provides collateral evidence of viral endogenization into the host genome. We found that two of the six specimens bore partial sequences that were homologous to the plant pathogens Geminiviridae and Luteoviridae. These sequences were absent in the P. vampyrus chromosomal sequences. Hence, plant viral homologous sequences were localized to the hepatocytes as extrachromosomal DNA fragments. Therefore, this suggests that the bat is a potential carrier or vector of plant viruses. The present investigation on wild animals offered novel perspectives on viral invasion, variation, and host interaction. Here, we performed next-generation sequencing (NGS) on six large flying foxes ( Pteropus vampyrus ) collected in Indonesia. Seventy-five virus species in the liver tissue of each specimen were listed. Viral homologous sequences in the bat genome were identified from the listed viruses. This finding provides collateral evidence of viral endogenization into the host genome. We found that two of the six specimens bore partial sequences that were homologous to the plant pathogens Geminiviridae and Luteoviridae . These sequences were absent in the P. vampyrus chromosomal sequences. Hence, plant viral homologous sequences were localized to the hepatocytes as extrachromosomal DNA fragments. Therefore, this suggests that the bat is a potential carrier or vector of plant viruses. The present investigation on wild animals offered novel perspectives on viral invasion, variation, and host interaction. |
| ArticleNumber | 21-0115 |
| Author | Supratikno AGUNGPRIYONO, Srihadi MAEDA, Ken Ni Luh Putu Ika MAYASARI BASRI, Chaerul HONDO, Eiichi OMATSU, Tsutomu TAKEMAE, Hitoshi MIZUTANI, Tetsuya KOBAYASHI, Ryosuke IIDA, Atsuo KATO, Hirokazu TARIGAN, Ronald SHIMODA, Hiroshi |
| AuthorAffiliation | Faculty of Veterinary Medicine Bogor Agricultural University-IPB University |
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| Author_xml | – sequence: 1 fullname: IIDA, Atsuo organization: Laboratory of Animal Morphology, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8602, Japan – sequence: 2 fullname: TAKEMAE, Hitoshi organization: Laboratory of Animal Morphology, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8602, Japan – sequence: 3 fullname: TARIGAN, Ronald organization: Laboratory of Animal Morphology, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8602, Japan – sequence: 4 fullname: KOBAYASHI, Ryosuke organization: Laboratory of Animal Morphology, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8602, Japan – sequence: 5 fullname: KATO, Hirokazu organization: Biology and Somatology Related Support Section, Nagoya University, Nagoya 464-8602, Japan – sequence: 6 fullname: SHIMODA, Hiroshi organization: Laboratory of Veterinary Microbiology, Joint Faculty of Veterinary Medicine, Yamaguchi University, Yamaguchi 753-8515, Japan – sequence: 7 fullname: OMATSU, Tsutomu organization: Laboratory of Veterinary Microbiology, Cooperative Department of Veterinary Medicine, Tokyo University of Agriculture and Technology, Sawai, Fuchu, Tokyo 183-8509, Japan – sequence: 8 fullname: Supratikno organization: Faculty of Veterinary Medicine Bogor Agricultural University-IPB University, Bogor 16680, Indonesia – sequence: 9 fullname: BASRI, Chaerul organization: Faculty of Veterinary Medicine Bogor Agricultural University-IPB University, Bogor 16680, Indonesia – sequence: 10 fullname: Ni Luh Putu Ika MAYASARI organization: Faculty of Veterinary Medicine Bogor Agricultural University-IPB University, Bogor 16680, Indonesia – sequence: 11 fullname: AGUNGPRIYONO, Srihadi organization: Faculty of Veterinary Medicine Bogor Agricultural University-IPB University, Bogor 16680, Indonesia – sequence: 12 fullname: MAEDA, Ken organization: Laboratory of Veterinary Microbiology, Joint Faculty of Veterinary Medicine, Yamaguchi University, Yamaguchi 753-8515, Japan – sequence: 13 fullname: MIZUTANI, Tetsuya organization: Laboratory of Veterinary Microbiology, Cooperative Department of Veterinary Medicine, Tokyo University of Agriculture and Technology, Sawai, Fuchu, Tokyo 183-8509, Japan – sequence: 14 fullname: HONDO, Eiichi organization: Laboratory of Animal Morphology, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8602, Japan |
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| Cites_doi | 10.1128/CMR.00017-06 10.1371/journal.ppat.1001255 10.1038/nrg3199 10.1038/nature08695 10.3201/eid1204.051181 10.1098/rsbl.2009.0016 10.1128/JVI.02130-18 10.1111/j.1744-7348.2004.tb00323.x 10.1128/JVI.01234-10 10.1038/s41579-019-0189-2 10.1371/journal.pone.0186450 10.1644/1545-1410(2000)642<0001:PV>2.0.CO;2 10.1038/cddiscovery.2016.48 10.1292/jvms.17-0222 10.1007/s007050050168 10.1007/s11262-018-1603-y 10.1098/rspb.2014.2124 10.1371/journal.pone.0069544 10.1292/jvms.16-0643 10.1016/S2666-5247(20)30002-1 10.1016/j.coviro.2018.12.007 10.1292/jvms.17-0665 10.1038/ng1699 10.1016/j.virusres.2015.05.006 10.1128/JVI.01714-18 10.4161/rna.8.2.14514 10.1128/MMBR.00044-17 10.3201/eid0812.010317 10.1006/viro.1997.8937 10.1016/j.cell.2009.06.036 10.1186/s12889-020-08460-8 10.3201/eid1612.091790 10.1016/S1097-2765(00)80161-6 |
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| Keywords | Pteropus vampyrus endogenization virus Indonesia plant virus |
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| References | 13. Gumert, M. D., Fuentes, A. and Jones-Engel, L. 2011. Monkeys on the Edge: Ecology 437 and Management of Long-tailed Macaques and their Interface with Humans, Cambridge 438 University Press, Cambridge. 7. Carlson, C. J. 2020. From PREDICT to prevention, one pandemic later. Lancet Microbe 1: e6–e7. 25. Rahman, S. A., Hassan, S. S., Olival, K. J., Mohamed, M., Chang, L. Y., Hassan, L., Saad, N. M., Shohaimi, S. A., Mamat, Z. C., Naim, M. S., Epstein, J. H., Suri, A. S., Field, H. E., Daszak, P., Henipavirus Ecology Research Group. 2010. Characterization of Nipah virus from naturally infected Pteropus vampyrus bats, Malaysia. Emerg. Infect. Dis. 16: 1990–1993. 23. Ono, R., Nakamura, K., Inoue, K., Naruse, M., Usami, T., Wakisaka-Saito, N., Hino, T., Suzuki-Migishima, R., Ogonuki, N., Miki, H., Kohda, T., Ogura, A., Yokoyama, M., Kaneko-Ishino, T. and Ishino, F. 2006. Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality. Nat. Genet. 38: 101–106. 20. Johnson, W. E. 2019. Origins and evolutionary consequences of ancient endogenous retroviruses. Nat. Rev. Microbiol. 17: 355–370. 29. Stevens, M., Hallsworth, P. B. and Smith, H. G. 2004. The effects of Beet mild yellowing virus and Beet chlorosis virus on the yield of UK field‐grown sugar beet in 1997,1999 and 2000. Ann. Appl. Biol. 144: 113–119. 14. Han, H. J., Wen, H. L., Zhou, C. M., Chen, F. F., Luo, L. M., Liu, J. W. and Yu, X. J. 2015. Bats as reservoirs of severe emerging infectious diseases. Virus Res. 205: 1–6. 5. Becher, P. and Tautz, N. 2011. RNA recombination in pestiviruses: cellular RNA sequences in viral genomes highlight the role of host factors for viral persistence and lethal disease. RNA Biol. 8: 216–224. 9. Feschotte, C. and Gilbert, C. 2012. Endogenous viruses: insights into viral evolution and impact on host biology. Nat. Rev. Genet. 13: 283–296. Published 2012: 16. 19. Isken, O., Postel, A., Bruhn, B., Lattwein, E., Becher, P. and Tautz, N. 2019. CRISPR/Cas9-mediated knockout of DNAJC14 verifies this chaperone as a pivotal host factor for RNA replication of pestiviruses. J. Virol. 93: e01714–e01718. 24. Plowright, R. K., Eby, P., Hudson, P. J., Smith, I. L., Westcott, D., Bryden, W. L., Middleton, D., Reid, P. A., McFarlane, R. A., Martin, G., Tabor, G. M., Skerratt, L. F., Anderson, D. L., Crameri, G., Quammen, D., Jordan, D., Freeman, P., Wang, L. F., Epstein, J. H., Marsh, G. A., Kung, N. Y. and McCallum, H. 2015. Ecological dynamics of emerging bat virus spillover. Proc. Biol. Sci. 282: 20142124. 26. Sendow, I., Field, H. E., Curran, J., Darminto, ., Morrissy, C., Meehan, G., Buick, T. and Daniels, P. 2006. Henipavirus in Pteropus vampyrus bats, Indonesia. Emerg. Infect. Dis. 12: 711–712. 1. Akem, E. S. and Pemunta, N. V. 2020. The bat meat chain and perceptions of the risk of contracting Ebola in the Mount Cameroon region. BMC Public Health 20: 593. 2. Allocati, N., Petrucci, A. G., Di Giovanni, P., Masulli, M., Di Ilio, C. and De Laurenzi, V. 2016. Bat-man disease transmission: zoonotic pathogens from wildlife reservoirs to human populations. Cell Death Discov. 2: 16048. 18. Horie, M., Honda, T., Suzuki, Y., Kobayashi, Y., Daito, T., Oshida, T., Ikuta, K., Jern, P., Gojobori, T., Coffin, J. M. and Tomonaga, K. 2010. Endogenous non-retroviral RNA virus elements in mammalian genomes. Nature 463: 84–87. 31. Tycowski, K. T., You, Z. H., Graham, P. J. and Steitz, J. A. 1998. Modification of U6 spliceosomal RNA is guided by other small RNAs. Mol. Cell 2: 629–638. 3. Baba, K., Nakaya, Y., Shojima, T., Muroi, Y., Kizaki, K., Hashizume, K., Imakawa, K. and Miyazawa, T. 2011. Identification of novel endogenous betaretroviruses which are transcribed in the bovine placenta. J. Virol. 85: 1237–1245. 33. Wang, L. F. and Anderson, D. E. 2019. Viruses in bats and potential spillover to animals and humans. Curr. Opin. Virol. 34: 79–89. 16. Hengjan, Y., Pramono, D., Takemae, H., Kobayashi, R., Iida, K., Ando, T., Kasmono, S., Basri, C., Fitriana, Y. S., Arifin, E. M. Z., Ohmori, Y., Maeda, K., Agungpriyono, S. and Hondo, E. 2017. Daytime behavior of Pteropus vampyrus in a natural habitat: the driver of viral transmission. J. Vet. Med. Sci. 79: 1125–1133. 11. Goodwin, R. E. 1979. The bats of Timor: Systematics and ecology. Bull. AMNH. 163: 2. 17. Hengjan, Y., Saputra, V., Mirsageri, M., Pramono, D., Kasmono, S., Basri, C., Ando, T., Ohmori, Y., Agungpriyono, S. and Hondo, E. 2018. Nighttime behavioral study of flying foxes on the southern coast of West Java, Indonesia. J. Vet. Med. Sci. 80: 1146–1152. 21. Kondoh, T., Manzoor, R., Nao, N., Maruyama, J., Furuyama, W., Miyamoto, H., Shigeno, A., Kuroda, M., Matsuno, K., Fujikura, D., Kajihara, M., Yoshida, R., Igarashi, M. and Takada, A. 2017. Putative endogenous filovirus VP35-like protein potentially functions as an IFN antagonist but not a polymerase cofactor. PLoS One 12: e0186450. 32. Virgin, H. W., Wherry, E. J. and Ahmed, R. 2009. Redefining chronic viral infection. Cell 138: 30–50. 28. Smith, J. D. and Gregory, T. R. 2009. The genome sizes of megabats (Chiroptera: Pteropodidae) are remarkably constrained. Biol. Lett. 5: 347–351. 4. Basri, C., Arifin, E. M. Z., Takemae, H., Hengjan, Y., Iida, K., Sudarnika, E., Zahid, A., Soejoedono, R. D., Susetya, H., Sumiarto, B., Kobayashi, R., Agungpriyono, S. and Hondo, E. 2017. Potential risk of viral transmission from flying foxes to domestic animals and humans on the southern coast of West Java, Indonesia. J. Vet. Med. Sci. 79: 1615–1626. 10. Ghanim, M., Morin, S., Zeidan, M. and Czosnek, H. 1998. Evidence for transovarial transmission of tomato yellow leaf curl virus by its vector, the whitefly Bemisia tabaci. Virology 240: 295–303. 6. Calisher, C. H., Childs, J. E., Field, H. E., Holmes, K. V. and Schountz, T. 2006. Bats: important reservoir hosts of emerging viruses. Clin. Microbiol. Rev. 19: 531–545. 12. Greenwood, A. D., Ishida, Y., O’Brien, S. P., Roca, A. L. and Eiden, M. V. 2017. Transmission, evolution, and endogenization: Lessons learned from recent retroviral invasions. Microbiol. Mol. Biol. Rev. 82: e00044–e17. 34. Yi, Z., Sperzel, L., Nürnberger, C., Bredenbeek, P. J., Lubick, K. J., Best, S. M., Stoyanov, C. T., Law, L. M., Yuan, Z., Rice, C. M. and MacDonald, M. R. 2011. Identification and characterization of the host protein DNAJC14 as a broadly active flavivirus replication modulator. PLoS Pathog. 7: e1001255. 35. Yoshikawa, G., Blanc-Mathieu, R., Song, C., Kayama, Y., Mochizuki, T., Murata, K., Ogata, H. and Takemura, M. 2019. Medusavirus, a novel large DNA virus discovered from hot spring water. J. Virol. 93: e02130-18. 27. Sendow, I., Ratnawati, A., Taylor, T., Adjid, R. M., Saepulloh, M., Barr, J., Wong, F., Daniels, P. and Field, H. 2013. Nipah virus in the fruit bat Pteropus vampyrus in Sumatera, Indonesia. PLoS One 8: e69544. 8. Czosnek, H. and Laterrot, H. 1997. A worldwide survey of tomato yellow leaf curl viruses. Arch. Virol. 142: 1391–1406. 22. Kunz, T. and Jones, D. 2000. Pteropus vampyrus. Mamm. Species 642: 1–6. 15. Haydon, D. T., Cleaveland, S., Taylor, L. H. and Laurenson, M. K. 2002. Identifying reservoirs of infection: a conceptual and practical challenge. Emerg. Infect. Dis. 8: 1468–1473. 30. Takemae, H., Basri, C., Mayasari, N. L. P. I., Tarigan, R., Shimoda, H., Omatsu, T., Supratikno, ., Pramono, D., Cahyadi, D. D., Kobayashi, R., Iida, K., Mizutani, T., Maeda, K., Agungpriyono, S. and Hondo, E. 2018. Isolation of Pteropine orthoreovirus from Pteropus vampyrus in Garut, Indonesia. Virus Genes 54: 823–827. 22 23 24 25 26 27 28 29 30 31 10 32 11 33 12 34 13 35 14 15 16 17 18 19 1 2 3 4 5 6 7 8 9 20 21 |
| References_xml | – reference: 26. Sendow, I., Field, H. E., Curran, J., Darminto, ., Morrissy, C., Meehan, G., Buick, T. and Daniels, P. 2006. Henipavirus in Pteropus vampyrus bats, Indonesia. Emerg. Infect. Dis. 12: 711–712. – reference: 4. Basri, C., Arifin, E. M. Z., Takemae, H., Hengjan, Y., Iida, K., Sudarnika, E., Zahid, A., Soejoedono, R. D., Susetya, H., Sumiarto, B., Kobayashi, R., Agungpriyono, S. and Hondo, E. 2017. Potential risk of viral transmission from flying foxes to domestic animals and humans on the southern coast of West Java, Indonesia. J. Vet. Med. Sci. 79: 1615–1626. – reference: 19. Isken, O., Postel, A., Bruhn, B., Lattwein, E., Becher, P. and Tautz, N. 2019. CRISPR/Cas9-mediated knockout of DNAJC14 verifies this chaperone as a pivotal host factor for RNA replication of pestiviruses. J. Virol. 93: e01714–e01718. – reference: 22. Kunz, T. and Jones, D. 2000. Pteropus vampyrus. Mamm. Species 642: 1–6. – reference: 3. Baba, K., Nakaya, Y., Shojima, T., Muroi, Y., Kizaki, K., Hashizume, K., Imakawa, K. and Miyazawa, T. 2011. Identification of novel endogenous betaretroviruses which are transcribed in the bovine placenta. J. Virol. 85: 1237–1245. – reference: 9. Feschotte, C. and Gilbert, C. 2012. Endogenous viruses: insights into viral evolution and impact on host biology. Nat. Rev. Genet. 13: 283–296. Published 2012: 16. – reference: 29. Stevens, M., Hallsworth, P. B. and Smith, H. G. 2004. The effects of Beet mild yellowing virus and Beet chlorosis virus on the yield of UK field‐grown sugar beet in 1997,1999 and 2000. Ann. Appl. Biol. 144: 113–119. – reference: 16. Hengjan, Y., Pramono, D., Takemae, H., Kobayashi, R., Iida, K., Ando, T., Kasmono, S., Basri, C., Fitriana, Y. S., Arifin, E. M. Z., Ohmori, Y., Maeda, K., Agungpriyono, S. and Hondo, E. 2017. Daytime behavior of Pteropus vampyrus in a natural habitat: the driver of viral transmission. J. Vet. Med. Sci. 79: 1125–1133. – reference: 31. Tycowski, K. T., You, Z. H., Graham, P. J. and Steitz, J. A. 1998. Modification of U6 spliceosomal RNA is guided by other small RNAs. Mol. Cell 2: 629–638. – reference: 5. Becher, P. and Tautz, N. 2011. RNA recombination in pestiviruses: cellular RNA sequences in viral genomes highlight the role of host factors for viral persistence and lethal disease. RNA Biol. 8: 216–224. – reference: 30. Takemae, H., Basri, C., Mayasari, N. L. P. I., Tarigan, R., Shimoda, H., Omatsu, T., Supratikno, ., Pramono, D., Cahyadi, D. D., Kobayashi, R., Iida, K., Mizutani, T., Maeda, K., Agungpriyono, S. and Hondo, E. 2018. Isolation of Pteropine orthoreovirus from Pteropus vampyrus in Garut, Indonesia. Virus Genes 54: 823–827. – reference: 14. Han, H. J., Wen, H. L., Zhou, C. M., Chen, F. F., Luo, L. M., Liu, J. W. and Yu, X. J. 2015. Bats as reservoirs of severe emerging infectious diseases. Virus Res. 205: 1–6. – reference: 21. Kondoh, T., Manzoor, R., Nao, N., Maruyama, J., Furuyama, W., Miyamoto, H., Shigeno, A., Kuroda, M., Matsuno, K., Fujikura, D., Kajihara, M., Yoshida, R., Igarashi, M. and Takada, A. 2017. Putative endogenous filovirus VP35-like protein potentially functions as an IFN antagonist but not a polymerase cofactor. PLoS One 12: e0186450. – reference: 34. Yi, Z., Sperzel, L., Nürnberger, C., Bredenbeek, P. J., Lubick, K. J., Best, S. M., Stoyanov, C. T., Law, L. M., Yuan, Z., Rice, C. M. and MacDonald, M. R. 2011. Identification and characterization of the host protein DNAJC14 as a broadly active flavivirus replication modulator. PLoS Pathog. 7: e1001255. – reference: 32. Virgin, H. W., Wherry, E. J. and Ahmed, R. 2009. Redefining chronic viral infection. Cell 138: 30–50. – reference: 28. Smith, J. D. and Gregory, T. R. 2009. The genome sizes of megabats (Chiroptera: Pteropodidae) are remarkably constrained. Biol. Lett. 5: 347–351. – reference: 1. Akem, E. S. and Pemunta, N. V. 2020. The bat meat chain and perceptions of the risk of contracting Ebola in the Mount Cameroon region. BMC Public Health 20: 593. – reference: 12. Greenwood, A. D., Ishida, Y., O’Brien, S. P., Roca, A. L. and Eiden, M. V. 2017. Transmission, evolution, and endogenization: Lessons learned from recent retroviral invasions. Microbiol. Mol. Biol. Rev. 82: e00044–e17. – reference: 18. Horie, M., Honda, T., Suzuki, Y., Kobayashi, Y., Daito, T., Oshida, T., Ikuta, K., Jern, P., Gojobori, T., Coffin, J. M. and Tomonaga, K. 2010. Endogenous non-retroviral RNA virus elements in mammalian genomes. Nature 463: 84–87. – reference: 10. Ghanim, M., Morin, S., Zeidan, M. and Czosnek, H. 1998. Evidence for transovarial transmission of tomato yellow leaf curl virus by its vector, the whitefly Bemisia tabaci. Virology 240: 295–303. – reference: 8. Czosnek, H. and Laterrot, H. 1997. A worldwide survey of tomato yellow leaf curl viruses. Arch. Virol. 142: 1391–1406. – reference: 20. Johnson, W. E. 2019. Origins and evolutionary consequences of ancient endogenous retroviruses. Nat. Rev. Microbiol. 17: 355–370. – reference: 2. Allocati, N., Petrucci, A. G., Di Giovanni, P., Masulli, M., Di Ilio, C. and De Laurenzi, V. 2016. Bat-man disease transmission: zoonotic pathogens from wildlife reservoirs to human populations. Cell Death Discov. 2: 16048. – reference: 25. Rahman, S. A., Hassan, S. S., Olival, K. J., Mohamed, M., Chang, L. Y., Hassan, L., Saad, N. M., Shohaimi, S. A., Mamat, Z. C., Naim, M. S., Epstein, J. H., Suri, A. S., Field, H. E., Daszak, P., Henipavirus Ecology Research Group. 2010. Characterization of Nipah virus from naturally infected Pteropus vampyrus bats, Malaysia. Emerg. Infect. Dis. 16: 1990–1993. – reference: 15. Haydon, D. T., Cleaveland, S., Taylor, L. H. and Laurenson, M. K. 2002. Identifying reservoirs of infection: a conceptual and practical challenge. Emerg. Infect. Dis. 8: 1468–1473. – reference: 23. Ono, R., Nakamura, K., Inoue, K., Naruse, M., Usami, T., Wakisaka-Saito, N., Hino, T., Suzuki-Migishima, R., Ogonuki, N., Miki, H., Kohda, T., Ogura, A., Yokoyama, M., Kaneko-Ishino, T. and Ishino, F. 2006. Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality. Nat. Genet. 38: 101–106. – reference: 6. Calisher, C. H., Childs, J. E., Field, H. E., Holmes, K. V. and Schountz, T. 2006. Bats: important reservoir hosts of emerging viruses. Clin. Microbiol. Rev. 19: 531–545. – reference: 24. Plowright, R. K., Eby, P., Hudson, P. J., Smith, I. L., Westcott, D., Bryden, W. L., Middleton, D., Reid, P. A., McFarlane, R. A., Martin, G., Tabor, G. M., Skerratt, L. F., Anderson, D. L., Crameri, G., Quammen, D., Jordan, D., Freeman, P., Wang, L. F., Epstein, J. H., Marsh, G. A., Kung, N. Y. and McCallum, H. 2015. Ecological dynamics of emerging bat virus spillover. Proc. Biol. Sci. 282: 20142124. – reference: 13. Gumert, M. D., Fuentes, A. and Jones-Engel, L. 2011. Monkeys on the Edge: Ecology 437 and Management of Long-tailed Macaques and their Interface with Humans, Cambridge 438 University Press, Cambridge. – reference: 17. Hengjan, Y., Saputra, V., Mirsageri, M., Pramono, D., Kasmono, S., Basri, C., Ando, T., Ohmori, Y., Agungpriyono, S. and Hondo, E. 2018. Nighttime behavioral study of flying foxes on the southern coast of West Java, Indonesia. J. Vet. Med. Sci. 80: 1146–1152. – reference: 7. Carlson, C. J. 2020. From PREDICT to prevention, one pandemic later. Lancet Microbe 1: e6–e7. – reference: 33. Wang, L. F. and Anderson, D. E. 2019. Viruses in bats and potential spillover to animals and humans. Curr. Opin. Virol. 34: 79–89. – reference: 35. Yoshikawa, G., Blanc-Mathieu, R., Song, C., Kayama, Y., Mochizuki, T., Murata, K., Ogata, H. and Takemura, M. 2019. Medusavirus, a novel large DNA virus discovered from hot spring water. J. Virol. 93: e02130-18. – reference: 11. Goodwin, R. E. 1979. The bats of Timor: Systematics and ecology. Bull. AMNH. 163: 2. – reference: 27. Sendow, I., Ratnawati, A., Taylor, T., Adjid, R. M., Saepulloh, M., Barr, J., Wong, F., Daniels, P. and Field, H. 2013. Nipah virus in the fruit bat Pteropus vampyrus in Sumatera, Indonesia. PLoS One 8: e69544. – ident: 6 doi: 10.1128/CMR.00017-06 – ident: 34 doi: 10.1371/journal.ppat.1001255 – ident: 9 doi: 10.1038/nrg3199 – ident: 18 doi: 10.1038/nature08695 – ident: 26 doi: 10.3201/eid1204.051181 – ident: 28 doi: 10.1098/rsbl.2009.0016 – ident: 35 doi: 10.1128/JVI.02130-18 – ident: 29 doi: 10.1111/j.1744-7348.2004.tb00323.x – ident: 3 doi: 10.1128/JVI.01234-10 – ident: 20 doi: 10.1038/s41579-019-0189-2 – ident: 21 doi: 10.1371/journal.pone.0186450 – ident: 22 doi: 10.1644/1545-1410(2000)642<0001:PV>2.0.CO;2 – ident: 2 doi: 10.1038/cddiscovery.2016.48 – ident: 4 doi: 10.1292/jvms.17-0222 – ident: 8 doi: 10.1007/s007050050168 – ident: 30 doi: 10.1007/s11262-018-1603-y – ident: 24 doi: 10.1098/rspb.2014.2124 – ident: 27 doi: 10.1371/journal.pone.0069544 – ident: 16 doi: 10.1292/jvms.16-0643 – ident: 7 doi: 10.1016/S2666-5247(20)30002-1 – ident: 33 doi: 10.1016/j.coviro.2018.12.007 – ident: 17 doi: 10.1292/jvms.17-0665 – ident: 23 doi: 10.1038/ng1699 – ident: 11 – ident: 14 doi: 10.1016/j.virusres.2015.05.006 – ident: 19 doi: 10.1128/JVI.01714-18 – ident: 13 – ident: 5 doi: 10.4161/rna.8.2.14514 – ident: 12 doi: 10.1128/MMBR.00044-17 – ident: 15 doi: 10.3201/eid0812.010317 – ident: 10 doi: 10.1006/viro.1997.8937 – ident: 32 doi: 10.1016/j.cell.2009.06.036 – ident: 1 doi: 10.1186/s12889-020-08460-8 – ident: 25 doi: 10.3201/eid1612.091790 – ident: 31 doi: 10.1016/S1097-2765(00)80161-6 |
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| Snippet | Here, we performed next-generation sequencing (NGS) on six large flying foxes (Pteropus vampyrus) collected in Indonesia. Seventy-five virus species in the... Here, we performed next-generation sequencing (NGS) on six large flying foxes ( Pteropus vampyrus ) collected in Indonesia. Seventy-five virus species in the... |
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| SubjectTerms | Deoxyribonucleic acid DNA endogenization Genomes Hepatocytes Indonesia Next-generation sequencing Nucleotide sequence plant virus Plant viruses Pteropus vampyrus virus Wildlife Science |
| Title | Viral-derived DNA invasion and individual variation in an Indonesian population of large flying fox Pteropus vampyrus |
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