EpiCollect: linking smartphones to web applications for epidemiology, ecology and community data collection
Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further analysis. The recent introduction of mobile phones that utilise the open source Android operating system, and which include (among other features) both G...
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Published in | PloS one Vol. 4; no. 9; p. e6968 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
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Public Library of Science
16.09.2009
Public Library of Science (PLoS) |
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Abstract | Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further analysis. The recent introduction of mobile phones that utilise the open source Android operating system, and which include (among other features) both GPS and Google Maps, provide new opportunities for developing mobile phone applications, which in conjunction with web applications, allow two-way communication between field workers and their project databases.
Here we describe a generic framework, consisting of mobile phone software, EpiCollect, and a web application located within www.spatialepidemiology.net. Data collected by multiple field workers can be submitted by phone, together with GPS data, to a common web database and can be displayed and analysed, along with previously collected data, using Google Maps (or Google Earth). Similarly, data from the web database can be requested and displayed on the mobile phone, again using Google Maps. Data filtering options allow the display of data submitted by the individual field workers or, for example, those data within certain values of a measured variable or a time period.
Data collection frameworks utilising mobile phones with data submission to and from central databases are widely applicable and can give a field worker similar display and analysis tools on their mobile phone that they would have if viewing the data in their laboratory via the web. We demonstrate their utility for epidemiological data collection and display, and briefly discuss their application in ecological and community data collection. Furthermore, such frameworks offer great potential for recruiting 'citizen scientists' to contribute data easily to central databases through their mobile phone. |
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AbstractList | BACKGROUNDEpidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further analysis. The recent introduction of mobile phones that utilise the open source Android operating system, and which include (among other features) both GPS and Google Maps, provide new opportunities for developing mobile phone applications, which in conjunction with web applications, allow two-way communication between field workers and their project databases. METHODOLOGYHere we describe a generic framework, consisting of mobile phone software, EpiCollect, and a web application located within www.spatialepidemiology.net. Data collected by multiple field workers can be submitted by phone, together with GPS data, to a common web database and can be displayed and analysed, along with previously collected data, using Google Maps (or Google Earth). Similarly, data from the web database can be requested and displayed on the mobile phone, again using Google Maps. Data filtering options allow the display of data submitted by the individual field workers or, for example, those data within certain values of a measured variable or a time period. CONCLUSIONSData collection frameworks utilising mobile phones with data submission to and from central databases are widely applicable and can give a field worker similar display and analysis tools on their mobile phone that they would have if viewing the data in their laboratory via the web. We demonstrate their utility for epidemiological data collection and display, and briefly discuss their application in ecological and community data collection. Furthermore, such frameworks offer great potential for recruiting 'citizen scientists' to contribute data easily to central databases through their mobile phone. Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further analysis. The recent introduction of mobile phones that utilise the open source Android operating system, and which include (among other features) both GPS and Google Maps, provide new opportunities for developing mobile phone applications, which in conjunction with web applications, allow two-way communication between field workers and their project databases. Here we describe a generic framework, consisting of mobile phone software, EpiCollect, and a web application located within www.spatialepidemiology.net. Data collected by multiple field workers can be submitted by phone, together with GPS data, to a common web database and can be displayed and analysed, along with previously collected data, using Google Maps (or Google Earth). Similarly, data from the web database can be requested and displayed on the mobile phone, again using Google Maps. Data filtering options allow the display of data submitted by the individual field workers or, for example, those data within certain values of a measured variable or a time period. Data collection frameworks utilising mobile phones with data submission to and from central databases are widely applicable and can give a field worker similar display and analysis tools on their mobile phone that they would have if viewing the data in their laboratory via the web. We demonstrate their utility for epidemiological data collection and display, and briefly discuss their application in ecological and community data collection. Furthermore, such frameworks offer great potential for recruiting 'citizen scientists' to contribute data easily to central databases through their mobile phone. Background Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further analysis. The recent introduction of mobile phones that utilise the open source Android operating system, and which include (among other features) both GPS and Google Maps, provide new opportunities for developing mobile phone applications, which in conjunction with web applications, allow two-way communication between field workers and their project databases. Methodology Here we describe a generic framework, consisting of mobile phone software, EpiCollect, and a web application located within www.spatialepidemiology.net. Data collected by multiple field workers can be submitted by phone, together with GPS data, to a common web database and can be displayed and analysed, along with previously collected data, using Google Maps (or Google Earth). Similarly, data from the web database can be requested and displayed on the mobile phone, again using Google Maps. Data filtering options allow the display of data submitted by the individual field workers or, for example, those data within certain values of a measured variable or a time period. Conclusions Data collection frameworks utilising mobile phones with data submission to and from central databases are widely applicable and can give a field worker similar display and analysis tools on their mobile phone that they would have if viewing the data in their laboratory via the web. We demonstrate their utility for epidemiological data collection and display, and briefly discuss their application in ecological and community data collection. Furthermore, such frameworks offer great potential for recruiting 'citizen scientists' to contribute data easily to central databases through their mobile phone. Background Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further analysis. The recent introduction of mobile phones that utilise the open source Android operating system, and which include (among other features) both GPS and Google Maps, provide new opportunities for developing mobile phone applications, which in conjunction with web applications, allow two-way communication between field workers and their project databases. Methodology Here we describe a generic framework, consisting of mobile phone software, EpiCollect, and a web application located within www.spatialepidemiology.net. Data collected by multiple field workers can be submitted by phone, together with GPS data, to a common web database and can be displayed and analysed, along with previously collected data, using Google Maps (or Google Earth). Similarly, data from the web database can be requested and displayed on the mobile phone, again using Google Maps. Data filtering options allow the display of data submitted by the individual field workers or, for example, those data within certain values of a measured variable or a time period. Conclusions Data collection frameworks utilising mobile phones with data submission to and from central databases are widely applicable and can give a field worker similar display and analysis tools on their mobile phone that they would have if viewing the data in their laboratory via the web. We demonstrate their utility for epidemiological data collection and display, and briefly discuss their application in ecological and community data collection. Furthermore, such frameworks offer great potential for recruiting ‘citizen scientists’ to contribute data easily to central databases through their mobile phone. Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further analysis. The recent introduction of mobile phones that utilise the open source Android operating system, and which include (among other features) both GPS and Google Maps, provide new opportunities for developing mobile phone applications, which in conjunction with web applications, allow two-way communication between field workers and their project databases. Here we describe a generic framework, consisting of mobile phone software, EpiCollect, and a web application located within www.spatialepidemiology.net. Data collected by multiple field workers can be submitted by phone, together with GPS data, to a common web database and can be displayed and analysed, along with previously collected data, using Google Maps (or Google Earth). Similarly, data from the web database can be requested and displayed on the mobile phone, again using Google Maps. Data filtering options allow the display of data submitted by the individual field workers or, for example, those data within certain values of a measured variable or a time period. Data collection frameworks utilising mobile phones with data submission to and from central databases are widely applicable and can give a field worker similar display and analysis tools on their mobile phone that they would have if viewing the data in their laboratory via the web. We demonstrate their utility for epidemiological data collection and display, and briefly discuss their application in ecological and community data collection. Furthermore, such frameworks offer great potential for recruiting 'citizen scientists' to contribute data easily to central databases through their mobile phone. |
Audience | Academic |
Author | Aanensen, David M Feil, Edward J Spratt, Brian G al-Own, Fada'a Huntley, Derek M |
AuthorAffiliation | 3 Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom 2 Centre for Bioinformatics, Imperial College London, London, United Kingdom 1 Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom University of Oxford, United Kingdom |
AuthorAffiliation_xml | – name: University of Oxford, United Kingdom – name: 1 Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom – name: 3 Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom – name: 2 Centre for Bioinformatics, Imperial College London, London, United Kingdom |
Author_xml | – sequence: 1 givenname: David M surname: Aanensen fullname: Aanensen, David M email: d.aanensen@imperial.ac.uk organization: Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom. d.aanensen@imperial.ac.uk – sequence: 2 givenname: Derek M surname: Huntley fullname: Huntley, Derek M – sequence: 3 givenname: Edward J surname: Feil fullname: Feil, Edward J – sequence: 4 givenname: Fada'a surname: al-Own fullname: al-Own, Fada'a – sequence: 5 givenname: Brian G surname: Spratt fullname: Spratt, Brian G |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/19756138$$D View this record in MEDLINE/PubMed |
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Cites_doi | 10.1038/458959a 10.1038/439006a 10.1016/S1473-3099(09)70118-5 10.1093/nar/gki415 10.1073/pnas.95.6.3140 |
ContentType | Journal Article |
Copyright | COPYRIGHT 2009 Public Library of Science 2009 Aanensen et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. Aanensen et al. 2009 |
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Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Conceived and designed the experiments: DMA DMH BGS. Wrote the paper: DMA BGS. Software and web interface development: DMA DMH. Field testing of software: EJF FaO. |
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References_xml | – volume: 458(7241) start-page: 959 year: 2009 ident: ref3 article-title: Personal technology: Phoning in data. publication-title: Nature doi: 10.1038/458959a contributor: fullname: R Kwok – volume: 439(7072) start-page: 6 year: 2006 ident: ref5 article-title: Mashups mix data into global service. publication-title: Nature doi: 10.1038/439006a contributor: fullname: D Butler – volume: 9(5) start-page: 274 year: 2009 ident: ref4 article-title: Mobile phones connecting efforts to tackle infectious disease. publication-title: Lancet Infect Dis doi: 10.1016/S1473-3099(09)70118-5 contributor: fullname: K Morris – volume: 33 start-page: W728 year: 2005 ident: ref2 article-title: The multilocus sequence typing network:mlst.net publication-title: Nuc Acids Res doi: 10.1093/nar/gki415 contributor: fullname: DM Aanensen – volume: 95 start-page: 3140 year: 1998 ident: ref1 article-title: Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms. publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.95.6.3140 contributor: fullname: CJ Maiden |
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Snippet | Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further analysis.... Background Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further... BACKGROUNDEpidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further... Background Epidemiologists and ecologists often collect data in the field and, on returning to their laboratory, enter their data into a database for further... |
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SubjectTerms | Applications programs Cell Phone Cell phones Cellular telephones Collection Communities Computational Biology Computational Biology - instrumentation Computational Biology - methods Computers Data bases Data collection Data Collection - instrumentation Data Collection - methods Data processing Database Management Systems Digital map services Digital mapping Ecology Ecology - instrumentation Epidemiology Epidemiology - instrumentation Filtration Freeware Geography Humans Infectious Diseases Information Dissemination Internet Internet software Methyltestosterone Mobile operating systems Operating systems Operating systems (Software) Programming Languages Smart phones Smartphones Software Technology application Web applications Wireless telephone software Workers |
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Title | EpiCollect: linking smartphones to web applications for epidemiology, ecology and community data collection |
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