Microsatellite markers: what they mean and why they are so useful
Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in plant genetics studies, using both low and high throughput genotyping approaches. Motivated by the importance of these sequences over the last decades this review aims to address some theoretical aspects of SSRs, including...
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| Published in | Genetics and molecular biology Vol. 39; no. 3; pp. 312 - 328 |
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| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
Brazil
Sociedade Brasileira de Genética
01.07.2016
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| Subjects | |
| Online Access | Get full text |
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| Abstract | Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in plant genetics studies, using both low and high throughput genotyping approaches. Motivated by the importance of these sequences over the last decades this review aims to address some theoretical aspects of SSRs, including definition, characterization and biological function. The methodologies for the development of SSR loci, genotyping and their applications as molecular markers are also reviewed. Finally, two data surveys are presented. The first was conducted using the main database of Web of Science, prospecting for articles published over the period from 2010 to 2015, resulting in approximately 930 records. The second survey was focused on papers that aimed at SSR marker development, published in the American Journal of Botany's Primer Notes and Protocols in Plant Sciences (over 2013 up to 2015), resulting in a total of 87 publications. This scenario confirms the current relevance of SSRs and indicates their continuous utilization in plant science. |
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| AbstractList | Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in plant genetics studies, using both low and high throughput genotyping approaches. Motivated by the importance of these sequences over the last decades this review aims to address some theoretical aspects of SSRs, including definition, characterization and biological function. The methodologies for the development of SSR loci, genotyping and their applications as molecular markers are also reviewed. Finally, two data surveys are presented. The first was conducted using the main database of Web of Science, prospecting for articles published over the period from 2010 to 2015, resulting in approximately 930 records. The second survey was focused on papers that aimed at SSR marker development, published in the American Journal of Botany's Primer Notes and Protocols in Plant Sciences (over 2013 up to 2015), resulting in a total of 87 publications. This scenario confirms the current relevance of SSRs and indicates their continuous utilization in plant science. Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in plant genetics studies, using both low and high throughput genotyping approaches. Motivated by the importance of these sequences over the last decades this review aims to address some theoretical aspects of SSRs, including definition, characterization and biological function. The methodologies for the development of SSR loci, genotyping and their applications as molecular markers are also reviewed. Finally, two data surveys are presented. The first was conducted using the main database of Web of Science, prospecting for articles published over the period from 2010 to 2015, resulting in approximately 930 records. The second survey was focused on papers that aimed at SSR marker development, published in the American Journal of Botany's Primer Notes and Protocols in Plant Sciences (over 2013 up to 2015), resulting in a total of 87 publications. This scenario confirms the current relevance of SSRs and indicates their continuous utilization in plant science. Abstract Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in plant genetics studies, using both low and high throughput genotyping approaches. Motivated by the importance of these sequences over the last decades this review aims to address some theoretical aspects of SSRs, including definition, characterization and biological function. The methodologies for the development of SSR loci, genotyping and their applications as molecular markers are also reviewed. Finally, two data surveys are presented. The first was conducted using the main database of Web of Science, prospecting for articles published over the period from 2010 to 2015, resulting in approximately 930 records. The second survey was focused on papers that aimed at SSR marker development, published in the American Journal of Botany's Primer Notes and Protocols in Plant Sciences (over 2013 up to 2015), resulting in a total of 87 publications. This scenario confirms the current relevance of SSRs and indicates their continuous utilization in plant science. |
| Author | Munhoz, Carla de Freitas Diniz, Augusto Lima Santini, Luciane Vieira, Maria Lucia Carneiro |
| AuthorAffiliation | Universidade de São Paulo |
| AuthorAffiliation_xml | – name: Universidade de São Paulo |
| Author_xml | – sequence: 1 givenname: Maria Lucia Carneiro surname: Vieira fullname: Vieira, Maria Lucia Carneiro organization: Departamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ), Universidade de São Paulo (USP), Piracicaba, SP, Brazil – sequence: 2 givenname: Luciane surname: Santini fullname: Santini, Luciane organization: Departamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ), Universidade de São Paulo (USP), Piracicaba, SP, Brazil – sequence: 3 givenname: Augusto Lima surname: Diniz fullname: Diniz, Augusto Lima organization: Departamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ), Universidade de São Paulo (USP), Piracicaba, SP, Brazil – sequence: 4 givenname: Carla de Freitas surname: Munhoz fullname: Munhoz, Carla de Freitas organization: Departamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ), Universidade de São Paulo (USP), Piracicaba, SP, Brazil |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/27561112$$D View this record in MEDLINE/PubMed |
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| Keywords | genomic distribution practical utility SSR biological function genotyping approaches molecular marker |
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| Snippet | Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in plant genetics studies, using both low and high throughput genotyping approaches.... Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in plant genetics studies, using both low and high throughput genotyping approaches.... Abstract Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in plant genetics studies, using both low and high throughput genotyping... |
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| StartPage | 312 |
| SubjectTerms | BIOCHEMISTRY & MOLECULAR BIOLOGY GENETICS & HEREDITY genomic distribution genotyping approaches molecular marker practical utility Special Series of - 60 Years of The Brazilian Society of Genetics SSR biological function |
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| Title | Microsatellite markers: what they mean and why they are so useful |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/27561112 https://search.proquest.com/docview/1815970721 https://search.proquest.com/docview/1837323008 https://pubmed.ncbi.nlm.nih.gov/PMC5004837 http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300312&lng=en&tlng=en https://doaj.org/article/8ca134684f4c42c3b088cb6452999484 |
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