Vitamin D metabolites and the gut microbiome in older men

• Published in: Nature communications Vol. 11; no. 1; pp. 5997 - 10
• Main Authors: Thomas, Robert L., Jiang, Lingjing, Adams, John S., Xu, Zhenjiang Zech, Shen, Jian, Janssen, Stefan, Ackermann, Gail, Vanderschueren, Dirk, Pauwels, Steven, Knight, Rob, Orwoll, Eric S., Kado, Deborah M.
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 26.11.2020; Nature Publishing Group; Nature Portfolio
• Subjects: 101/58; 45; 45/23; 631/326/2565/2134; 692/163/2743; Aged; Aged, 80 and over; Biomedical materials; Butyrates - metabolism; Calcifediol - analysis; Calcifediol - metabolism; Calciferol; Calcitriol - analysis; Calcitriol - metabolism; Catabolism; Correlation analysis; Cross-Sectional Studies; Digestive system; DNA, Bacterial - isolation & purification; Feces - chemistry; Feces - microbiology; Fractures; Gastrointestinal Microbiome - physiology; Gastrointestinal system; Gastrointestinal tract; Gene expression; Gene sequencing; Gut microbiota; Humanities and Social Sciences; Humans; Independent Living; Intestinal microflora; Intestinal Mucosa - metabolism; Intestinal Mucosa - microbiology; Male; Metabolites; Microbiomes; Microbiota; Microorganisms; multidisciplinary; Osteoporosis; Phylogeny; RNA, Ribosomal, 16S - genetics; rRNA; Science; Science (multidisciplinary); Variance analysis; Vitamin D
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-020-19793-8

The vitamin D receptor is highly expressed in the gastrointestinal tract where it transacts gene expression. With current limited understanding of the interactions between the gut microbiome and vitamin D, we conduct a cross-sectional analysis of 567 older men quantifying serum vitamin D metabolites using LC-MSMS and defining stool sub-Operational Taxonomic Units from16S ribosomal RNA gene sequencing data. Faith’s Phylogenetic Diversity and non-redundant covariate analyses reveal that the serum 1,25(OH) 2 D level explains 5% of variance in α-diversity. In β-diversity analyses using unweighted UniFrac, 1,25(OH) 2 D is the strongest factor assessed, explaining 2% of variance. Random forest analyses identify 12 taxa, 11 in the phylum Firmicutes, eight of which are positively associated with either 1,25(OH) 2 D and/or the hormone-to-prohormone [1,25(OH) 2 D/25(OH)D] “activation ratio.” Men with higher levels of 1,25(OH) 2 D and higher activation ratios, but not 25(OH)D itself, are more likely to possess butyrate producing bacteria that are associated with better gut microbial health. Here, the authors investigate associations of vitamin D metabolites with gut microbiome in a cross-sectional analysis of 567 elderly men enrolled in the Osteoporotic Fractures in Men (MrOS) Study and find larger alpha-diversity correlates with high 1,25(OH)2D and high 24,25(OH)2D and higher ratios of activation and catabolism.