Comparative analysis of the complete genome sequence of the plant growth–promoting bacterium Bacillus amyloliquefaciens FZB42

Bacillus amyloliquefaciens FZB42 is a Gram-positive, plant-associated bacterium, which stimulates plant growth and produces secondary metabolites that suppress soil-borne plant pathogens. Its 3,918-kb genome, containing an estimated 3,693 protein-coding sequences, lacks extended phage insertions, wh...

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Published in	Nature biotechnology Vol. 25; no. 9; pp. 1007 - 1014
Main Authors	Chen, Xiao Hua, Koumoutsi, Alexandra, Scholz, Romy, Eisenreich, Andreas, Schneider, Kathrin, Heinemeyer, Isabelle, Morgenstern, Burkhard, Voss, Björn, Hess, Wolfgang R, Reva, Oleg, Junge, Helmut, Voigt, Birgit, Jungblut, Peter R, Vater, Joachim, Süssmuth, Roderich, Liesegang, Heiko, Strittmatter, Axel, Gottschalk, Gerhard, Borriss, Rainer
Format	Journal Article
Language	English
Published	New York Nature Publishing Group US 01.09.2007 Nature Publishing Group
Subjects	Agriculture Antibiotics Antimicrobial Cationic Peptides - genetics Bacillus - classification Bacillus - genetics Bacillus - metabolism Bacillus amyloliquefaciens Bacillus subtilis Bacteria Biochemistry Bioinformatics Biological and medical sciences Biomedical and Life Sciences Biomedical Engineering/Biotechnology Biomedicine Biotechnology Botany Chemical synthesis DNA, Bacterial Fundamental and applied biological sciences. Psychology Genes, Bacterial Genome, Bacterial - genetics Genomics Host-Parasite Interactions Life Sciences Metabolites Molecular Sequence Data Multigene Family Pathogens Pest Control, Biological Plant Development Plant growth Plants - microbiology Secondary metabolites Sequence Analysis, DNA Siderophores - genetics Bacillales Gene Bacteria Bacillus amyloliquefaciens Plant growth promoting rhizobacteria Bacillaceae Genome Comparative study
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Abstract	Bacillus amyloliquefaciens FZB42 is a Gram-positive, plant-associated bacterium, which stimulates plant growth and produces secondary metabolites that suppress soil-borne plant pathogens. Its 3,918-kb genome, containing an estimated 3,693 protein-coding sequences, lacks extended phage insertions, which occur ubiquitously in the closely related Bacillus subtilis 168 genome. The B. amyloliquefaciens FZB42 genome reveals an unexpected potential to produce secondary metabolites, including the polyketides bacillaene and difficidin. More than 8.5% of the genome is devoted to synthesizing antibiotics and siderophores by pathways not involving ribosomes. Besides five gene clusters, known from B. subtilis to mediate nonribosomal synthesis of secondary metabolites, we identified four giant gene clusters absent in B. subtilis 168. The pks2 gene cluster encodes the components to synthesize the macrolactin core skeleton.
AbstractList	Bacillus amyloliquefaciens FZB42 is a Gram-positive, plant-associated bacterium, which stimulates plant growth and produces secondary metabolites that suppress soil-borne plant pathogens. Its 3,918-kb genome, containing an estimated 3,693 protein-coding sequences, lacks extended phage insertions, which occur ubiquitously in the closely related Bacillus subtilis 168 genome. The B. amyloliquefaciens FZB42 genome reveals an unexpected potential to produce secondary metabolites, including the polyketides bacillaene and difficidin. More than 8.5% of the genome is devoted to synthesizing antibiotics and siderophores by pathways not involving ribosomes. Besides five gene clusters, known from B. subtilis to mediate nonribosomal synthesis of secondary metabolites, we identified four giant gene clusters absent in B. subtilis 168. The pks2 gene cluster encodes the components to synthesize the macrolactin core skeleton. Bacillus amyloliquefaciens FZB42 is a Gram-positive, plant-associated bacterium, which stimulates plant growth and produces secondary metabolites that suppress soil-borne plant pathogens. Its 3,918-kb genome, containing an estimated 3,693 protein-coding sequences, lacks extended phage insertions, which occur ubiquitously in the closely related Bacillus subtilis 168 genome. The B. amyloliquefaciens FZB42 genome reveals an unexpected potential to produce secondary metabolites, including the polyketides bacillaene and difficidin. More than 8.5% of the genome is devoted to synthesizing antibiotics and siderophores by pathways not involving ribosomes. Besides five gene clusters, known from B. subtilis to mediate nonribosomal synthesis of secondary metabolites, we identified four giant gene clusters absent in B. subtilis 168. The pks2 gene cluster encodes the components to synthesize the macrolactin core skeleton.Bacillus amyloliquefaciens FZB42 is a Gram-positive, plant-associated bacterium, which stimulates plant growth and produces secondary metabolites that suppress soil-borne plant pathogens. Its 3,918-kb genome, containing an estimated 3,693 protein-coding sequences, lacks extended phage insertions, which occur ubiquitously in the closely related Bacillus subtilis 168 genome. The B. amyloliquefaciens FZB42 genome reveals an unexpected potential to produce secondary metabolites, including the polyketides bacillaene and difficidin. More than 8.5% of the genome is devoted to synthesizing antibiotics and siderophores by pathways not involving ribosomes. Besides five gene clusters, known from B. subtilis to mediate nonribosomal synthesis of secondary metabolites, we identified four giant gene clusters absent in B. subtilis 168. The pks2 gene cluster encodes the components to synthesize the macrolactin core skeleton. Bacillus amyloliquefaciens FZB42 is a Gram-positive, plant-associated bacterium, which stimulates plant growth and produces secondary metabolites that suppress soil-borne plant pathogens. Its 3,918-kb genome, containing an estimated 3,693 protein-coding sequences, lacks extended phage insertions, which occur ubiquitously in the closely related Bacillus subtilis 168 genome. The B. amyloliquefaciens FZB42 genome reveals an unexpected potential to produce secondary metabolites, including the polyketides bacillaene and difficidin. More than 8.5% of the genome is devoted to synthesizing antibiotics and siderophores by pathways not involving ribosomes. Besides five gene clusters, known from B. subtilis to mediate nonribosomal synthesis of secondary metabolites, we identified four giant gene clusters absent in B. subtilis 168. The pks2 gene cluster encodes the components to synthesize the macrolactin core skeleton.
Audience	Academic
Author	Scholz, Romy Vater, Joachim Eisenreich, Andreas Chen, Xiao Hua Liesegang, Heiko Heinemeyer, Isabelle Koumoutsi, Alexandra Voigt, Birgit Voss, Björn Junge, Helmut Jungblut, Peter R Schneider, Kathrin Süssmuth, Roderich Morgenstern, Burkhard Gottschalk, Gerhard Strittmatter, Axel Hess, Wolfgang R Reva, Oleg Borriss, Rainer
Author_xml	– sequence: 1 givenname: Xiao Hua surname: Chen fullname: Chen, Xiao Hua organization: Bakteriengenetik, Institut für Biologie, Humboldt Universität, Chausseestr. 117 – sequence: 2 givenname: Alexandra surname: Koumoutsi fullname: Koumoutsi, Alexandra organization: Bakteriengenetik, Institut für Biologie, Humboldt Universität, Chausseestr. 117 – sequence: 3 givenname: Romy surname: Scholz fullname: Scholz, Romy organization: Bakteriengenetik, Institut für Biologie, Humboldt Universität, Chausseestr. 117 – sequence: 4 givenname: Andreas surname: Eisenreich fullname: Eisenreich, Andreas organization: Bakteriengenetik, Institut für Biologie, Humboldt Universität, Chausseestr. 117 – sequence: 5 givenname: Kathrin surname: Schneider fullname: Schneider, Kathrin organization: Institut für Chemie/Biologische Chemie, Technische Universität Berlin, Franklinstr. 29 – sequence: 6 givenname: Isabelle surname: Heinemeyer fullname: Heinemeyer, Isabelle organization: Bioinformatik, Institut für Mikrobiologie und Genetik, Georg-August Universität, Goldschmidtstr. 1 – sequence: 7 givenname: Burkhard surname: Morgenstern fullname: Morgenstern, Burkhard organization: Bioinformatik, Institut für Mikrobiologie und Genetik, Georg-August Universität, Goldschmidtstr. 1 – sequence: 8 givenname: Björn surname: Voss fullname: Voss, Björn organization: Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Schänzlestr. 1 – sequence: 9 givenname: Wolfgang R surname: Hess fullname: Hess, Wolfgang R organization: Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Schänzlestr. 1 – sequence: 10 givenname: Oleg surname: Reva fullname: Reva, Oleg organization: Biochemistry Department, Bioinformatics and Computational Biology Unit, University of Pretoria – sequence: 11 givenname: Helmut surname: Junge fullname: Junge, Helmut organization: Abitep GmbH, Glienicker Weg 185 – sequence: 12 givenname: Birgit surname: Voigt fullname: Voigt, Birgit organization: Institut für Mikrobiologie und Molekularbiologie, Ernst-Moritz-Arndt Universität, Jahnstr. 15 – sequence: 13 givenname: Peter R surname: Jungblut fullname: Jungblut, Peter R organization: MPI Infektionsbiologie, Charitéplatz 1 – sequence: 14 givenname: Joachim surname: Vater fullname: Vater, Joachim organization: Institut für Chemie/Biologische Chemie, Technische Universität Berlin, Franklinstr. 29 – sequence: 15 givenname: Roderich surname: Süssmuth fullname: Süssmuth, Roderich organization: Institut für Chemie/Biologische Chemie, Technische Universität Berlin, Franklinstr. 29 – sequence: 16 givenname: Heiko surname: Liesegang fullname: Liesegang, Heiko organization: Institut für Mikrobiologie und Genetik, Laboratorium für Genomanalyse, Georg-August Universität, Grisebachstr. 8 – sequence: 17 givenname: Axel surname: Strittmatter fullname: Strittmatter, Axel organization: Institut für Mikrobiologie und Genetik, Laboratorium für Genomanalyse, Georg-August Universität, Grisebachstr. 8 – sequence: 18 givenname: Gerhard surname: Gottschalk fullname: Gottschalk, Gerhard organization: Institut für Mikrobiologie und Genetik, Laboratorium für Genomanalyse, Georg-August Universität, Grisebachstr. 8 – sequence: 19 givenname: Rainer surname: Borriss fullname: Borriss, Rainer email: rainer.borriss@rz.hu-berlin.de organization: Bakteriengenetik, Institut für Biologie, Humboldt Universität, Chausseestr. 117
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ContentType	Journal Article
Copyright	The Author(s) 2007 2009 INIST-CNRS COPYRIGHT 2007 Nature Publishing Group Copyright Nature Publishing Group Sep 2007
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Keywords	Bacillales Gene Bacteria Bacillus amyloliquefaciens Plant growth promoting rhizobacteria Bacillaceae Genome Comparative study
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Snippet	Bacillus amyloliquefaciens FZB42 is a Gram-positive, plant-associated bacterium, which stimulates plant growth and produces secondary metabolites that suppress... Bacillus amyloliquefaciens FZB42 is a Gram-positive, plant-associated bacterium, which stimulates plant growth and produces secondary metabolites that suppress...
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SubjectTerms	Agriculture Antibiotics Antimicrobial Cationic Peptides - genetics Bacillus - classification Bacillus - genetics Bacillus - metabolism Bacillus amyloliquefaciens Bacillus subtilis Bacteria Biochemistry Bioinformatics Biological and medical sciences Biomedical and Life Sciences Biomedical Engineering/Biotechnology Biomedicine Biotechnology Botany Chemical synthesis DNA, Bacterial Fundamental and applied biological sciences. Psychology Genes, Bacterial Genome, Bacterial - genetics Genomics Host-Parasite Interactions Life Sciences Metabolites Molecular Sequence Data Multigene Family Pathogens Pest Control, Biological Plant Development Plant growth Plants - microbiology Secondary metabolites Sequence Analysis, DNA Siderophores - genetics
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Title	Comparative analysis of the complete genome sequence of the plant growth–promoting bacterium Bacillus amyloliquefaciens FZB42
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