Population structure in Quercus suber L. revealed by nuclear microsatellite markers

Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry conditions due to environmental changes. Understanding the population structure and demographics of Q. suber is essential in o...

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Published inPeerJ (San Francisco, CA) Vol. 10; p. e13565
Main Authors Sousa, Filipe, Costa, Joana, Ribeiro, Carla, Varandas, Marta, Pina-Martins, Francisco, Simões, Fernanda, Matos, José, Glushkova, Maria, Miguel, Célia, Veloso, Maria Manuela, Oliveira, Margarida, Pinto Ricardo, Cândido, Batista, Dora, Paulo, Octávio S.
Format Journal Article
LanguageEnglish
Published United States PeerJ. Ltd 16.06.2022
PeerJ, Inc
PeerJ Inc
Subjects
Adaptation
Analysis
Biodiversity
Biogeography
Biological diversity
Cell Nucleus - genetics
Chloroplasts
Conservation
Cork oak
Drought
Environmental changes
Genetic analysis
Genetic diversity
Genetic markers
Genetics
Glacial refugia
Indigenous species
Microsatellite Repeats - genetics
Microsatellites
Plant Science
Polymorphism
Population
Population Biology
Population genetics
Population structure
Quercus - genetics
Quercus suber
Rain
Refugia
Trees - genetics
West Mediterranean
Italy
Morocco
United States > US
Tunisia
Portugal
Cork oak
Population genetics
West Mediterranean
Conservation
Glacial refugia
Online AccessGet full text
ISSN2167-8359
2167-8359
DOI10.7717/peerj.13565

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Abstract Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry conditions due to environmental changes. Understanding the population structure and demographics of Q. suber is essential in order to anticipate whether populations at greater risk and the species as a whole have the genetic background and reproductive dynamics to enable rapid adaptation. The genetic diversity of Q. suber has been subject to different studies using both chloroplast and nuclear data, but population structure patterns remain unclear. Here, we perform genetic analyses on Q. suber using 13 nuclear microsatellite markers, and analysed 17 distinct locations across the entire range of the species. Structure analyses revealed that Q. suber may contain three major genetic clusters that likely result from isolation in refugia combined with posterior admixture and putative introgression from other Quercus species. Our results show a more complex structure scenario than previously inferred for Q. suber using nuclear markers and suggest that different southern populations contain high levels of genetic variation that may contribute to the resilience of Q. suber in a context of environmental change and adaptive pressure.
AbstractList L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry conditions due to environmental changes. Understanding the population structure and demographics of is essential in order to anticipate whether populations at greater risk and the species as a whole have the genetic background and reproductive dynamics to enable rapid adaptation. The genetic diversity of has been subject to different studies using both chloroplast and nuclear data, but population structure patterns remain unclear. Here, we perform genetic analyses on using 13 nuclear microsatellite markers, and analysed 17 distinct locations across the entire range of the species. Structure analyses revealed that may contain three major genetic clusters that likely result from isolation in refugia combined with posterior admixture and putative introgression from other species. Our results show a more complex structure scenario than previously inferred for using nuclear markers and suggest that different southern populations contain high levels of genetic variation that may contribute to the resilience of in a context of environmental change and adaptive pressure.
Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry conditions due to environmental changes. Understanding the population structure and demographics of Q. suber is essential in order to anticipate whether populations at greater risk and the species as a whole have the genetic background and reproductive dynamics to enable rapid adaptation. The genetic diversity of Q. suber has been subject to different studies using both chloroplast and nuclear data, but population structure patterns remain unclear. Here, we perform genetic analyses on Q. suber using 13 nuclear microsatellite markers, and analysed 17 distinct locations across the entire range of the species. Structure analyses revealed that Q. suber may contain three major genetic clusters that likely result from isolation in refugia combined with posterior admixture and putative introgression from other Quercus species. Our results show a more complex structure scenario than previously inferred for Q. suber using nuclear markers and suggest that different southern populations contain high levels of genetic variation that may contribute to the resilience of Q. suber in a context of environmental change and adaptive pressure.
Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry conditions due to environmental changes. Understanding the population structure and demographics of Q. suber is essential in order to anticipate whether populations at greater risk and the species as a whole have the genetic background and reproductive dynamics to enable rapid adaptation. The genetic diversity of Q. suber has been subject to different studies using both chloroplast and nuclear data, but population structure patterns remain unclear. Here, we perform genetic analyses on Q. suber using 13 nuclear microsatellite markers, and analysed 17 distinct locations across the entire range of the species. Structure analyses revealed that Q. suber may contain three major genetic clusters that likely result from isolation in refugia combined with posterior admixture and putative introgression from other Quercus species. Our results show a more complex structure scenario than previously inferred for Q. suber using nuclear markers and suggest that different southern populations contain high levels of genetic variation that may contribute to the resilience of Q. suber in a context of environmental change and adaptive pressure.Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry conditions due to environmental changes. Understanding the population structure and demographics of Q. suber is essential in order to anticipate whether populations at greater risk and the species as a whole have the genetic background and reproductive dynamics to enable rapid adaptation. The genetic diversity of Q. suber has been subject to different studies using both chloroplast and nuclear data, but population structure patterns remain unclear. Here, we perform genetic analyses on Q. suber using 13 nuclear microsatellite markers, and analysed 17 distinct locations across the entire range of the species. Structure analyses revealed that Q. suber may contain three major genetic clusters that likely result from isolation in refugia combined with posterior admixture and putative introgression from other Quercus species. Our results show a more complex structure scenario than previously inferred for Q. suber using nuclear markers and suggest that different southern populations contain high levels of genetic variation that may contribute to the resilience of Q. suber in a context of environmental change and adaptive pressure.
Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry conditions due to environmental changes. Understanding the population structure and demographics of Q. suber is essential in order to anticipate whether populations at greater risk and the species as a whole have the genetic background and reproductive dynamics to enable rapid adaptation. The genetic diversity of Q. suber has been subject to different studies using both chloroplast and nuclear data, but population structure patterns remain unclear. Here, we perform genetic analyses on Q. suber using 13 nuclear microsatellite markers, and analysed 17 distinct locations across the entire range of the species. Structure analyses revealed that Q. suber may contain three major genetic clusters that likely result from isolation in refugia combined with posterior admixture and putative introgression from other Quercus species. Our results show a more complex structure scenario than previously inferred for Q. suber using nuclear markers and suggest that different southern populations contain high levels of genetic variation that may contribute to the resilience of Q. suber in a context of environmental change and adaptive pressure.
ArticleNumber e13565
Audience Academic
Author Paulo, Octávio S.
Ribeiro, Carla
Glushkova, Maria
Oliveira, Margarida
Batista, Dora
Costa, Joana
Sousa, Filipe
Simões, Fernanda
Pina-Martins, Francisco
Pinto Ricardo, Cândido
Matos, José
Veloso, Maria Manuela
Miguel, Célia
Varandas, Marta
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  organization: Faculdade de Ciências, Universidade de Lisboa, cE3c—Centre for Ecology, Evolution and Environmental Changes, Lisboa, Portugal
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  givenname: Joana
  surname: Costa
  fullname: Costa, Joana
  organization: Faculdade de Ciências, Universidade de Lisboa, cE3c—Centre for Ecology, Evolution and Environmental Changes, Lisboa, Portugal, RAIZ, Herdade de Espirra, Pegões, Portugal
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  organization: Faculdade de Ciências, Universidade de Lisboa, cE3c—Centre for Ecology, Evolution and Environmental Changes, Lisboa, Portugal
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Keywords Cork oak
Population genetics
West Mediterranean
Conservation
Glacial refugia
Language English
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2022 Sousa et al.
This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
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Snippet Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures...
L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures and severe dry...
Quercus suber L. is a sclerophyllous tree species native to the western Mediterranean, a region that is considered highly vulnerable to increased temperatures...
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StartPage e13565
SubjectTerms Adaptation
Analysis
Biodiversity
Biogeography
Biological diversity
Cell Nucleus - genetics
Chloroplasts
Conservation
Cork oak
Drought
Environmental changes
Genetic analysis
Genetic diversity
Genetic markers
Genetics
Glacial refugia
Indigenous species
Microsatellite Repeats - genetics
Microsatellites
Plant Science
Polymorphism
Population
Population Biology
Population genetics
Population structure
Quercus - genetics
Quercus suber
Rain
Refugia
Trees - genetics
West Mediterranean
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Title Population structure in Quercus suber L. revealed by nuclear microsatellite markers
URI https://www.ncbi.nlm.nih.gov/pubmed/35729909
https://www.proquest.com/docview/2677203454
https://www.proquest.com/docview/2679700951
https://pubmed.ncbi.nlm.nih.gov/PMC9206845
https://doaj.org/article/51a3a933e7294810a8957497b3e52c7c
Volume 10
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