Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation - Commichaux, Seth; Rand, Hugh; Javkar, Kiran; Molloy, Erin K.; Pettengill, James B.; Pightling, Arthur; Hoffmann, Maria; Pop, Mihai; Jayeola, Victor; Foley, Steven; Luo, Yan (BMC genomics, 2023)
Keywords: Analysis; Antimicrobial agents; Clinical isolates; Contamination; Control; Disease Outbreaks; Distribution; DNA sequencing; Drug resistance; Environmental monitoring; Epidemics; Epidemiology; Farms; Food contamination & poisoning; Foodborne diseases; Gene sequencing; Genes; Genetic aspects; Genetic engineering; Genomes; Genomics; Horizontal transfer; Hypotheses; Identification and classification; Mobilome; Molecular epidemiology; Molecular evolution; Nucleotide sequencing; Nucleotides; Onions; Onions - genetics; Outbreaks; Pangenome; Phylogeny; Plasmids; Plasmids - genetics; Polymorphism; Prevention; Resampling; Risk factors; Salmonella; Salmonella enterica; Salmonella enterica Newport; Salmonella food poisoning; Serogroup; Single-nucleotide polymorphism; Source tracking; Whole genome sequencing; United States; Mexico; California; Bakersfield California; New Mexico; United States--US; Plasmid; Salmonella enterica; Source tracking; Mobilome; Molecular epidemiology; Salmonella enterica Newport; Pangenome