CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities - Kondratenko, Yulia; Korobeynikov, Anton; Lapidus, Alla (BMC bioinformatics, 2020)
Keywords: 16S metagenomics; Analysis; Annotations; Benchmarks; Clustering; Data analysis; Databases, Genetic; Datasets; Error correction & detection; High-Throughput Nucleotide Sequencing; Humans; Information management; Metagenomics; Microbiomes; Microbiota - genetics; Microorganisms; Molecular Sequence Annotation; Operational taxonomic units; Pipeline; Pipelines; Quality; Retrieval; RNA, Ribosomal, 16S - genetics; Software; Taxonomy; Utilities; Workflow; Workflow software; 16S metagenomics; Operational taxonomic units; Pipeline