The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

The Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of fruits and vegetables. It exhibits a unique ability to invade and adapt to ecological niches throughout tropical and subtropical regions of the world,...

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Published inGenome Biology Vol. 17; no. 1; p. 192
Main Authors Papanicolaou, Alexie, Schetelig, Marc F., Arensburger, Peter, Atkinson, Peter W., Benoit, Joshua B., Bourtzis, Kostas, Castañera, Pedro, Cavanaugh, John P., Chao, Hsu, Childers, Christopher, Curril, Ingrid, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dolan, Amanda, Dugan, Shannon, Friedrich, Markus, Gasperi, Giuliano, Geib, Scott, Georgakilas, Georgios, Gibbs, Richard A., Giers, Sarah D., Gomulski, Ludvik M., González-Guzmán, Miguel, Guillem-Amat, Ana, Han, Yi, Hatzigeorgiou, Artemis G., Hernández-Crespo, Pedro, Hughes, Daniel S. T., Jones, Jeffery W., Karagkouni, Dimitra, Koskinioti, Panagiota, Lee, Sandra L., Malacrida, Anna R., Manni, Mosè, Mathiopoulos, Kostas, Meccariello, Angela, Murali, Shwetha C., Murphy, Terence D., Muzny, Donna M., Oberhofer, Georg, Ortego, Félix, Paraskevopoulou, Maria D., Poelchau, Monica, Qu, Jiaxin, Reczko, Martin, Robertson, Hugh M., Rosendale, Andrew J., Rosselot, Andrew E., Saccone, Giuseppe, Salvemini, Marco, Savini, Grazia, Schreiner, Patrick, Scolari, Francesca, Siciliano, Paolo, Sim, Sheina B., Tsiamis, George, Ureña, Enric, Vlachos, Ioannis S., Werren, John H., Wimmer, Ernst A., Worley, Kim C., Zacharopoulou, Antigone, Richards, Stephen, Handler, Alfred M.
Format Journal Article
LanguageEnglish
Published England BioMed Central 22.09.2016
Subjects
Animals
Animals, Genetically Modified - genetics
Aquaporins
Biological Evolution
Ceratitis capitata
Ceratitis capitata - genetics
Chemoreception
Drosophila
Evolution & development
evolutionary adaptation
fruits
Gene families
genes
Genetic analysis
Genome, Insect
Genomes
High-Throughput Nucleotide Sequencing - methods
Host range
human health
Humans
imagos
Inbreeding
insect pests
insecticides
integrated pest management
Introduced Species
Invasiveness
metabolism
Molecular Sequence Annotation
Niches
Nucleotide sequence
opsin
Opsins
Pest control
Pest Control, Biological
Pests
sterile insect technique
Sterilized organisms
Structure-function relationships
subtropics
vegetables
Chromosomal synteny
Insect adaptation
Medfly genome
Insect orthology
Gene family evolution
Tephritid genomics
Insect invasiveness
Medfly integrated pest management (IPM)
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Abstract The Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of fruits and vegetables. It exhibits a unique ability to invade and adapt to ecological niches throughout tropical and subtropical regions of the world, though medfly infestations have been prevented and controlled by the sterile insect technique (SIT) as part of integrated pest management programs (IPMs). The genetic analysis and manipulation of medfly has been subject to intensive study in an effort to improve SIT efficacy and other aspects of IPM control. The 479 Mb medfly genome is sequenced from adult flies from lines inbred for 20 generations. A high-quality assembly is achieved having a contig N50 of 45.7 kb and scaffold N50 of 4.06 Mb. In-depth curation of more than 1800 messenger RNAs shows specific gene expansions that can be related to invasiveness and host adaptation, including gene families for chemoreception, toxin and insecticide metabolism, cuticle proteins, opsins, and aquaporins. We identify genes relevant to IPM control, including those required to improve SIT. The medfly genome sequence provides critical insights into the biology of one of the most serious and widespread agricultural pests. This knowledge should significantly advance the means of controlling the size and invasive potential of medfly populations. Its close relationship to Drosophila, and other insect species important to agriculture and human health, will further comparative functional and structural studies of insect genomes that should broaden our understanding of gene family evolution.
AbstractList BACKGROUND: The Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of fruits and vegetables. It exhibits a unique ability to invade and adapt to ecological niches throughout tropical and subtropical regions of the world, though medfly infestations have been prevented and controlled by the sterile insect technique (SIT) as part of integrated pest management programs (IPMs). The genetic analysis and manipulation of medfly has been subject to intensive study in an effort to improve SIT efficacy and other aspects of IPM control. RESULTS: The 479 Mb medfly genome is sequenced from adult flies from lines inbred for 20 generations. A high-quality assembly is achieved having a contig N50 of 45.7 kb and scaffold N50 of 4.06 Mb. In-depth curation of more than 1800 messenger RNAs shows specific gene expansions that can be related to invasiveness and host adaptation, including gene families for chemoreception, toxin and insecticide metabolism, cuticle proteins, opsins, and aquaporins. We identify genes relevant to IPM control, including those required to improve SIT. CONCLUSIONS: The medfly genome sequence provides critical insights into the biology of one of the most serious and widespread agricultural pests. This knowledge should significantly advance the means of controlling the size and invasive potential of medfly populations. Its close relationship to Drosophila, and other insect species important to agriculture and human health, will further comparative functional and structural studies of insect genomes that should broaden our understanding of gene family evolution.
The Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of fruits and vegetables. It exhibits a unique ability to invade and adapt to ecological niches throughout tropical and subtropical regions of the world, though medfly infestations have been prevented and controlled by the sterile insect technique (SIT) as part of integrated pest management programs (IPMs). The genetic analysis and manipulation of medfly has been subject to intensive study in an effort to improve SIT efficacy and other aspects of IPM control. The 479 Mb medfly genome is sequenced from adult flies from lines inbred for 20 generations. A high-quality assembly is achieved having a contig N50 of 45.7 kb and scaffold N50 of 4.06 Mb. In-depth curation of more than 1800 messenger RNAs shows specific gene expansions that can be related to invasiveness and host adaptation, including gene families for chemoreception, toxin and insecticide metabolism, cuticle proteins, opsins, and aquaporins. We identify genes relevant to IPM control, including those required to improve SIT. The medfly genome sequence provides critical insights into the biology of one of the most serious and widespread agricultural pests. This knowledge should significantly advance the means of controlling the size and invasive potential of medfly populations. Its close relationship to Drosophila, and other insect species important to agriculture and human health, will further comparative functional and structural studies of insect genomes that should broaden our understanding of gene family evolution.
The Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of fruits and vegetables. It exhibits a unique ability to invade and adapt to ecological niches throughout tropical and subtropical regions of the world, though medfly infestations have been prevented and controlled by the sterile insect technique (SIT) as part of integrated pest management programs (IPMs). The genetic analysis and manipulation of medfly has been subject to intensive study in an effort to improve SIT efficacy and other aspects of IPM control.BACKGROUNDThe Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of fruits and vegetables. It exhibits a unique ability to invade and adapt to ecological niches throughout tropical and subtropical regions of the world, though medfly infestations have been prevented and controlled by the sterile insect technique (SIT) as part of integrated pest management programs (IPMs). The genetic analysis and manipulation of medfly has been subject to intensive study in an effort to improve SIT efficacy and other aspects of IPM control.The 479 Mb medfly genome is sequenced from adult flies from lines inbred for 20 generations. A high-quality assembly is achieved having a contig N50 of 45.7 kb and scaffold N50 of 4.06 Mb. In-depth curation of more than 1800 messenger RNAs shows specific gene expansions that can be related to invasiveness and host adaptation, including gene families for chemoreception, toxin and insecticide metabolism, cuticle proteins, opsins, and aquaporins. We identify genes relevant to IPM control, including those required to improve SIT.RESULTSThe 479 Mb medfly genome is sequenced from adult flies from lines inbred for 20 generations. A high-quality assembly is achieved having a contig N50 of 45.7 kb and scaffold N50 of 4.06 Mb. In-depth curation of more than 1800 messenger RNAs shows specific gene expansions that can be related to invasiveness and host adaptation, including gene families for chemoreception, toxin and insecticide metabolism, cuticle proteins, opsins, and aquaporins. We identify genes relevant to IPM control, including those required to improve SIT.The medfly genome sequence provides critical insights into the biology of one of the most serious and widespread agricultural pests. This knowledge should significantly advance the means of controlling the size and invasive potential of medfly populations. Its close relationship to Drosophila, and other insect species important to agriculture and human health, will further comparative functional and structural studies of insect genomes that should broaden our understanding of gene family evolution.CONCLUSIONSThe medfly genome sequence provides critical insights into the biology of one of the most serious and widespread agricultural pests. This knowledge should significantly advance the means of controlling the size and invasive potential of medfly populations. Its close relationship to Drosophila, and other insect species important to agriculture and human health, will further comparative functional and structural studies of insect genomes that should broaden our understanding of gene family evolution.
ArticleNumber 192
Author Giers, Sarah D.
Paraskevopoulou, Maria D.
Muzny, Donna M.
Rosendale, Andrew J.
Qu, Jiaxin
Ortego, Félix
Poelchau, Monica
Werren, John H.
Karagkouni, Dimitra
Oberhofer, Georg
Dugan, Shannon
Schreiner, Patrick
Tsiamis, George
Gibbs, Richard A.
Gasperi, Giuliano
Wimmer, Ernst A.
Chao, Hsu
Malacrida, Anna R.
Dolan, Amanda
Salvemini, Marco
Scolari, Francesca
Siciliano, Paolo
Jones, Jeffery W.
Hatzigeorgiou, Artemis G.
Murali, Shwetha C.
Dinh, Huyen
Richards, Stephen
Worley, Kim C.
Doddapaneni, HarshaVardhan
Papanicolaou, Alexie
Castañera, Pedro
Zacharopoulou, Antigone
Reczko, Martin
Hughes, Daniel S. T.
Schetelig, Marc F.
Benoit, Joshua B.
Lee, Sandra L.
Geib, Scott
Handler, Alfred M.
Georgakilas, Georgios
Bourtzis, Kostas
Meccariello, Angela
Childers, Christopher
Sim, Sheina B.
Koskinioti, Panagiota
Savini, Grazia
González-Guzmán, Miguel
Vlachos, Ioannis S.
Saccone, Giuseppe
Curril, Ingrid
Mathiopoulos, Kostas
Murphy, Terence D.
Arensburger, Peter
Friedrich, Markus
Rosselot, Andrew E.
Ureña, Enric
Guillem-Amat, Ana
Han, Yi
Manni, Mosè
Robertson, H
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Issue 1
Keywords Chromosomal synteny
Insect adaptation
Medfly genome
Insect orthology
Gene family evolution
Tephritid genomics
Insect invasiveness
Medfly integrated pest management (IPM)
Language English
License Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
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Snippet The Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of fruits and...
Background The Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds of...
BACKGROUND: The Mediterranean fruit fly (medfly), Ceratitis capitata, is a major destructive insect pest due to its broad host range, which includes hundreds...
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StartPage 192
SubjectTerms Animals
Animals, Genetically Modified - genetics
Aquaporins
Biological Evolution
Ceratitis capitata
Ceratitis capitata - genetics
Chemoreception
Drosophila
Evolution & development
evolutionary adaptation
fruits
Gene families
genes
Genetic analysis
Genome, Insect
Genomes
High-Throughput Nucleotide Sequencing - methods
Host range
human health
Humans
imagos
Inbreeding
insect pests
insecticides
integrated pest management
Introduced Species
Invasiveness
metabolism
Molecular Sequence Annotation
Niches
Nucleotide sequence
opsin
Opsins
Pest control
Pest Control, Biological
Pests
sterile insect technique
Sterilized organisms
Structure-function relationships
subtropics
vegetables
Title The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species
URI https://www.ncbi.nlm.nih.gov/pubmed/27659211
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https://pubmed.ncbi.nlm.nih.gov/PMC5034548
Volume 17
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