Identification of differentially methylated genes as diagnostic and prognostic biomarkers of breast cancer
Aberrant DNA methylation is significantly associated with breast cancer. In this study, we aimed to determine novel methylation biomarkers using a bioinformatics analysis approach that could have clinical value for breast cancer diagnosis and prognosis. Firstly, differentially methylated DNA pattern...
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Published in | World journal of surgical oncology Vol. 19; no. 1; p. 29 |
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Main Authors | , , , , , , , , |
Format | Journal Article |
Language | English |
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BioMed Central Ltd
26.01.2021
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Abstract | Aberrant DNA methylation is significantly associated with breast cancer.
In this study, we aimed to determine novel methylation biomarkers using a bioinformatics analysis approach that could have clinical value for breast cancer diagnosis and prognosis. Firstly, differentially methylated DNA patterns were detected in breast cancer samples by comparing publicly available datasets (GSE72245 and GSE88883). Methylation levels in 7 selected methylation biomarkers were also estimated using the online tool UALCAN. Next, we evaluated the diagnostic value of these selected biomarkers in two independent cohorts, as well as in two mixed cohorts, through ROC curve analysis. Finally, prognostic value of the selected methylation biomarkers was evaluated breast cancer by the Kaplan-Meier plot analysis.
In this study, a total of 23 significant differentially methylated sites, corresponding to 9 different genes, were identified in breast cancer datasets. Among the 9 identified genes, ADCY4, CPXM1, DNM3, GNG4, MAST1, mir129-2, PRDM14, and ZNF177 were hypermethylated. Importantly, individual value of each selected methylation gene was greater than 0.9, whereas predictive value for all genes combined was 0.9998. We also found the AUC for the combined signature of 7 genes (ADCY4, CPXM1, DNM3, GNG4, MAST1, PRDM14, ZNF177) was 0.9998 [95% CI 0.9994-1], and the AUC for the combined signature of 3 genes (MAST1, PRDM14, and ZNF177) was 0.9991 [95% CI 0.9976-1]. Results from additional validation analyses showed that MAST1, PRDM14, and ZNF177 had high sensitivity, specificity, and accuracy for breast cancer diagnosis. Lastly, patient survival analysis revealed that high expression of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 were significantly associated with better overall survival.
Methylation pattern of MAST1, PRDM14, and ZNF177 may represent new diagnostic biomarkers for breast cancer, while methylation of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 may hold prognostic potential for breast cancer. |
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AbstractList | Abstract
Background
Aberrant DNA methylation is significantly associated with breast cancer.
Methods
In this study, we aimed to determine novel methylation biomarkers using a bioinformatics analysis approach that could have clinical value for breast cancer diagnosis and prognosis. Firstly, differentially methylated DNA patterns were detected in breast cancer samples by comparing publicly available datasets (GSE72245 and GSE88883). Methylation levels in 7 selected methylation biomarkers were also estimated using the online tool UALCAN. Next, we evaluated the diagnostic value of these selected biomarkers in two independent cohorts, as well as in two mixed cohorts, through ROC curve analysis. Finally, prognostic value of the selected methylation biomarkers was evaluated breast cancer by the Kaplan-Meier plot analysis.
Results
In this study, a total of 23 significant differentially methylated sites, corresponding to 9 different genes, were identified in breast cancer datasets. Among the 9 identified genes,
ADCY4
,
CPXM1
,
DNM3
,
GNG4
,
MAST1
,
mir129-2
,
PRDM14
, and
ZNF177
were hypermethylated. Importantly, individual value of each selected methylation gene was greater than 0.9, whereas predictive value for all genes combined was 0.9998. We also found the AUC for the combined signature of 7 genes (
ADCY4
,
CPXM1
,
DNM3
,
GNG4
,
MAST1
,
PRDM14
,
ZNF177
) was 0.9998 [95% CI 0.9994–1], and the AUC for the combined signature of 3 genes (
MAST1
,
PRDM14
, and
ZNF177
) was 0.9991 [95% CI 0.9976–1]. Results from additional validation analyses showed that
MAST1
,
PRDM14
, and
ZNF177
had high sensitivity, specificity, and accuracy for breast cancer diagnosis. Lastly, patient survival analysis revealed that high expression of
ADCY4
,
CPXM1
,
DNM3
,
PRDM14
,
PRKCB
, and
ZNF177
were significantly associated with better overall survival.
Conclusions
Methylation pattern of
MAST1
,
PRDM14
, and
ZNF177
may represent new diagnostic biomarkers for breast cancer, while methylation of
ADCY4
,
CPXM1
,
DNM3
,
PRDM14
,
PRKCB
, and
ZNF177
may hold prognostic potential for breast cancer. BACKGROUNDAberrant DNA methylation is significantly associated with breast cancer. METHODSIn this study, we aimed to determine novel methylation biomarkers using a bioinformatics analysis approach that could have clinical value for breast cancer diagnosis and prognosis. Firstly, differentially methylated DNA patterns were detected in breast cancer samples by comparing publicly available datasets (GSE72245 and GSE88883). Methylation levels in 7 selected methylation biomarkers were also estimated using the online tool UALCAN. Next, we evaluated the diagnostic value of these selected biomarkers in two independent cohorts, as well as in two mixed cohorts, through ROC curve analysis. Finally, prognostic value of the selected methylation biomarkers was evaluated breast cancer by the Kaplan-Meier plot analysis. RESULTSIn this study, a total of 23 significant differentially methylated sites, corresponding to 9 different genes, were identified in breast cancer datasets. Among the 9 identified genes, ADCY4, CPXM1, DNM3, GNG4, MAST1, mir129-2, PRDM14, and ZNF177 were hypermethylated. Importantly, individual value of each selected methylation gene was greater than 0.9, whereas predictive value for all genes combined was 0.9998. We also found the AUC for the combined signature of 7 genes (ADCY4, CPXM1, DNM3, GNG4, MAST1, PRDM14, ZNF177) was 0.9998 [95% CI 0.9994-1], and the AUC for the combined signature of 3 genes (MAST1, PRDM14, and ZNF177) was 0.9991 [95% CI 0.9976-1]. Results from additional validation analyses showed that MAST1, PRDM14, and ZNF177 had high sensitivity, specificity, and accuracy for breast cancer diagnosis. Lastly, patient survival analysis revealed that high expression of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 were significantly associated with better overall survival. CONCLUSIONSMethylation pattern of MAST1, PRDM14, and ZNF177 may represent new diagnostic biomarkers for breast cancer, while methylation of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 may hold prognostic potential for breast cancer. Aberrant DNA methylation is significantly associated with breast cancer. In this study, we aimed to determine novel methylation biomarkers using a bioinformatics analysis approach that could have clinical value for breast cancer diagnosis and prognosis. Firstly, differentially methylated DNA patterns were detected in breast cancer samples by comparing publicly available datasets (GSE72245 and GSE88883). Methylation levels in 7 selected methylation biomarkers were also estimated using the online tool UALCAN. Next, we evaluated the diagnostic value of these selected biomarkers in two independent cohorts, as well as in two mixed cohorts, through ROC curve analysis. Finally, prognostic value of the selected methylation biomarkers was evaluated breast cancer by the Kaplan-Meier plot analysis. In this study, a total of 23 significant differentially methylated sites, corresponding to 9 different genes, were identified in breast cancer datasets. Among the 9 identified genes, ADCY4, CPXM1, DNM3, GNG4, MAST1, mir129-2, PRDM14, and ZNF177 were hypermethylated. Importantly, individual value of each selected methylation gene was greater than 0.9, whereas predictive value for all genes combined was 0.9998. We also found the AUC for the combined signature of 7 genes (ADCY4, CPXM1, DNM3, GNG4, MAST1, PRDM14, ZNF177) was 0.9998 [95% CI 0.9994-1], and the AUC for the combined signature of 3 genes (MAST1, PRDM14, and ZNF177) was 0.9991 [95% CI 0.9976-1]. Results from additional validation analyses showed that MAST1, PRDM14, and ZNF177 had high sensitivity, specificity, and accuracy for breast cancer diagnosis. Lastly, patient survival analysis revealed that high expression of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 were significantly associated with better overall survival. Methylation pattern of MAST1, PRDM14, and ZNF177 may represent new diagnostic biomarkers for breast cancer, while methylation of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 may hold prognostic potential for breast cancer. Aberrant DNA methylation is significantly associated with breast cancer. In this study, we aimed to determine novel methylation biomarkers using a bioinformatics analysis approach that could have clinical value for breast cancer diagnosis and prognosis. Firstly, differentially methylated DNA patterns were detected in breast cancer samples by comparing publicly available datasets (GSE72245 and GSE88883). Methylation levels in 7 selected methylation biomarkers were also estimated using the online tool UALCAN. Next, we evaluated the diagnostic value of these selected biomarkers in two independent cohorts, as well as in two mixed cohorts, through ROC curve analysis. Finally, prognostic value of the selected methylation biomarkers was evaluated breast cancer by the Kaplan-Meier plot analysis. In this study, a total of 23 significant differentially methylated sites, corresponding to 9 different genes, were identified in breast cancer datasets. Among the 9 identified genes, ADCY4, CPXM1, DNM3, GNG4, MAST1, mir129-2, PRDM14, and ZNF177 were hypermethylated. Importantly, individual value of each selected methylation gene was greater than 0.9, whereas predictive value for all genes combined was 0.9998. We also found the AUC for the combined signature of 7 genes (ADCY4, CPXM1, DNM3, GNG4, MAST1, PRDM14, ZNF177) was 0.9998 [95% CI 0.9994-1], and the AUC for the combined signature of 3 genes (MAST1, PRDM14, and ZNF177) was 0.9991 [95% CI 0.9976-1]. Results from additional validation analyses showed that MAST1, PRDM14, and ZNF177 had high sensitivity, specificity, and accuracy for breast cancer diagnosis. Lastly, patient survival analysis revealed that high expression of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 were significantly associated with better overall survival. Methylation pattern of MAST1, PRDM14, and ZNF177 may represent new diagnostic biomarkers for breast cancer, while methylation of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 may hold prognostic potential for breast cancer. Background Aberrant DNA methylation is significantly associated with breast cancer. Methods In this study, we aimed to determine novel methylation biomarkers using a bioinformatics analysis approach that could have clinical value for breast cancer diagnosis and prognosis. Firstly, differentially methylated DNA patterns were detected in breast cancer samples by comparing publicly available datasets (GSE72245 and GSE88883). Methylation levels in 7 selected methylation biomarkers were also estimated using the online tool UALCAN. Next, we evaluated the diagnostic value of these selected biomarkers in two independent cohorts, as well as in two mixed cohorts, through ROC curve analysis. Finally, prognostic value of the selected methylation biomarkers was evaluated breast cancer by the Kaplan-Meier plot analysis. Results In this study, a total of 23 significant differentially methylated sites, corresponding to 9 different genes, were identified in breast cancer datasets. Among the 9 identified genes, ADCY4, CPXM1, DNM3, GNG4, MAST1, mir129-2, PRDM14, and ZNF177 were hypermethylated. Importantly, individual value of each selected methylation gene was greater than 0.9, whereas predictive value for all genes combined was 0.9998. We also found the AUC for the combined signature of 7 genes (ADCY4, CPXM1, DNM3, GNG4, MAST1, PRDM14, ZNF177) was 0.9998 [95% CI 0.9994–1], and the AUC for the combined signature of 3 genes (MAST1, PRDM14, and ZNF177) was 0.9991 [95% CI 0.9976–1]. Results from additional validation analyses showed that MAST1, PRDM14, and ZNF177 had high sensitivity, specificity, and accuracy for breast cancer diagnosis. Lastly, patient survival analysis revealed that high expression of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 were significantly associated with better overall survival. Conclusions Methylation pattern of MAST1, PRDM14, and ZNF177 may represent new diagnostic biomarkers for breast cancer, while methylation of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 may hold prognostic potential for breast cancer. Background Aberrant DNA methylation is significantly associated with breast cancer. Methods In this study, we aimed to determine novel methylation biomarkers using a bioinformatics analysis approach that could have clinical value for breast cancer diagnosis and prognosis. Firstly, differentially methylated DNA patterns were detected in breast cancer samples by comparing publicly available datasets (GSE72245 and GSE88883). Methylation levels in 7 selected methylation biomarkers were also estimated using the online tool UALCAN. Next, we evaluated the diagnostic value of these selected biomarkers in two independent cohorts, as well as in two mixed cohorts, through ROC curve analysis. Finally, prognostic value of the selected methylation biomarkers was evaluated breast cancer by the Kaplan-Meier plot analysis. Results In this study, a total of 23 significant differentially methylated sites, corresponding to 9 different genes, were identified in breast cancer datasets. Among the 9 identified genes, ADCY4, CPXM1, DNM3, GNG4, MAST1, mir129-2, PRDM14, and ZNF177 were hypermethylated. Importantly, individual value of each selected methylation gene was greater than 0.9, whereas predictive value for all genes combined was 0.9998. We also found the AUC for the combined signature of 7 genes (ADCY4, CPXM1, DNM3, GNG4, MAST1, PRDM14, ZNF177) was 0.9998 [95% CI 0.9994-1], and the AUC for the combined signature of 3 genes (MAST1, PRDM14, and ZNF177) was 0.9991 [95% CI 0.9976-1]. Results from additional validation analyses showed that MAST1, PRDM14, and ZNF177 had high sensitivity, specificity, and accuracy for breast cancer diagnosis. Lastly, patient survival analysis revealed that high expression of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 were significantly associated with better overall survival. Conclusions Methylation pattern of MAST1, PRDM14, and ZNF177 may represent new diagnostic biomarkers for breast cancer, while methylation of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 may hold prognostic potential for breast cancer. Keywords: Breast cancer, Methylation, Biomarkers, Diagnosis, Prognosis Abstract Background Aberrant DNA methylation is significantly associated with breast cancer. Methods In this study, we aimed to determine novel methylation biomarkers using a bioinformatics analysis approach that could have clinical value for breast cancer diagnosis and prognosis. Firstly, differentially methylated DNA patterns were detected in breast cancer samples by comparing publicly available datasets (GSE72245 and GSE88883). Methylation levels in 7 selected methylation biomarkers were also estimated using the online tool UALCAN. Next, we evaluated the diagnostic value of these selected biomarkers in two independent cohorts, as well as in two mixed cohorts, through ROC curve analysis. Finally, prognostic value of the selected methylation biomarkers was evaluated breast cancer by the Kaplan-Meier plot analysis. Results In this study, a total of 23 significant differentially methylated sites, corresponding to 9 different genes, were identified in breast cancer datasets. Among the 9 identified genes, ADCY4, CPXM1, DNM3, GNG4, MAST1, mir129-2, PRDM14, and ZNF177 were hypermethylated. Importantly, individual value of each selected methylation gene was greater than 0.9, whereas predictive value for all genes combined was 0.9998. We also found the AUC for the combined signature of 7 genes (ADCY4, CPXM1, DNM3, GNG4, MAST1, PRDM14, ZNF177) was 0.9998 [95% CI 0.9994–1], and the AUC for the combined signature of 3 genes (MAST1, PRDM14, and ZNF177) was 0.9991 [95% CI 0.9976–1]. Results from additional validation analyses showed that MAST1, PRDM14, and ZNF177 had high sensitivity, specificity, and accuracy for breast cancer diagnosis. Lastly, patient survival analysis revealed that high expression of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 were significantly associated with better overall survival. Conclusions Methylation pattern of MAST1, PRDM14, and ZNF177 may represent new diagnostic biomarkers for breast cancer, while methylation of ADCY4, CPXM1, DNM3, PRDM14, PRKCB, and ZNF177 may hold prognostic potential for breast cancer. |
ArticleNumber | 29 |
Audience | Academic |
Author | Huang, Ping Zhang, Guo-Bing Ye, Zi-Qi Xuan, Zi-Xue Ye, Qiang Jiang, Jin-Ying Zhao, Hong-Ying Mao, Xiao-Hong Shao, Yan-Fei |
Author_xml | – sequence: 1 givenname: Xiao-Hong surname: Mao fullname: Mao, Xiao-Hong organization: Department of Pharmacy, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, China – sequence: 2 givenname: Qiang surname: Ye fullname: Ye, Qiang organization: Department of Pharmacy, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, China – sequence: 3 givenname: Guo-Bing surname: Zhang fullname: Zhang, Guo-Bing organization: Department of Pharmacy, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, China – sequence: 4 givenname: Jin-Ying surname: Jiang fullname: Jiang, Jin-Ying organization: Department of Pharmacy, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, China – sequence: 5 givenname: Hong-Ying surname: Zhao fullname: Zhao, Hong-Ying organization: Department of Pharmacy, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, China – sequence: 6 givenname: Yan-Fei surname: Shao fullname: Shao, Yan-Fei organization: Department of Pharmacy, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, China – sequence: 7 givenname: Zi-Qi surname: Ye fullname: Ye, Zi-Qi organization: Department of Pharmacy, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China – sequence: 8 givenname: Zi-Xue orcidid: 0000-0002-6296-4062 surname: Xuan fullname: Xuan, Zi-Xue email: xuanzixue0222@163.com organization: Department of Pharmacy, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, China. xuanzixue0222@163.com – sequence: 9 givenname: Ping surname: Huang fullname: Huang, Ping email: huangping1841@zjcc.org.cn organization: Department of Pharmacy, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, China. huangping1841@zjcc.org.cn |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33499882$$D View this record in MEDLINE/PubMed |
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Keywords | Biomarkers Breast cancer Prognosis Diagnosis Methylation |
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PublicationTitle | World journal of surgical oncology |
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References | S Zhang (2124_CR11) 2018; 12 T Oishi (2124_CR25) 2017; 7 N Mahmood (2124_CR7) 2019; 1164 A Koch (2124_CR6) 2018; 15 YC Chen (2124_CR28) 2015; 54 DS Chandrashekar (2124_CR16) 2017; 19 2124_CR19 F Bray (2124_CR1) 2018; 68 BM Downs (2124_CR5) 2019; 25 TC de Ruijter (2124_CR12) 2020; 22 S Dong (2124_CR10) 2019; 79 L Lv (2124_CR18) 2020; 11 J Moss (2124_CR13) 2020; 31 X Chen (2124_CR4) 2019; 20 S Snellenberg (2124_CR27) 2014; 35 F Picardo (2124_CR9) 2019; 11 A Diaz-Lagares (2124_CR17) 2016; 22 X Yu (2124_CR24) 2020; 11 A Goldhirsch (2124_CR2) 2013; 24 X Sun (2124_CR20) 2020; 13 H Taniguchi (2124_CR26) 1974; 2019 L Barault (2124_CR15) 2018; 67 Q Tang (2124_CR3) 2016; 8 M Klutstein (2124_CR8) 2016; 76 M Nakakido (2124_CR29) 2016; 49 TC de Ruijter (2124_CR21) 2019; 3 A Sybirna (2124_CR22) 2020; 11 L Jin (2124_CR23) 2018; 34 A Sangtani (2124_CR14) 2020; 156 |
References_xml | – volume: 79 start-page: 6101 year: 2019 ident: 2124_CR10 publication-title: Cancer Res doi: 10.1158/0008-5472.CAN-19-1019 contributor: fullname: S Dong – volume: 11 start-page: 340 year: 2020 ident: 2124_CR24 publication-title: Cell Death Dis doi: 10.1038/s41419-020-2532-y contributor: fullname: X Yu – volume: 35 start-page: 2611 year: 2014 ident: 2124_CR27 publication-title: Carcinogenesis doi: 10.1093/carcin/bgu197 contributor: fullname: S Snellenberg – volume: 25 start-page: 6357 year: 2019 ident: 2124_CR5 publication-title: Clin Cancer Res doi: 10.1158/1078-0432.CCR-18-3277 contributor: fullname: BM Downs – volume: 13 start-page: 4 year: 2020 ident: 2124_CR20 publication-title: BMC Med Genet contributor: fullname: X Sun – volume: 7 start-page: 12 year: 2017 ident: 2124_CR25 publication-title: J Clin Transl Endocrinol contributor: fullname: T Oishi – volume: 22 start-page: 3361 year: 2016 ident: 2124_CR17 publication-title: Clin Cancer Res doi: 10.1158/1078-0432.CCR-15-2346 contributor: fullname: A Diaz-Lagares – volume: 8 start-page: 115 year: 2016 ident: 2124_CR3 publication-title: Clin Epigenetics doi: 10.1186/s13148-016-0282-6 contributor: fullname: Q Tang – volume: 12 start-page: 1047 year: 2018 ident: 2124_CR11 publication-title: Mol Oncol doi: 10.1002/1878-0261.12309 contributor: fullname: S Zhang – volume: 22 start-page: 13 year: 2020 ident: 2124_CR12 publication-title: Breast Cancer Res doi: 10.1186/s13058-020-1250-9 contributor: fullname: TC de Ruijter – ident: 2124_CR19 doi: 10.1186/s12885-019-5403-0 – volume: 31 start-page: 395 year: 2020 ident: 2124_CR13 publication-title: Ann Oncol doi: 10.1016/j.annonc.2019.11.014 contributor: fullname: J Moss – volume: 15 start-page: 459 year: 2018 ident: 2124_CR6 publication-title: Nat Rev Clin Oncol doi: 10.1038/s41571-018-0004-4 contributor: fullname: A Koch – volume: 11 start-page: 294 year: 2020 ident: 2124_CR18 publication-title: Front Genet doi: 10.3389/fgene.2020.00294 contributor: fullname: L Lv – volume: 54 start-page: 572 year: 2015 ident: 2124_CR28 publication-title: Taiwan J Obstet Gynecol doi: 10.1016/j.tjog.2015.08.010 contributor: fullname: YC Chen – volume: 19 start-page: 649 year: 2017 ident: 2124_CR16 publication-title: Neoplasia doi: 10.1016/j.neo.2017.05.002 contributor: fullname: DS Chandrashekar – volume: 67 start-page: 1995 year: 2018 ident: 2124_CR15 publication-title: Gut doi: 10.1136/gutjnl-2016-313372 contributor: fullname: L Barault – volume: 20 start-page: 823 year: 2019 ident: 2124_CR4 publication-title: BMC Genomics doi: 10.1186/s12864-019-6142-y contributor: fullname: X Chen – volume: 49 start-page: 868 year: 2016 ident: 2124_CR29 publication-title: Int J Oncol doi: 10.3892/ijo.2016.3607 contributor: fullname: M Nakakido – volume: 11 start-page: 1282 year: 2020 ident: 2124_CR22 publication-title: Nat Commun doi: 10.1038/s41467-020-15042-0 contributor: fullname: A Sybirna – volume: 24 start-page: 2206 year: 2013 ident: 2124_CR2 publication-title: Ann Oncol doi: 10.1093/annonc/mdt303 contributor: fullname: A Goldhirsch – volume: 3 start-page: 20 year: 2019 ident: 2124_CR21 publication-title: Diagn Progn Res doi: 10.1186/s41512-019-0065-6 contributor: fullname: TC de Ruijter – volume: 2019 start-page: 233 year: 1974 ident: 2124_CR26 publication-title: Methods Mol Biol contributor: fullname: H Taniguchi – volume: 11 start-page: 1598 year: 2019 ident: 2124_CR9 publication-title: Cancers (Basel) doi: 10.3390/cancers11101598 contributor: fullname: F Picardo – volume: 156 start-page: 387 year: 2020 ident: 2124_CR14 publication-title: Gynecol Oncol doi: 10.1016/j.ygyno.2019.11.028 contributor: fullname: A Sangtani – volume: 76 start-page: 3446 year: 2016 ident: 2124_CR8 publication-title: Cancer Res doi: 10.1158/0008-5472.CAN-15-3278 contributor: fullname: M Klutstein – volume: 34 start-page: 315 year: 2018 ident: 2124_CR23 publication-title: Cancer Cell doi: 10.1016/j.ccell.2018.06.012 contributor: fullname: L Jin – volume: 1164 start-page: 179 year: 2019 ident: 2124_CR7 publication-title: Adv Exp Med Biol doi: 10.1007/978-3-030-22254-3_14 contributor: fullname: N Mahmood – volume: 68 start-page: 394 year: 2018 ident: 2124_CR1 publication-title: CA Cancer J Clin doi: 10.3322/caac.21492 contributor: fullname: F Bray |
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Snippet | Aberrant DNA methylation is significantly associated with breast cancer.
In this study, we aimed to determine novel methylation biomarkers using a... Abstract Background Aberrant DNA methylation is significantly associated with breast cancer. Methods In this study, we aimed to determine novel methylation... Background Aberrant DNA methylation is significantly associated with breast cancer. Methods In this study, we aimed to determine novel methylation biomarkers... Aberrant DNA methylation is significantly associated with breast cancer. In this study, we aimed to determine novel methylation biomarkers using a... BACKGROUNDAberrant DNA methylation is significantly associated with breast cancer. METHODSIn this study, we aimed to determine novel methylation biomarkers... Abstract Background Aberrant DNA methylation is significantly associated with breast cancer. Methods In this study, we aimed to determine novel methylation... |
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SubjectTerms | Bioinformatics Biological markers Biomarkers Biomarkers, Tumor - genetics Breast cancer Breast Neoplasms - diagnosis Breast Neoplasms - genetics Care and treatment Datasets Deoxyribonucleic acid Development and progression Diagnosis DNA DNA Methylation Gene Expression Regulation, Neoplastic Genes Genetic aspects Health aspects Humans Identification and classification Kaplan-Meier Estimate Kinases Methylation Prognosis Survival |
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Title | Identification of differentially methylated genes as diagnostic and prognostic biomarkers of breast cancer |
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