cis-Acting signals involved in termination of vesicular stomatitis virus mRNA synthesis include the conserved AUAC and the U7 signal for polyadenylation

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Published inJournal of Virology Vol. 71; no. 11; pp. 8718 - 8725
Main Authors Barr, J N, Whelan, S P, Wertz, G W
Format Journal Article
LanguageEnglish
Published United States American Society for Microbiology 01.11.1997
Subjects
Base Sequence
DNA-Directed RNA Polymerases - metabolism
Gene Expression Regulation, Viral
Poly A
Regulatory Sequences, Nucleic Acid
RNA, Messenger - biosynthesis
RNA, Viral - biosynthesis
Terminator Regions, Genetic
Transcription, Genetic
Vesicular stomatitis Indiana virus - enzymology
Vesicular stomatitis Indiana virus - genetics
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Abstract Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit StumbleUpon Twitter current issue Spotlights in the Current Issue JVI About JVI Subscribers Authors Reviewers Advertisers Inquiries from the Press Permissions & Commercial Reprints ASM Journals Public Access Policy JVI RSS Feeds 1752 N Street N.W. • Washington DC 20036 202.737.3600 • 202.942.9355 fax • journals@asmusa.org Print ISSN: 0022-538X Online ISSN: 1098-5514 Copyright © 2014 by the American Society for Microbiology.   For an alternate route to JVI .asm.org, visit: JVI       
AbstractList We investigated the cis-acting sequences involved in termination of vesicular stomatis virus mRNA synthesis by using bicistronic genomic analogs. All of the cis-acting signals necessary for termination reside within the first 13 nucleotides of the 23-nucleotide conserved gene junction. This 13-nucleotide termination sequence at the end of the upstream gene comprises the tetranucleotide AUAC, the tract containing seven uridines (U7 tract), and the intergenic dinucleotide (GA), but it does not include the downstream gene start sequence. Data presented here show that upstream mRNA termination is independent of downstream mRNA initiation. Alteration of any nucleotide in the 13-nucleotide sequence decreased the termination activity of the gene junction and resulted in increased synthesis of a bicistronic readthrough RNA. This finding indicated that the wild-type gene junction has evolved to achieve the maximum termination efficiency. The most critical position of the AUAC sequence was the C, which could not be altered without complete loss of mRNA termination. Reducing the length of the wild-type U7 tract to zero, five, or six U residues also totally abolished mRNA termination, resulting in exclusive synthesis of the bicistronic readthrough mRNA. Shortening the wild-type U7 tract to either five or six U residues abolished VSV polymerase slippage during readthrough RNA synthesis. Since neither the U5 nor U6 template was able to direct mRNA termination, these data imply that polymerase slippage is a prerequisite for termination. Evidence is also presented to show that in addition to causing polymerase slippage, the U7 tract itself or its poly(A) product constitutes an essential signal for mRNA termination.
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Author J N Barr
G W Wertz
S P Whelan
AuthorAffiliation Department of Microbiology, University of Alabama at Birmingham, 35294, USA
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We investigated the cis-acting sequences involved in termination of vesicular stomatis virus mRNA synthesis by using bicistronic genomic analogs. All of the...
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SubjectTerms Base Sequence
DNA-Directed RNA Polymerases - metabolism
Gene Expression Regulation, Viral
Poly A
Regulatory Sequences, Nucleic Acid
RNA, Messenger - biosynthesis
RNA, Viral - biosynthesis
Terminator Regions, Genetic
Transcription, Genetic
Vesicular stomatitis Indiana virus - enzymology
Vesicular stomatitis Indiana virus - genetics
Title cis-Acting signals involved in termination of vesicular stomatitis virus mRNA synthesis include the conserved AUAC and the U7 signal for polyadenylation
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