Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

• Published in: The ISME Journal Vol. 6; no. 7; pp. 1378 - 1390
• Main Authors: Knief, Claudia, Delmotte, Nathanaël, Chaffron, Samuel, Stark, Manuel, Innerebner, Gerd, Wassmann, Reiner, von Mering, Christian, Vorholt, Julia A
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 01.07.2012; Oxford University Press; Nature Publishing Group
• Subjects: Archaea; Archaea - classification; Archaea - genetics; Archaea - isolation & purification; Archaea - metabolism; Bacteria; Bacteria - classification; Bacteria - genetics; Bacteria - isolation & purification; Bacteria - metabolism; Biochemistry, Molecular Biology; Bioinformatics; Biomedical and Life Sciences; Carbon - metabolism; Computer Science; Cultivars; Ecology; Evolutionary Biology; Genomics; Habitat; Life Sciences; Metagenome; Methanogenesis; Methanol; Methanol - metabolism; Methylobacterium; Methylobacterium - classification; Methylobacterium - metabolism; Microbial activity; Microbial Ecology; Microbial Genetics and Genomics; Microbiology; Microorganisms; NifH gene; Original; original-article; Oryza - metabolism; Oryza - microbiology; Oryza sativa; Phyllosphere; Physiology; Proteins; Proteome - analysis; Pyruvic acid; reductase; Rhizosphere; Stress; Transport processes; microbial community; phyllosphere; rice; metaproteogenomics; rhizosphere

The above- and below-ground parts of rice plants create specific habitats for various microorganisms. In this study, we characterized the phyllosphere and rhizosphere microbiota of rice cultivars using a metaproteogenomic approach to get insight into the physiology of the bacteria and archaea that l...