Recommended nomenclature for five mammalian carboxylesterase gene families: human, mouse, and rat genes and proteins
Mammalian carboxylesterase (CES or Ces) genes encode enzymes that participate in xenobiotic, drug, and lipid metabolism in the body and are members of at least five gene families. Tandem duplications have added more genes for some families, particularly for mouse and rat genomes, which has caused co...
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Published in | Mammalian genome Vol. 21; no. 9-10; pp. 427 - 441 |
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Main Authors | , , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
New York
New York : Springer-Verlag
01.10.2010
Springer-Verlag Springer Nature B.V |
Subjects | |
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Abstract | Mammalian carboxylesterase (CES or Ces) genes encode enzymes that participate in xenobiotic, drug, and lipid metabolism in the body and are members of at least five gene families. Tandem duplications have added more genes for some families, particularly for mouse and rat genomes, which has caused confusion in naming rodent Ces genes. This article describes a new nomenclature system for human, mouse, and rat carboxylesterase genes that identifies homolog gene families and allocates a unique name for each gene. The guidelines of human, mouse, and rat gene nomenclature committees were followed and “CES” (human) and “Ces” (mouse and rat) root symbols were used followed by the family number (e.g., human CES1). Where multiple genes were identified for a family or where a clash occurred with an existing gene name, a letter was added (e.g., human CES4A; mouse and rat Ces1a) that reflected gene relatedness among rodent species (e.g., mouse and rat Ces1a). Pseudogenes were named by adding “P” and a number to the human gene name (e.g., human CES1P1) or by using a new letter followed by ps for mouse and rat Ces pseudogenes (e.g., Ces2d-ps). Gene transcript isoforms were named by adding the GenBank accession ID to the gene symbol (e.g., human CES1_AB119995 or mouse Ces1e_BC019208). This nomenclature improves our understanding of human, mouse, and rat CES/Ces gene families and facilitates research into the structure, function, and evolution of these gene families. It also serves as a model for naming CES genes from other mammalian species. |
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AbstractList | Mammalian carboxylesterase (CES or Ces) genes encode enzymes that participate in xenobiotic, drug, and lipid metabolism in the body and are members of at least five gene families. Tandem duplications have added more genes for some families, particularly for mouse and rat genomes, which has caused confusion in naming rodent Ces genes. This article describes a new nomenclature system for human, mouse, and rat carboxylesterase genes that identifies homolog gene families and allocates a unique name for each gene. The guidelines of human, mouse, and rat gene nomenclature committees were followed and "CES" (human) and "Ces" (mouse and rat) root symbols were used followed by the family number (e.g., human CES1). Where multiple genes were identified for a family or where a clash occurred with an existing gene name, a letter was added (e.g., human CES4A; mouse and rat Ces1a) that reflected gene relatedness among rodent species (e.g., mouse and rat Ces1a). Pseudogenes were named by adding "P" and a number to the human gene name (e.g., human CES1P1) or by using a new letter followed by ps for mouse and rat Ces pseudogenes (e.g., Ces2d-ps). Gene transcript isoforms were named by adding the GenBank accession ID to the gene symbol (e.g., human CES1_AB119995 or mouse Ces1e_BC019208). This nomenclature improves our understanding of human, mouse, and rat CES/Ces gene families and facilitates research into the structure, function, and evolution of these gene families. It also serves as a model for naming CES genes from other mammalian species.[PUBLICATION ABSTRACT] Mammalian carboxylesterase (CES or Ces) genes encode enzymes that participate in xenobiotic, drug, and lipid metabolism in the body and are members of at least five gene families. Tandem duplications have added more genes for some families, particularly for mouse and rat genomes, which has caused confusion in naming rodent Ces genes. This article describes a new nomenclature system for human, mouse, and rat carboxylesterase genes that identifies homolog gene families and allocates a unique name for each gene. The guidelines of human, mouse, and rat gene nomenclature committees were followed and “CES” (human) and “Ces” (mouse and rat) root symbols were used followed by the family number (e.g., human CES1). Where multiple genes were identified for a family or where a clash occurred with an existing gene name, a letter was added (e.g., human CES4A; mouse and rat Ces1a) that reflected gene relatedness among rodent species (e.g., mouse and rat Ces1a). Pseudogenes were named by adding “P” and a number to the human gene name (e.g., human CES1P1) or by using a new letter followed by ps for mouse and rat Ces pseudogenes (e.g., Ces2d-ps). Gene transcript isoforms were named by adding the GenBank accession ID to the gene symbol (e.g., human CES1_AB119995 or mouse Ces1e_BC019208). This nomenclature improves our understanding of human, mouse, and rat CES/Ces gene families and facilitates research into the structure, function, and evolution of these gene families. It also serves as a model for naming CES genes from other mammalian species. Mammalian carboxylesterase ( CES or Ces ) genes encode enzymes that participate in xenobiotic, drug, and lipid metabolism in the body and are members of at least five gene families. Tandem duplications have added more genes for some families, particularly for mouse and rat genomes, which has caused confusion in naming rodent Ces genes. This article describes a new nomenclature system for human, mouse, and rat carboxylesterase genes that identifies homolog gene families and allocates a unique name for each gene. The guidelines of human, mouse, and rat gene nomenclature committees were followed and “ CES ” (human) and “ Ces ” (mouse and rat) root symbols were used followed by the family number (e.g., human CES1 ). Where multiple genes were identified for a family or where a clash occurred with an existing gene name, a letter was added (e.g., human CES4A ; mouse and rat Ces1a ) that reflected gene relatedness among rodent species (e.g., mouse and rat Ces1a ). Pseudogenes were named by adding “ P ” and a number to the human gene name (e.g., human CES1P1 ) or by using a new letter followed by ps for mouse and rat Ces pseudogenes (e.g., Ces2d-ps ). Gene transcript isoforms were named by adding the GenBank accession ID to the gene symbol (e.g., human CES1_AB119995 or mouse Ces1e_BC019208 ). This nomenclature improves our understanding of human, mouse, and rat CES / Ces gene families and facilitates research into the structure, function, and evolution of these gene families. It also serves as a model for naming CES genes from other mammalian species. Mammalian carboxylesterase ( CES or Ces ) genes encode enzymes that participate in xenobiotic, drug, and lipid metabolism in the body and are members of at least five gene families. Tandem duplications have added more genes for some families, particularly for mouse and rat genomes, which has caused confusion in naming rodent Ces genes. This article describes a new nomenclature system for human, mouse, and rat carboxylesterase genes that identifies homolog gene families and allocates a unique name for each gene. The guidelines of human, mouse, and rat gene nomenclature committees were followed and “ CES ” (human) and “ Ces ” (mouse and rat) root symbols were used followed by the family number (e.g., human CES1 ). Where multiple genes were identified for a family or where a clash occurred with an existing gene name, a letter was added (e.g., human CES4A ; mouse and rat Ces1a ) that reflected gene relatedness among rodent species (e.g., mouse and rat Ces1a ). Pseudogenes were named by adding “ P ” and a number to the human gene name (e.g., human CES1P1 ) or by using a new letter followed by ps for mouse and rat Ces pseudogenes (e.g., Ces2d - ps ). Gene transcript isoforms were named by adding the GenBank accession ID to the gene symbol (e.g., human CES1_AB119995 or mouse Ces1e_BC019208 ). This nomenclature improves our understanding of human, mouse, and rat CES/Ces gene families and facilitates research into the structure, function, and evolution of these gene families. It also serves as a model for naming CES genes from other mammalian species. |
Author | Yokoi, Tsuyoshi Potter, Phillip M Miyazaki, Masao Redinbo, Matthew R Perkins, Everett J Lehner, Richard Yamashita, Tetsuro Holmes, Roger S Yan, Bingfan Wright, Matthew W Cox, Laura A Satoh, Tetsuo Maltais, Lois J Laulederkind, Stanley J. F Hosokawa, Masakiyo Imai, Teruko Ishibashi, Shun Robert, Jacques Zechner, Rudolf |
Author_xml | – sequence: 1 fullname: Holmes, Roger S – sequence: 2 fullname: Wright, Matthew W – sequence: 3 fullname: Laulederkind, Stanley J. F – sequence: 4 fullname: Cox, Laura A – sequence: 5 fullname: Hosokawa, Masakiyo – sequence: 6 fullname: Imai, Teruko – sequence: 7 fullname: Ishibashi, Shun – sequence: 8 fullname: Lehner, Richard – sequence: 9 fullname: Miyazaki, Masao – sequence: 10 fullname: Perkins, Everett J – sequence: 11 fullname: Potter, Phillip M – sequence: 12 fullname: Redinbo, Matthew R – sequence: 13 fullname: Robert, Jacques – sequence: 14 fullname: Satoh, Tetsuo – sequence: 15 fullname: Yamashita, Tetsuro – sequence: 16 fullname: Yan, Bingfan – sequence: 17 fullname: Yokoi, Tsuyoshi – sequence: 18 fullname: Zechner, Rudolf – sequence: 19 fullname: Maltais, Lois J |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/20931200$$D View this record in MEDLINE/PubMed |
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Keywords | Side Door Transcript Isoforms Cholesteryl Ester Hydrolase Homolog Gene Family Cholesteryl Ester Hydrolase Activity |
Language | English |
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PublicationTitle | Mammalian genome |
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Snippet | Mammalian carboxylesterase (CES or Ces) genes encode enzymes that participate in xenobiotic, drug, and lipid metabolism in the body and are members of at least... Mammalian carboxylesterase ( CES or Ces ) genes encode enzymes that participate in xenobiotic, drug, and lipid metabolism in the body and are members of at... |
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SubjectTerms | Amino Acid Sequence Animal Genetics and Genomics Animals Biomedical and Life Sciences Carboxylesterase - genetics Cell Biology Genes Human Genetics Humans Life Sciences Mice Multigene Family Protein Isoforms - genetics Pseudogenes Rats Sequence Homology Terminology as Topic |
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Title | Recommended nomenclature for five mammalian carboxylesterase gene families: human, mouse, and rat genes and proteins |
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