Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes

Resident gut microbes co-exist with transient bacteria to form the gut microbiota. Despite increasing evidence suggesting a role for transient microbes on gut microbiota function, the interplay between resident and transient members of this microbial community is poorly defined. We aimed to determin...

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Published in	The ISME Journal Vol. 10; no. 9; pp. 2235 - 2245
Main Authors	Zhang, Chenhong, Derrien, Muriel, Levenez, Florence, Brazeilles, Rémi, Ballal, Sonia A, Kim, Jason, Degivry, Marie-Christine, Quéré, Gaëlle, Garault, Peggy, van Hylckama Vlieg, Johan E T, Garrett, Wendy S, Doré, Joël, Veiga, Patrick
Format	Journal Article
Language	English
Published	London Nature Publishing Group UK 01.09.2016 Oxford University Press Nature Publishing Group
Subjects	631/326/2565/2134 Animals Bacteria Bacteria - genetics Bacteria - metabolism Biomedical and Life Sciences Cultured Milk Products - microbiology Dysbiosis - microbiology Dysbiosis - therapy Ecology Evolutionary Biology Feces - microbiology Gastrointestinal Microbiome Germ-Free Life Ingestion Lactococcus lactis Lactococcus lactis - physiology Life Sciences Male Microbial Ecology Microbial Genetics and Genomics Microbiology Original original-article Rats Sequence Analysis, DNA
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Abstract	Resident gut microbes co-exist with transient bacteria to form the gut microbiota. Despite increasing evidence suggesting a role for transient microbes on gut microbiota function, the interplay between resident and transient members of this microbial community is poorly defined. We aimed to determine the extent to which a host’s autochthonous gut microbiota influences niche permissivity to transient bacteria using a fermented milk product (FMP) as a vehicle for five food-borne bacterial strains. Using conventional and gnotobiotic rats and gut microbiome analyses (16S rRNA genes pyrosequencing and reverse transcription qPCR), we demonstrated that the clearance kinetics of one FMP bacterium, Lactococcus lactis CNCM I-1631, were dependent on the structure of the resident gut microbiota. Susceptibility of the resident gut microbiota to modulation by FMP intervention correlated with increased persistence of L. lactis . We also observed gut microbiome configurations that were associated with altered stability upon exposure to transient bacteria. Our study supports the concept that allochthonous bacteria have transient and subject-specific effects on the gut microbiome that can be leveraged to re-engineer the gut microbiome and improve dysbiosis-related diseases.
AbstractList	Resident gut microbes co-exist with transient bacteria to form the gut microbiota. Despite increasing evidence suggesting a role for transient microbes on gut microbiota function, the interplay between resident and transient members of this microbial community is poorly defined. We aimed to determine the extent to which a host’s autochthonous gut microbiota influences niche permissivity to transient bacteria using a fermented milk product (FMP) as a vehicle for five food-borne bacterial strains. Using conventional and gnotobiotic rats and gut microbiome analyses (16S rRNA genes pyrosequencing and reverse transcription qPCR), we demonstrated that the clearance kinetics of one FMP bacterium, Lactococcus lactis CNCM I-1631, were dependent on the structure of the resident gut microbiota. Susceptibility of the resident gut microbiota to modulation by FMP intervention correlated with increased persistence of L. lactis. We also observed gut microbiome configurations that were associated with altered stability upon exposure to transient bacteria. Our study supports the concept that allochthonous bacteria have transient and subject-specific effects on the gut microbiome that can be leveraged to re-engineer the gut microbiome and improve dysbiosis-related diseases. Resident gut microbes co-exist with transient bacteria to form the gut microbiota. Despite increasing evidence suggesting a role for transient microbes on gut microbiota function, the interplay between resident and transient members of this microbial community is poorly defined. We aimed to determine the extent to which a host's autochthonous gut microbiota influences niche permissivity to transient bacteria using a fermented milk product (FMP) as a vehicle for five food-borne bacterial strains. Using conventional and gnotobiotic rats and gut microbiome analyses (16S rRNA genes pyrosequencing and reverse transcription qPCR), we demonstrated that the clearance kinetics of one FMP bacterium, Lactococcus lactis CNCM I-1631, were dependent on the structure of the resident gut microbiota. Susceptibility of the resident gut microbiota to modulation by FMP intervention correlated with increased persistence of L. lactis . We also observed gut microbiome configurations that were associated with altered stability upon exposure to transient bacteria. Our study supports the concept that allochthonous bacteria have transient and subject-specific effects on the gut microbiome that can be leveraged to re-engineer the gut microbiome and improve dysbiosis-related diseases. Resident gut microbes co-exist with transient bacteria to form the gut microbiota. Despite increasing evidence suggesting a role for transient microbes on gut microbiota function, the interplay between resident and transient members of this microbial community is poorly defined. We aimed to determine the extent to which a host's autochthonous gut microbiota influences niche permissivity to transient bacteria using a fermented milk product (FMP) as a vehicle for five food-borne bacterial strains. Using conventional and gnotobiotic rats and gut microbiome analyses (16S rRNA genes pyrosequencing and reverse transcription qPCR), we demonstrated that the clearance kinetics of one FMP bacterium, Lactococcus lactis CNCM I-1631, were dependent on the structure of the resident gut microbiota. Susceptibility of the resident gut microbiota to modulation by FMP intervention correlated with increased persistence of L. lactis. We also observed gut microbiome configurations that were associated with altered stability upon exposure to transient bacteria. Our study supports the concept that allochthonous bacteria have transient and subject-specific effects on the gut microbiome that can be leveraged to re-engineer the gut microbiome and improve dysbiosis-related diseases.Resident gut microbes co-exist with transient bacteria to form the gut microbiota. Despite increasing evidence suggesting a role for transient microbes on gut microbiota function, the interplay between resident and transient members of this microbial community is poorly defined. We aimed to determine the extent to which a host's autochthonous gut microbiota influences niche permissivity to transient bacteria using a fermented milk product (FMP) as a vehicle for five food-borne bacterial strains. Using conventional and gnotobiotic rats and gut microbiome analyses (16S rRNA genes pyrosequencing and reverse transcription qPCR), we demonstrated that the clearance kinetics of one FMP bacterium, Lactococcus lactis CNCM I-1631, were dependent on the structure of the resident gut microbiota. Susceptibility of the resident gut microbiota to modulation by FMP intervention correlated with increased persistence of L. lactis. We also observed gut microbiome configurations that were associated with altered stability upon exposure to transient bacteria. Our study supports the concept that allochthonous bacteria have transient and subject-specific effects on the gut microbiome that can be leveraged to re-engineer the gut microbiome and improve dysbiosis-related diseases.
Author	Ballal, Sonia A Degivry, Marie-Christine van Hylckama Vlieg, Johan E T Doré, Joël Brazeilles, Rémi Quéré, Gaëlle Zhang, Chenhong Derrien, Muriel Garrett, Wendy S Kim, Jason Garault, Peggy Veiga, Patrick Levenez, Florence
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BackLink	https://www.ncbi.nlm.nih.gov/pubmed/26953599$$D View this record in MEDLINE/PubMed https://hal.science/hal-01604968$$DView record in HAL
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Copyright	The Author(s) 2016 Copyright Nature Publishing Group Sep 2016 Distributed under a Creative Commons Attribution 4.0 International License Copyright © 2016 International Society for Microbial Ecology 2016 International Society for Microbial Ecology
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Notes	ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Present address: Chr. Hansen, Boege Allé 10-12, DK-2970, Hoersholm Denmark. Co-senior authors.
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Snippet	Resident gut microbes co-exist with transient bacteria to form the gut microbiota. Despite increasing evidence suggesting a role for transient microbes on gut...
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SubjectTerms	631/326/2565/2134 Animals Bacteria Bacteria - genetics Bacteria - metabolism Biomedical and Life Sciences Cultured Milk Products - microbiology Dysbiosis - microbiology Dysbiosis - therapy Ecology Evolutionary Biology Feces - microbiology Gastrointestinal Microbiome Germ-Free Life Ingestion Lactococcus lactis Lactococcus lactis - physiology Life Sciences Male Microbial Ecology Microbial Genetics and Genomics Microbiology Original original-article Rats Sequence Analysis, DNA
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Title	Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes
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