Molecular basis of adaptation to high soil boron in wheat landraces and elite cultivars

Environmental constraints severely restrict crop yields in most production environments, and expanding the use of variation will underpin future progress in breeding. In semi-arid environments boron toxicity constrains productivity, and genetic improvement is the only effective strategy for addressi...

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Published inNature (London) Vol. 514; no. 7520; pp. 88 - 91
Main Authors Pallotta, Margaret, Schnurbusch, Thorsten, Hayes, Julie, Hay, Alison, Baumann, Ute, Paull, Jeff, Langridge, Peter, Sutton, Tim
Format Journal Article
LanguageEnglish
Published England Nature Publishing Group 02.10.2014
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Abstract Environmental constraints severely restrict crop yields in most production environments, and expanding the use of variation will underpin future progress in breeding. In semi-arid environments boron toxicity constrains productivity, and genetic improvement is the only effective strategy for addressing the problem. Wheat breeders have sought and used available genetic diversity from landraces to maintain yield in these environments; however, the identity of the genes at the major tolerance loci was unknown. Here we describe the identification of near-identical, root-specific boron transporter genes underlying the two major-effect quantitative trait loci for boron tolerance in wheat, Bo1 and Bo4 (ref. 2). We show that tolerance to a high concentration of boron is associated with multiple genomic changes including tetraploid introgression, dispersed gene duplication, and variation in gene structure and transcript level. An allelic series was identified from a panel of bread and durum wheat cultivars and landraces originating from diverse agronomic zones. Our results demonstrate that, during selection, breeders have matched functionally different boron tolerance alleles to specific environments. The characterization of boron tolerance in wheat illustrates the power of the new wheat genomic resources to define key adaptive processes that have underpinned crop improvement.
AbstractList Environmental constraints severely restrict crop yields in most production environments, and expanding the use of variation will underpin future progress in breeding. In semi-arid environments boron toxicity constrains productivity, and genetic improvement is the only effective strategy for addressing the problem. Wheat breeders have sought and used available genetic diversity from landraces to maintain yield in these environments; however, the identity of the genes at the major tolerance loci was unknown. Here we describe the identification of near-identical, root-specific boron transporter genes underlying the two major-effect quantitative trait loci for boron tolerance in wheat, Bo1 and Bo4 (ref. 2). We show that tolerance to a high concentration of boron is associated with multiple genomic changes including tetraploid introgression, dispersed gene duplication, and variation in gene structure and transcript level. An allelic series was identified from a panel of bread and durum wheat cultivars and landraces originating from diverse agronomic zones. Our results demonstrate that, during selection, breeders have matched functionally different boron tolerance alleles to specific environments. The characterization of boron tolerance in wheat illustrates the power of the new wheat genomic resources to define key adaptive processes that have underpinned crop improvement.
Environmental constraints severely restrict crop yields in most production environments, and expanding the use of variation will underpin future progress in breeding. In semi-arid environments boron toxicity constrains productivity, and genetic improvement is the only effective strategy for addressing the problem (1). Wheat breeders have sought and used available genetic diversity from landraces to maintain yield in these environments; however, the identity of the genes at the major tolerance loci was unknown. Here we describe the identification of near-identical, root-specific boron transporter genes underlying the two major-effect quantitative trait loci for boron tolerance in wheat, Bo1 and Bo4 (ref. 2). We show that tolerance to a high concentration of boron is associated with multiple genomic changes including tetraploid introgression, dispersed gene duplication, and variation in gene structure and transcript level. An allelic series was identified from a panel of bread and durum wheat cultivars and landraces originating from diverse agronomic zones. Our results demonstrate that, during selection, breeders have matched functionally different boron tolerance alleles to specific environments. The characterization of boron tolerance in wheat illustrates the power of the new wheat genomic resources to define key adaptive processes that have underpinned crop improvement.
Environmental constraints severely restrict crop yields in most production environments, and expanding the use of variation will underpin future progress in breeding. In semi-arid environments boron toxicity constrains productivity, and genetic improvement is the only effective strategy for addressing the problem1. Wheat breeders have sought and used available genetic diversity from landraces to maintain yield in these environments; however, the identity of the genes at the major tolerance loci was unknown. Here we describe the identification of near-identical, root-specific boron transporter genes underlying the two major-effect quantitative trait loci for boron tolerance in wheat, Bo1 and Bo4 (ref. 2). We show that tolerance to a high concentration of boron is associated with multiple genomic changes including tetraploid introgression, dispersed gene duplication, and variation in gene structure and transcript level. An allelic series was identified from a panel of bread and durum wheat cultivars and landraces originating from diverse agronomic zones. Our results demonstrate that, during selection, breeders have matched functionally different boron tolerance alleles to specific environments. The characterization of boron tolerance in wheat illustrates the power of the new wheat genomic resources to define key adaptive processes that have underpinned crop improvement.
Audience Academic
Author Hay, Alison
Baumann, Ute
Pallotta, Margaret
Sutton, Tim
Hayes, Julie
Langridge, Peter
Schnurbusch, Thorsten
Paull, Jeff
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  organization: 1] Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia 5064, Australia Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Genebank Department, Corrensstrasse 3, D-06466 Gatersleben, Germany
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  fullname: Hayes, Julie
  organization: Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia 5064, Australia
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  organization: Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia 5064, Australia
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  organization: Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia 5064, Australia
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  organization: School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia 5064, Australia
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  organization: Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia 5064, Australia
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  givenname: Tim
  surname: Sutton
  fullname: Sutton, Tim
  organization: Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia 5064, Australia
BackLink https://www.ncbi.nlm.nih.gov/pubmed/25043042$$D View this record in MEDLINE/PubMed
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Snippet Environmental constraints severely restrict crop yields in most production environments, and expanding the use of variation will underpin future progress in...
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SubjectTerms Adaptation, Physiological - drug effects
Adaptation, Physiological - genetics
Agricultural research
Alleles
Arid environments
Boron
Boron (Nutrient)
Boron - pharmacology
Carrier Proteins - genetics
Chromosomes
Crop improvement
Crop science
Crop yield
Cultivars
Drug Tolerance
Environmental aspects
Gene Duplication - genetics
Gene mapping
Genes, Plant - genetics
Genetic diversity
Genetic improvement
Genomics
Growth
Growth (Plants)
Health aspects
Molecular Sequence Data
Phylogeny
Plant breeding
Plant Proteins - genetics
Plant Proteins - metabolism
Plant Roots - drug effects
Plant Roots - genetics
Plant Roots - metabolism
Plant-soil relationships
Polyploidy
Quantitative Trait Loci - genetics
RNA, Messenger - analysis
RNA, Messenger - genetics
RNA, Plant - analysis
RNA, Plant - genetics
Semiarid environments
Soil - chemistry
Triticum - classification
Triticum - drug effects
Triticum - genetics
Triticum - physiology
Wheat
Title Molecular basis of adaptation to high soil boron in wheat landraces and elite cultivars
URI https://www.ncbi.nlm.nih.gov/pubmed/25043042
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