Revisiting the taxonomy of the family Circoviridae: establishment of the genus Cyclovirus and removal of the genus Gyrovirus

The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously replicating, capsid-encoding animal pathogens. Members of this family are known to cause fatal diseases in birds and pigs and have been historical...

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Bibliographic Details
Published inArchives of virology Vol. 162; no. 5; pp. 1447 - 1463
Main Authors Rosario, Karyna, Breitbart, Mya, Harrach, Balázs, Segalés, Joaquim, Delwart, Eric, Biagini, Philippe, Varsani, Arvind
Format Journal Article
LanguageEnglish
Published Vienna Springer Vienna 01.05.2017
Springer Nature B.V
Springer Verlag
Subjects
Anelloviridae
Anemia
animal viruses
Animals
Base Sequence
Biomedical and Life Sciences
Biomedicine
Birds
chemical bonding
Chicken anemia virus
Circoviridae
Circoviridae Infections - veterinary
Circoviridae Infections - virology
Circovirus
DNA, Viral - genetics
fish
genome
Genome, Viral - genetics
Genomes
guidelines
Gyrovirus - classification
Gyrovirus - genetics
Hogs
host range
hosts
Infectious Diseases
Life Sciences
Medical Microbiology
metagenomics
Microbiology and Parasitology
new genus
new species
Pathogens
polymerase chain reaction
single-stranded DNA
Taxonomy
Virology
Virology Division News
Viruses
San Francisco California
California
United States > US
Spain
Pairwise Identity
Chicken Anemia Virus
Genomic Feature
Animal Virus
ssDNA Virus
Online AccessGet full text

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Abstract The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously replicating, capsid-encoding animal pathogens. Members of this family are known to cause fatal diseases in birds and pigs and have been historically classified in one of two genera: Circovirus , which contains avian and porcine pathogens, and Gyrovirus , which includes a single species ( Chicken anemia virus ). However, over the course of the past six years, viral metagenomic approaches as well as degenerate PCR detection in unconventional hosts and environmental samples have elucidated a broader host range, including fish, a diversity of mammals, and invertebrates, for members of the family Circoviridae . Notably, these methods have uncovered a distinct group of viruses that are closely related to members of the genus Circovirus and comprise a new genus, Cyclovirus . The discovery of new viruses and a re-evaluation of genomic features that characterize members of the Circoviridae prompted a revision of the classification criteria used for this family of animal viruses. Here we provide details on an updated Circoviridae taxonomy ratified by the International Committee on the Taxonomy of Viruses in 2016, which establishes the genus Cyclovirus and reassigns the genus Gyrovirus to the family Anelloviridae, a separate lineage of animal viruses that also contains circular ssDNA genomes. In addition, we provide a new species demarcation threshold of 80% genome-wide pairwise identity for members of the family Circoviridae , based on pairwise identity distribution analysis, and list guidelines to distinguish between members of this family and other eukaryotic viruses with circular, ssDNA genomes.
AbstractList The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously replicating, capsid-encoding animal pathogens. Members of this family are known to cause fatal diseases in birds and pigs and have been historically classified in one of two genera: Circovirus , which contains avian and porcine pathogens, and Gyrovirus , which includes a single species ( Chicken anemia virus ). However, over the course of the past six years, viral metagenomic approaches as well as degenerate PCR detection in unconventional hosts and environmental samples have elucidated a broader host range, including fish, a diversity of mammals, and invertebrates, for members of the family Circoviridae . Notably, these methods have uncovered a distinct group of viruses that are closely related to members of the genus Circovirus and comprise a new genus, Cyclovirus . The discovery of new viruses and a re-evaluation of genomic features that characterize members of the Circoviridae prompted a revision of the classification criteria used for this family of animal viruses. Here we provide details on an updated Circoviridae taxonomy ratified by the International Committee on the Taxonomy of Viruses in 2016, which establishes the genus Cyclovirus and reassigns the genus Gyrovirus to the family Anelloviridae, a separate lineage of animal viruses that also contains circular ssDNA genomes. In addition, we provide a new species demarcation threshold of 80% genome-wide pairwise identity for members of the family Circoviridae , based on pairwise identity distribution analysis, and list guidelines to distinguish between members of this family and other eukaryotic viruses with circular, ssDNA genomes.
The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously replicating, capsid-encoding animal pathogens. Members of this family are known to cause fatal diseases in birds and pigs and have been historically classified in one of two genera: Circovirus, which contains avian and porcine pathogens, and Gyrovirus, which includes a single species (Chicken anemia virus). However, over the course of the past six years, viral metagenomic approaches as well as degenerate PCR detection in unconventional hosts and environmental samples have elucidated a broader host range, including fish, a diversity of mammals, and invertebrates, for members of the family Circoviridae. Notably, these methods have uncovered a distinct group of viruses that are closely related to members of the genus Circovirus and comprise a new genus, Cyclovirus. The discovery of new viruses and a re-evaluation of genomic features that characterize members of the Circoviridae prompted a revision of the classification criteria used for this family of animal viruses. Here we provide details on an updated Circoviridae taxonomy ratified by the International Committee on the Taxonomy of Viruses in 2016, which establishes the genus Cyclovirus and reassigns the genus Gyrovirus to the family Anelloviridae, a separate lineage of animal viruses that also contains circular ssDNA genomes. In addition, we provide a new species demarcation threshold of 80% genome-wide pairwise identity for members of the family Circoviridae, based on pairwise identity distribution analysis, and list guidelines to distinguish between members of this family and other eukaryotic viruses with circular, ssDNA genomes.
The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously replicating, capsid-encoding animal pathogens. Members of this family are known to cause fatal diseases in birds and pigs and have been historically classified in one of two genera: Circovirus, which contains avian and porcine pathogens, and Gyrovirus, which includes a single species (Chicken anemia virus). However, over the course of the past six years, viral metagenomic approaches as well as degenerate PCR detection in unconventional hosts and environmental samples have elucidated a broader host range, including fish, a diversity of mammals, and invertebrates, for members of the family Circoviridae. Notably, these methods have uncovered a distinct group of viruses that are closely related to members of the genus Circovirus and comprise a new genus, Cyclovirus. The discovery of new viruses and a re-evaluation of genomic features that characterize members of the Circoviridae prompted a revision of the classification criteria used for this family of animal viruses. Here we provide details on an updated Circoviridae taxonomy ratified by the International Committee on the Taxonomy of Viruses in 2016, which establishes the genus Cyclovirus and reassigns the genus Gyrovirus to the family Anelloviridae, a separate lineage of animal viruses that also contains circular ssDNA genomes. In addition, we provide a new species demarcation threshold of 80% genome-wide pairwise identity for members of the family Circoviridae, based on pairwise identity distribution analysis, and list guidelines to distinguish between members of this family and other eukaryotic viruses with circular, ssDNA genomes.The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously replicating, capsid-encoding animal pathogens. Members of this family are known to cause fatal diseases in birds and pigs and have been historically classified in one of two genera: Circovirus, which contains avian and porcine pathogens, and Gyrovirus, which includes a single species (Chicken anemia virus). However, over the course of the past six years, viral metagenomic approaches as well as degenerate PCR detection in unconventional hosts and environmental samples have elucidated a broader host range, including fish, a diversity of mammals, and invertebrates, for members of the family Circoviridae. Notably, these methods have uncovered a distinct group of viruses that are closely related to members of the genus Circovirus and comprise a new genus, Cyclovirus. The discovery of new viruses and a re-evaluation of genomic features that characterize members of the Circoviridae prompted a revision of the classification criteria used for this family of animal viruses. Here we provide details on an updated Circoviridae taxonomy ratified by the International Committee on the Taxonomy of Viruses in 2016, which establishes the genus Cyclovirus and reassigns the genus Gyrovirus to the family Anelloviridae, a separate lineage of animal viruses that also contains circular ssDNA genomes. In addition, we provide a new species demarcation threshold of 80% genome-wide pairwise identity for members of the family Circoviridae, based on pairwise identity distribution analysis, and list guidelines to distinguish between members of this family and other eukaryotic viruses with circular, ssDNA genomes.
Author Biagini, Philippe
Delwart, Eric
Rosario, Karyna
Segalés, Joaquim
Breitbart, Mya
Harrach, Balázs
Varsani, Arvind
Author_xml – sequence: 1
  givenname: Karyna
  surname: Rosario
  fullname: Rosario, Karyna
  email: krosari2@mail.usf.edu
  organization: College of Marine Science, University of South Florida
– sequence: 2
  givenname: Mya
  surname: Breitbart
  fullname: Breitbart, Mya
  organization: College of Marine Science, University of South Florida
– sequence: 3
  givenname: Balázs
  surname: Harrach
  fullname: Harrach, Balázs
  organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences
– sequence: 4
  givenname: Joaquim
  surname: Segalés
  fullname: Segalés, Joaquim
  organization: Departament de Sanitat i Anatomia Animals, Universitat Autònoma de Barcelona, UAB, Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), Campus de la Universitat Autònoma de Barcelona
– sequence: 5
  givenname: Eric
  surname: Delwart
  fullname: Delwart, Eric
  organization: Blood Systems Research Institute, Department of Laboratory Medicine, University of California, San Francisco
– sequence: 6
  givenname: Philippe
  surname: Biagini
  fullname: Biagini, Philippe
  organization: Viral Emergence and Co-evolution Unit, ADES, UMR 7268, Aix-Marseille University, CNRS, EFS
– sequence: 7
  givenname: Arvind
  orcidid: 0000-0003-4111-2415
  surname: Varsani
  fullname: Varsani, Arvind
  email: arvind.varsani@asu.edu
  organization: The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life sciences, Arizona State University, Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town
BackLink https://www.ncbi.nlm.nih.gov/pubmed/28155197$$D View this record in MEDLINE/PubMed
https://hal.science/hal-01477139$$DView record in HAL
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Chicken Anemia Virus
Genomic Feature
Animal Virus
ssDNA Virus
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SSID ssj0003035
Score 2.6116695
Snippet The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously...
The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously...
SourceID hal
proquest
pubmed
crossref
springer
SourceType Open Access Repository
Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 1447
SubjectTerms Anelloviridae
Anemia
animal viruses
Animals
Base Sequence
Biomedical and Life Sciences
Biomedicine
Birds
chemical bonding
Chicken anemia virus
Circoviridae
Circoviridae Infections - veterinary
Circoviridae Infections - virology
Circovirus
DNA, Viral - genetics
fish
genome
Genome, Viral - genetics
Genomes
guidelines
Gyrovirus - classification
Gyrovirus - genetics
Hogs
host range
hosts
Infectious Diseases
Life Sciences
Medical Microbiology
metagenomics
Microbiology and Parasitology
new genus
new species
Pathogens
polymerase chain reaction
single-stranded DNA
Taxonomy
Virology
Virology Division News
Viruses
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Title Revisiting the taxonomy of the family Circoviridae: establishment of the genus Cyclovirus and removal of the genus Gyrovirus
URI https://link.springer.com/article/10.1007/s00705-017-3247-y
https://www.ncbi.nlm.nih.gov/pubmed/28155197
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https://www.proquest.com/docview/1865520470
https://www.proquest.com/docview/1891885770
https://www.proquest.com/docview/2000531927
https://hal.science/hal-01477139
Volume 162
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