Soil Microbial Community Structure in an Asian Dust Source Region (Loess Plateau)

The bacterial community structure in four geographically isolated arid regions on the Loess plateau, China, a source of Asian dust, was investigated using a 16S rRNA gene. Denaturing gradient gel electrophoresis and sequencing demonstrated that community diversity in the Loess plateau was low, and a...

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Published inMicrobes and Environments Vol. 25; no. 1; pp. 53 - 57
Main Authors Kenzaka, Takehiko, Sueyoshi, Akio, Baba, Takashi, Li, Pinfang, Tani, Katsuji, Yamaguchi, Nobuyasu, Nasu, Masao
Format Journal Article
LanguageEnglish
Published Japan Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles 2010
Japan Science and Technology Agency
Subjects
arid region
Asian dust
Bacteria - classification
Bacteria - genetics
Bacteria - isolation & purification
Biodiversity
China
Cluster Analysis
community structure
Denaturing Gradient Gel Electrophoresis
diversity
DNA, Bacterial - chemistry
DNA, Bacterial - genetics
DNA, Ribosomal - chemistry
DNA, Ribosomal - genetics
Dust
Molecular Sequence Data
Phylogeny
RNA, Ribosomal, 16S - genetics
rRNA gene
Sequence Analysis, DNA
Soil Microbiology
China
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Abstract The bacterial community structure in four geographically isolated arid regions on the Loess plateau, China, a source of Asian dust, was investigated using a 16S rRNA gene. Denaturing gradient gel electrophoresis and sequencing demonstrated that community diversity in the Loess plateau was low, and a common Alphaproteobacteria phylotype was identified. Phylogenetic analyses of arid soils revealed that most phylotypes had low similarity with known strains in various phyla, suggesting that these regions contain phylogenetically divergent and unknown bacteria.
AbstractList The bacterial community structure in four geographically isolated arid regions on the Loess plateau, China, a source of Asian dust, was investigated using a 16S rRNA gene. Denaturing gradient gel electrophoresis and sequencing demonstrated that community diversity in the Loess plateau was low, and a common Alphaproteobacteria phylotype was identified. Phylogenetic analyses of arid soils revealed that most phylotypes had low similarity with known strains in various phyla, suggesting that these regions contain phylogenetically divergent and unknown bacteria.
Author Sueyoshi, Akio
Li, Pinfang
Nasu, Masao
Yamaguchi, Nobuyasu
Kenzaka, Takehiko
Baba, Takashi
Tani, Katsuji
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  fullname: Li, Pinfang
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  fullname: Tani, Katsuji
  organization: Graduate School of Pharmaceutical Sciences, Osaka University
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  fullname: Yamaguchi, Nobuyasu
  organization: Graduate School of Pharmaceutical Sciences, Osaka University
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  fullname: Nasu, Masao
  organization: Graduate School of Pharmaceutical Sciences, Osaka University
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Snippet The bacterial community structure in four geographically isolated arid regions on the Loess plateau, China, a source of Asian dust, was investigated using a...
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StartPage 53
SubjectTerms arid region
Asian dust
Bacteria - classification
Bacteria - genetics
Bacteria - isolation & purification
Biodiversity
China
Cluster Analysis
community structure
Denaturing Gradient Gel Electrophoresis
diversity
DNA, Bacterial - chemistry
DNA, Bacterial - genetics
DNA, Ribosomal - chemistry
DNA, Ribosomal - genetics
Dust
Molecular Sequence Data
Phylogeny
RNA, Ribosomal, 16S - genetics
rRNA gene
Sequence Analysis, DNA
Soil Microbiology
Title Soil Microbial Community Structure in an Asian Dust Source Region (Loess Plateau)
URI https://www.jstage.jst.go.jp/article/jsme2/25/1/25_ME09164/_article/-char/en
https://www.ncbi.nlm.nih.gov/pubmed/21576854
https://www.proquest.com/docview/1467742924/abstract/
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