Patterns in soil microbial diversity across Europe

Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly understood, especially at large scales. We analysed microbial biodiversity metrics and distribution of potential functional groups along a gradient of increasi...

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Published inNature communications Vol. 14; no. 1; pp. 3311 - 21
Main Authors Labouyrie, Maëva, Ballabio, Cristiano, Romero, Ferran, Panagos, Panos, Jones, Arwyn, Schmid, Marc W., Mikryukov, Vladimir, Dulya, Olesya, Tedersoo, Leho, Bahram, Mohammad, Lugato, Emanuele, van der Heijden, Marcel G. A., Orgiazzi, Alberto
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 08.06.2023
Nature Publishing Group
Nature Portfolio
Subjects
45/23
49/23
631/158/670
631/158/855
704/158/670
704/158/855
Agricultural land
Bacteria
Bacteria - genetics
Biodiversity
Community composition
Ecology
Ekologi
Environmental policy
Europe
Functional groups
Fungi
Fungi - genetics
Grasslands
Humanities and Social Sciences
Land use
Microbial activity
Microbiology
Microbiomes
Microbiota
Microorganisms
Mikrobiologi
multidisciplinary
Pathogens
Perturbation
Science
Science (multidisciplinary)
Soil
Soil Microbiology
Soil properties
Soils
Symbionts
Vegetation cover
Woodlands
Europe
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Abstract Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly understood, especially at large scales. We analysed microbial biodiversity metrics and distribution of potential functional groups along a gradient of increasing land-use perturbation, detecting over 79,000 bacterial and 25,000 fungal OTUs in 715 sites across 24 European countries. We found the lowest bacterial and fungal diversity in less-disturbed environments (woodlands) compared to grasslands and highly-disturbed environments (croplands). Highly-disturbed environments contain significantly more bacterial chemoheterotrophs, harbour a higher proportion of fungal plant pathogens and saprotrophs, and have less beneficial fungal plant symbionts compared to woodlands and extensively-managed grasslands. Spatial patterns of microbial communities and predicted functions are best explained when interactions among the major determinants (vegetation cover, climate, soil properties) are considered. We propose guidelines for environmental policy actions and argue that taxonomical and functional diversity should be considered simultaneously for monitoring purposes. “Factors influencing soil microbiota functioning remain understudied. Here, the authors describe bacterial and fungal diversity across Europe and along a gradient of land-use perturbation, observing that the occurrence of pathogens, symbionts and saprotrophs varied among cropland, woodland and grassland.”
AbstractList Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly understood, especially at large scales. We analysed microbial biodiversity metrics and distribution of potential functional groups along a gradient of increasing land-use perturbation, detecting over 79,000 bacterial and 25,000 fungal OTUs in 715 sites across 24 European countries. We found the lowest bacterial and fungal diversity in less-disturbed environments (woodlands) compared to grasslands and highly-disturbed environments (croplands). Highly-disturbed environments contain significantly more bacterial chemoheterotrophs, harbour a higher proportion of fungal plant pathogens and saprotrophs, and have less beneficial fungal plant symbionts compared to woodlands and extensively-managed grasslands. Spatial patterns of microbial communities and predicted functions are best explained when interactions among the major determinants (vegetation cover, climate, soil properties) are considered. We propose guidelines for environmental policy actions and argue that taxonomical and functional diversity should be considered simultaneously for monitoring purposes.Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly understood, especially at large scales. We analysed microbial biodiversity metrics and distribution of potential functional groups along a gradient of increasing land-use perturbation, detecting over 79,000 bacterial and 25,000 fungal OTUs in 715 sites across 24 European countries. We found the lowest bacterial and fungal diversity in less-disturbed environments (woodlands) compared to grasslands and highly-disturbed environments (croplands). Highly-disturbed environments contain significantly more bacterial chemoheterotrophs, harbour a higher proportion of fungal plant pathogens and saprotrophs, and have less beneficial fungal plant symbionts compared to woodlands and extensively-managed grasslands. Spatial patterns of microbial communities and predicted functions are best explained when interactions among the major determinants (vegetation cover, climate, soil properties) are considered. We propose guidelines for environmental policy actions and argue that taxonomical and functional diversity should be considered simultaneously for monitoring purposes.
Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly understood, especially at large scales. We analysed microbial biodiversity metrics and distribution of potential functional groups along a gradient of increasing land-use perturbation, detecting over 79,000 bacterial and 25,000 fungal OTUs in 715 sites across 24 European countries. We found the lowest bacterial and fungal diversity in less-disturbed environments (woodlands) compared to grasslands and highly-disturbed environments (croplands). Highly-disturbed environments contain significantly more bacterial chemoheterotrophs, harbour a higher proportion of fungal plant pathogens and saprotrophs, and have less beneficial fungal plant symbionts compared to woodlands and extensively-managed grasslands. Spatial patterns of microbial communities and predicted functions are best explained when interactions among the major determinants (vegetation cover, climate, soil properties) are considered. We propose guidelines for environmental policy actions and argue that taxonomical and functional diversity should be considered simultaneously for monitoring purposes. “Factors influencing soil microbiota functioning remain understudied. Here, the authors describe bacterial and fungal diversity across Europe and along a gradient of land-use perturbation, observing that the occurrence of pathogens, symbionts and saprotrophs varied among cropland, woodland and grassland.”
Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly understood, especially at large scales. We analysed microbial biodiversity metrics and distribution of potential functional groups along a gradient of increasing land-use perturbation, detecting over 79,000 bacterial and 25,000 fungal OTUs in 715 sites across 24 European countries. We found the lowest bacterial and fungal diversity in less-disturbed environments (woodlands) compared to grasslands and highly-disturbed environments (croplands). Highly-disturbed environments contain significantly more bacterial chemoheterotrophs, harbour a higher proportion of fungal plant pathogens and saprotrophs, and have less beneficial fungal plant symbionts compared to woodlands and extensively-managed grasslands. Spatial patterns of microbial communities and predicted functions are best explained when interactions among the major determinants (vegetation cover, climate, soil properties) are considered. We propose guidelines for environmental policy actions and argue that taxonomical and functional diversity should be considered simultaneously for monitoring purposes.“Factors influencing soil microbiota functioning remain understudied. Here, the authors describe bacterial and fungal diversity across Europe and along a gradient of land-use perturbation, observing that the occurrence of pathogens, symbionts and saprotrophs varied among cropland, woodland and grassland.”
Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly understood, especially at large scales. We analysed microbial biodiversity metrics and distribution of potential functional groups along a gradient of increasing land-use perturbation, detecting over 79,000 bacterial and 25,000 fungal OTUs in 715 sites across 24 European countries. We found the lowest bacterial and fungal diversity in less-disturbed environments (woodlands) compared to grasslands and highly-disturbed environments (croplands). Highly-disturbed environments contain significantly more bacterial chemoheterotrophs, harbour a higher proportion of fungal plant pathogens and saprotrophs, and have less beneficial fungal plant symbionts compared to woodlands and extensively-managed grasslands. Spatial patterns of microbial communities and predicted functions are best explained when interactions among the major determinants (vegetation cover, climate, soil properties) are considered. We propose guidelines for environmental policy actions and argue that taxonomical and functional diversity should be considered simultaneously for monitoring purposes.
Abstract Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly understood, especially at large scales. We analysed microbial biodiversity metrics and distribution of potential functional groups along a gradient of increasing land-use perturbation, detecting over 79,000 bacterial and 25,000 fungal OTUs in 715 sites across 24 European countries. We found the lowest bacterial and fungal diversity in less-disturbed environments (woodlands) compared to grasslands and highly-disturbed environments (croplands). Highly-disturbed environments contain significantly more bacterial chemoheterotrophs, harbour a higher proportion of fungal plant pathogens and saprotrophs, and have less beneficial fungal plant symbionts compared to woodlands and extensively-managed grasslands. Spatial patterns of microbial communities and predicted functions are best explained when interactions among the major determinants (vegetation cover, climate, soil properties) are considered. We propose guidelines for environmental policy actions and argue that taxonomical and functional diversity should be considered simultaneously for monitoring purposes.
ArticleNumber 3311
Author Labouyrie, Maëva
Dulya, Olesya
Schmid, Marc W.
Mikryukov, Vladimir
van der Heijden, Marcel G. A.
Panagos, Panos
Orgiazzi, Alberto
Bahram, Mohammad
Ballabio, Cristiano
Tedersoo, Leho
Romero, Ferran
Jones, Arwyn
Lugato, Emanuele
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  surname: Mikryukov
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– sequence: 8
  givenname: Olesya
  surname: Dulya
  fullname: Dulya, Olesya
  organization: Mycology and Microbiology Center, University of Tartu, Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/37291086$$D View this record in MEDLINE/PubMed
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ContentType Journal Article
Copyright the European Union 2023. corrected publication 2023
2023. the European Union.
the European Union 2023. corrected publication 2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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Snippet Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly understood,...
Abstract Factors driving microbial community composition and diversity are well established but the relationship with microbial functioning is poorly...
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Agricultural land
Bacteria
Bacteria - genetics
Biodiversity
Community composition
Ecology
Ekologi
Environmental policy
Europe
Functional groups
Fungi
Fungi - genetics
Grasslands
Humanities and Social Sciences
Land use
Microbial activity
Microbiology
Microbiomes
Microbiota
Microorganisms
Mikrobiologi
multidisciplinary
Pathogens
Perturbation
Science
Science (multidisciplinary)
Soil
Soil Microbiology
Soil properties
Soils
Symbionts
Vegetation cover
Woodlands
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Title Patterns in soil microbial diversity across Europe
URI https://link.springer.com/article/10.1038/s41467-023-37937-4
https://www.ncbi.nlm.nih.gov/pubmed/37291086
https://www.proquest.com/docview/2825537613
https://www.proquest.com/docview/2824694125
https://pubmed.ncbi.nlm.nih.gov/PMC10250377
https://res.slu.se/id/publ/123780
https://doaj.org/article/9d277923ae524976898ebeaa93d464a7
Volume 14
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