A jumbo phage infecting the phytopathogen Ralstonia solanacearum defines a new lineage of the Myoviridae family

Abstract ϕRSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum . In this study, we investigate the infection cycle of ϕRSL1 and provide a genomic, proteomic and transcriptomic view of this phage. Its 231-kbp genome sequence showed many genes la...

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Published inVirology (New York, N.Y.) Vol. 398; no. 1; pp. 135 - 147
Main Authors Yamada, Takashi, Satoh, Souichi, Ishikawa, Hiroki, Fujiwara, Akiko, Kawasaki, Takeru, Fujie, Makoto, Ogata, Hiroyuki
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 01.03.2010
Subjects
Amino Acid Sequence
bacteriophages
carbohydrate metabolism
DNA replication
DNA Replication - physiology
DNA, Viral - genetics
DNA, Viral - physiology
DNA-directed DNA polymerase
DNA-Directed DNA Polymerase - genetics
DNA-Directed DNA Polymerase - metabolism
Gene expression
gene expression regulation
Gene Expression Regulation, Viral
Genome, Viral
Genomic analysis
genomics
homospermidine synthase
Infectious Disease
Jumbo bacteriophage
Molecular Sequence Data
Myoviridae
Myoviridae - classification
Myoviridae - isolation & purification
Myovirus
Oligonucleotide Array Sequence Analysis
open reading frames
pathogenesis
Phylogeny
plant pathogenic bacteria
Proteomic analysis
proteomics
Ralstonia solanacearum
Ralstonia solanacearum - virology
transcription (genetics)
Transcription, Genetic
transcriptomics
Proteomic analysis
Genomic analysis
Ralstonia solanacearum
Gene expression
Jumbo bacteriophage
Online AccessGet full text

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Abstract Abstract ϕRSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum . In this study, we investigate the infection cycle of ϕRSL1 and provide a genomic, proteomic and transcriptomic view of this phage. Its 231-kbp genome sequence showed many genes lacking detectable homologs in the current databases and was vastly different from previously studied phage genomes. In addition to these orphan proteins, ϕRSL1 was found to encode several enzymes that are unique among known viruses. These include enzymes for the salvage pathway of NAD+ and for the biosynthetic pathways of lipid, carbohydrate and homospermidine. A chitinase-like protein was found to be a potential lysis enzyme. Our proteomics analysis suggests that ϕRSL1 virions contain at least 25 distinct proteins. We identified six of them including a tail sheath protein and a topoisomerase IB by N-terminal sequencing. Based on a DNA microarray analysis, we identified two transcription patterns.
AbstractList [phi]RSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum. In this study, we investigate the infection cycle of [phi]RSL1 and provide a genomic, proteomic and transcriptomic view of this phage. Its 231-kbp genome sequence showed many genes lacking detectable homologs in the current databases and was vastly different from previously studied phage genomes. In addition to these orphan proteins, [phi]RSL1 was found to encode several enzymes that are unique among known viruses. These include enzymes for the salvage pathway of NAD super(+) and for the biosynthetic pathways of lipid, carbohydrate and homospermidine. A chitinase-like protein was found to be a potential lysis enzyme. Our proteomics analysis suggests that [phi]RSL1 virions contain at least 25 distinct proteins. We identified six of them including a tail sheath protein and a topoisomerase IB by N-terminal sequencing. Based on a DNA microarray analysis, we identified two transcription patterns.
phiRSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum. In this study, we investigate the infection cycle of varphiRSL1 and provide a genomic, proteomic and transcriptomic view of this phage. Its 231-kbp genome sequence showed many genes lacking detectable homologs in the current databases and was vastly different from previously studied phage genomes. In addition to these orphan proteins, varphiRSL1 was found to encode several enzymes that are unique among known viruses. These include enzymes for the salvage pathway of NAD(+) and for the biosynthetic pathways of lipid, carbohydrate and homospermidine. A chitinase-like protein was found to be a potential lysis enzyme. Our proteomics analysis suggests that varphiRSL1 virions contain at least 25 distinct proteins. We identified six of them including a tail sheath protein and a topoisomerase IB by N-terminal sequencing. Based on a DNA microarray analysis, we identified two transcription patterns.
ϕRSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum. In this study, we investigate the infection cycle of ϕRSL1 and provide a genomic, proteomic and transcriptomic view of this phage. Its 231-kbp genome sequence showed many genes lacking detectable homologs in the current databases and was vastly different from previously studied phage genomes. In addition to these orphan proteins, ϕRSL1 was found to encode several enzymes that are unique among known viruses. These include enzymes for the salvage pathway of NAD + and for the biosynthetic pathways of lipid, carbohydrate and homospermidine. A chitinase-like protein was found to be a potential lysis enzyme. Our proteomics analysis suggests that ϕRSL1 virions contain at least 25 distinct proteins. We identified six of them including a tail sheath protein and a topoisomerase IB by N-terminal sequencing. Based on a DNA microarray analysis, we identified two transcription patterns.
Abstract ϕRSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum . In this study, we investigate the infection cycle of ϕRSL1 and provide a genomic, proteomic and transcriptomic view of this phage. Its 231-kbp genome sequence showed many genes lacking detectable homologs in the current databases and was vastly different from previously studied phage genomes. In addition to these orphan proteins, ϕRSL1 was found to encode several enzymes that are unique among known viruses. These include enzymes for the salvage pathway of NAD+ and for the biosynthetic pathways of lipid, carbohydrate and homospermidine. A chitinase-like protein was found to be a potential lysis enzyme. Our proteomics analysis suggests that ϕRSL1 virions contain at least 25 distinct proteins. We identified six of them including a tail sheath protein and a topoisomerase IB by N-terminal sequencing. Based on a DNA microarray analysis, we identified two transcription patterns.
Author Fujie, Makoto
Fujiwara, Akiko
Yamada, Takashi
Ishikawa, Hiroki
Satoh, Souichi
Ogata, Hiroyuki
Kawasaki, Takeru
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  fullname: Kawasaki, Takeru
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  fullname: Fujie, Makoto
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  fullname: Ogata, Hiroyuki
BackLink https://www.ncbi.nlm.nih.gov/pubmed/20034649$$D View this record in MEDLINE/PubMed
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Keywords Proteomic analysis
Genomic analysis
Ralstonia solanacearum
Gene expression
Jumbo bacteriophage
Language English
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Snippet Abstract ϕRSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum . In this study, we investigate the...
ϕRSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum. In this study, we investigate the infection...
phiRSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum. In this study, we investigate the infection...
[phi]RSL1 is a jumbo myovirus stably and lytically infecting the phytopathogenic bacterium Ralstonia solanacearum. In this study, we investigate the infection...
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SubjectTerms Amino Acid Sequence
bacteriophages
carbohydrate metabolism
DNA replication
DNA Replication - physiology
DNA, Viral - genetics
DNA, Viral - physiology
DNA-directed DNA polymerase
DNA-Directed DNA Polymerase - genetics
DNA-Directed DNA Polymerase - metabolism
Gene expression
gene expression regulation
Gene Expression Regulation, Viral
Genome, Viral
Genomic analysis
genomics
homospermidine synthase
Infectious Disease
Jumbo bacteriophage
Molecular Sequence Data
Myoviridae
Myoviridae - classification
Myoviridae - isolation & purification
Myovirus
Oligonucleotide Array Sequence Analysis
open reading frames
pathogenesis
Phylogeny
plant pathogenic bacteria
Proteomic analysis
proteomics
Ralstonia solanacearum
Ralstonia solanacearum - virology
transcription (genetics)
Transcription, Genetic
transcriptomics
Title A jumbo phage infecting the phytopathogen Ralstonia solanacearum defines a new lineage of the Myoviridae family
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https://dx.doi.org/10.1016/j.virol.2009.11.043
https://www.ncbi.nlm.nih.gov/pubmed/20034649
https://search.proquest.com/docview/733710950
https://search.proquest.com/docview/807260908
Volume 398
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