Innovation and constraint leading to complex multicellularity in the Ascomycota

The advent of complex multicellularity (CM) was a pivotal event in the evolution of animals, plants and fungi. In the fungal Ascomycota, CM is based on hyphal filaments and arose in the Pezizomycotina. The genus Neolecta defines an enigma: phylogenetically placed in a related group containing mostly...

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Published inNature communications Vol. 8; no. 1; p. 14444
Main Authors Nguyen, Tu Anh, Cissé, Ousmane H., Yun Wong, Jie, Zheng, Peng, Hewitt, David, Nowrousian, Minou, Stajich, Jason E., Jedd, Gregory
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Abstract The advent of complex multicellularity (CM) was a pivotal event in the evolution of animals, plants and fungi. In the fungal Ascomycota, CM is based on hyphal filaments and arose in the Pezizomycotina. The genus Neolecta defines an enigma: phylogenetically placed in a related group containing mostly yeasts, Neolecta nevertheless possesses Pezizomycotina-like CM. Here we sequence the Neolecta irregularis genome and identify CM-associated functions by searching for genes conserved in Neolecta and the Pezizomycotina, which are absent or divergent in budding or fission yeasts. This group of 1,050 genes is enriched for functions related to diverse endomembrane systems and their organization. Remarkably, most show evidence for divergence in both yeasts. Using functional genomics, we identify new genes involved in fungal complexification. Together, these data show that rudimentary multicellularity is deeply rooted in the Ascomycota. Extensive parallel gene divergence during simplification and constraint leading to CM suggest a deterministic process where shared modes of cellular organization select for similarly configured organelle- and transport-related machineries. The fungal Ascomycota provide a model phylum to investigate the evolution of complex multicellularity. Here, the authors combine genome sequencing with comparative and functional genomics to identify diverse endomembrane related machineries associated with the gain and loss of fungal complexity.
AbstractList The advent of complex multicellularity (CM) was a pivotal event in the evolution of animals, plants and fungi. In the fungal Ascomycota, CM is based on hyphal filaments and arose in the Pezizomycotina. The genus Neolecta defines an enigma: phylogenetically placed in a related group containing mostly yeasts, Neolecta nevertheless possesses Pezizomycotina-like CM. Here we sequence the Neolecta irregularis genome and identify CM-associated functions by searching for genes conserved in Neolecta and the Pezizomycotina, which are absent or divergent in budding or fission yeasts. This group of 1,050 genes is enriched for functions related to diverse endomembrane systems and their organization. Remarkably, most show evidence for divergence in both yeasts. Using functional genomics, we identify new genes involved in fungal complexification. Together, these data show that rudimentary multicellularity is deeply rooted in the Ascomycota. Extensive parallel gene divergence during simplification and constraint leading to CM suggest a deterministic process where shared modes of cellular organization select for similarly configured organelle- and transport-related machineries.
The advent of complex multicellularity (CM) was a pivotal event in the evolution of animals, plants and fungi. In the fungal Ascomycota, CM is based on hyphal filaments and arose in the Pezizomycotina. The genus Neolecta defines an enigma: phylogenetically placed in a related group containing mostly yeasts, Neolecta nevertheless possesses Pezizomycotina-like CM. Here we sequence the Neolecta irregularis genome and identify CM-associated functions by searching for genes conserved in Neolecta and the Pezizomycotina, which are absent or divergent in budding or fission yeasts. This group of 1,050 genes is enriched for functions related to diverse endomembrane systems and their organization. Remarkably, most show evidence for divergence in both yeasts. Using functional genomics, we identify new genes involved in fungal complexification. Together, these data show that rudimentary multicellularity is deeply rooted in the Ascomycota. Extensive parallel gene divergence during simplification and constraint leading to CM suggest a deterministic process where shared modes of cellular organization select for similarly configured organelle- and transport-related machineries.
The fungal Ascomycota provide a model phylum to investigate the evolution of complex multicellularity. Here, the authors combine genome sequencing with comparative and functional genomics to identify diverse endomembrane related machineries associated with the gain and loss of fungal complexity.
The advent of complex multicellularity (CM) was a pivotal event in the evolution of animals, plants and fungi. In the fungal Ascomycota, CM is based on hyphal filaments and arose in the Pezizomycotina. The genus Neolecta defines an enigma: phylogenetically placed in a related group containing mostly yeasts, Neolecta nevertheless possesses Pezizomycotina-like CM. Here we sequence the Neolecta irregularis genome and identify CM-associated functions by searching for genes conserved in Neolecta and the Pezizomycotina, which are absent or divergent in budding or fission yeasts. This group of 1,050 genes is enriched for functions related to diverse endomembrane systems and their organization. Remarkably, most show evidence for divergence in both yeasts. Using functional genomics, we identify new genes involved in fungal complexification. Together, these data show that rudimentary multicellularity is deeply rooted in the Ascomycota. Extensive parallel gene divergence during simplification and constraint leading to CM suggest a deterministic process where shared modes of cellular organization select for similarly configured organelle- and transport-related machineries. The fungal Ascomycota provide a model phylum to investigate the evolution of complex multicellularity. Here, the authors combine genome sequencing with comparative and functional genomics to identify diverse endomembrane related machineries associated with the gain and loss of fungal complexity.
ArticleNumber 14444
Author Nguyen, Tu Anh
Yun Wong, Jie
Hewitt, David
Nowrousian, Minou
Cissé, Ousmane H.
Stajich, Jason E.
Jedd, Gregory
Zheng, Peng
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  surname: Cissé
  fullname: Cissé, Ousmane H.
  organization: Department of Plant Pathology and Microbiology, Institute for Integrative Genome Biology, University of California-Riverside, Present address: Critical Care Medicine Department, National Institutes of Health, Bethesda, Maryland 20814, USA
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  givenname: Jie
  surname: Yun Wong
  fullname: Yun Wong, Jie
  organization: Temasek Life Sciences Laboratory and Department of Biological Sciences, The National University of Singapore
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  givenname: Peng
  surname: Zheng
  fullname: Zheng, Peng
  organization: Temasek Life Sciences Laboratory and Department of Biological Sciences, The National University of Singapore
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  fullname: Jedd, Gregory
  email: gregory@tll.org.sg
  organization: Temasek Life Sciences Laboratory and Department of Biological Sciences, The National University of Singapore
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These authors contributed equally to this work
Present address: Critical Care Medicine Department, National Institutes of Health, Bethesda, Maryland 20814, USA
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Snippet The advent of complex multicellularity (CM) was a pivotal event in the evolution of animals, plants and fungi. In the fungal Ascomycota, CM is based on hyphal...
The fungal Ascomycota provide a model phylum to investigate the evolution of complex multicellularity. Here, the authors combine genome sequencing with...
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StartPage 14444
SubjectTerms 13/1
13/44
14/19
14/35
631/181/2474
631/208/191
631/208/212/748
631/326/193/2541
Ascomycota - cytology
Ascomycota - genetics
Biodiversity
Biological Transport - physiology
Computational Biology
DNA, Fungal - genetics
Evolution
Evolution, Molecular
Fungal Proteins - physiology
Fungi
Genes
Genome, Fungal - physiology
Genomes
Genomics
Humanities and Social Sciences
Innovations
multidisciplinary
Phylogeny
Science
Science (multidisciplinary)
Sequence Alignment
Whole Genome Sequencing
Yeast
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Title Innovation and constraint leading to complex multicellularity in the Ascomycota
URI https://link.springer.com/article/10.1038/ncomms14444
https://www.ncbi.nlm.nih.gov/pubmed/28176784
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https://pubmed.ncbi.nlm.nih.gov/PMC5309816
https://doaj.org/article/56a0e240e3ca4e6d8b1df37baede46de
Volume 8
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