Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution

Comparative analysis of the expanding genomic resources for scleractinian corals may provide insights into the evolution of these organisms, with implications for their continued persistence under global climate change. Here, we sequenced and annotated the genome of Pocillopora damicornis , one of t...

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Published inScientific reports Vol. 8; no. 1; pp. 16134 - 10
Main Authors Cunning, R., Bay, R. A., Gillette, P., Baker, A. C., Traylor-Knowles, N.
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 31.10.2018
Nature Publishing Group
Subjects
45
45/23
631/181/2474
631/208/212/748
Adaptation
Cellular stress response
Climate change
Comparative analysis
Corals
Environmental stress
Evolution
Evolutionary genetics
Genes
Genomes
Global climate
Humanities and Social Sciences
Immune system
multidisciplinary
Orthology
Pocillopora damicornis
Science
Science (multidisciplinary)
Symbiosis
Basic Housekeeping Functions
Gene Family Size
Damicornis
Scleractinia
Pocillopora
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Abstract Comparative analysis of the expanding genomic resources for scleractinian corals may provide insights into the evolution of these organisms, with implications for their continued persistence under global climate change. Here, we sequenced and annotated the genome of Pocillopora damicornis , one of the most abundant and widespread corals in the world. We compared this genome, based on protein-coding gene orthology, with other publicly available coral genomes (Cnidaria, Anthozoa, Scleractinia), as well as genomes from other anthozoan groups (Actiniaria, Corallimorpharia), and two basal metazoan outgroup phlya (Porifera, Ctenophora). We found that 46.6% of P. damicornis genes had orthologs in all other scleractinians, defining a coral ‘core’ genome enriched in basic housekeeping functions. Of these core genes, 3.7% were unique to scleractinians and were enriched in immune functionality, suggesting an important role of the immune system in coral evolution. Genes occurring only in P. damicornis were enriched in cellular signaling and stress response pathways, and we found similar immune-related gene family expansions in each coral species, indicating that immune system diversification may be a prominent feature of scleractinian coral evolution at multiple taxonomic levels. Diversification of the immune gene repertoire may underlie scleractinian adaptations to symbiosis, pathogen interactions, and environmental stress.
AbstractList Comparative analysis of the expanding genomic resources for scleractinian corals may provide insights into the evolution of these organisms, with implications for their continued persistence under global climate change. Here, we sequenced and annotated the genome of Pocillopora damicornis , one of the most abundant and widespread corals in the world. We compared this genome, based on protein-coding gene orthology, with other publicly available coral genomes (Cnidaria, Anthozoa, Scleractinia), as well as genomes from other anthozoan groups (Actiniaria, Corallimorpharia), and two basal metazoan outgroup phlya (Porifera, Ctenophora). We found that 46.6% of P. damicornis genes had orthologs in all other scleractinians, defining a coral ‘core’ genome enriched in basic housekeeping functions. Of these core genes, 3.7% were unique to scleractinians and were enriched in immune functionality, suggesting an important role of the immune system in coral evolution. Genes occurring only in P. damicornis were enriched in cellular signaling and stress response pathways, and we found similar immune-related gene family expansions in each coral species, indicating that immune system diversification may be a prominent feature of scleractinian coral evolution at multiple taxonomic levels. Diversification of the immune gene repertoire may underlie scleractinian adaptations to symbiosis, pathogen interactions, and environmental stress.
Abstract Comparative analysis of the expanding genomic resources for scleractinian corals may provide insights into the evolution of these organisms, with implications for their continued persistence under global climate change. Here, we sequenced and annotated the genome of Pocillopora damicornis , one of the most abundant and widespread corals in the world. We compared this genome, based on protein-coding gene orthology, with other publicly available coral genomes (Cnidaria, Anthozoa, Scleractinia), as well as genomes from other anthozoan groups (Actiniaria, Corallimorpharia), and two basal metazoan outgroup phlya (Porifera, Ctenophora). We found that 46.6% of P. damicornis genes had orthologs in all other scleractinians, defining a coral ‘core’ genome enriched in basic housekeeping functions. Of these core genes, 3.7% were unique to scleractinians and were enriched in immune functionality, suggesting an important role of the immune system in coral evolution. Genes occurring only in P. damicornis were enriched in cellular signaling and stress response pathways, and we found similar immune-related gene family expansions in each coral species, indicating that immune system diversification may be a prominent feature of scleractinian coral evolution at multiple taxonomic levels. Diversification of the immune gene repertoire may underlie scleractinian adaptations to symbiosis, pathogen interactions, and environmental stress.
Comparative analysis of the expanding genomic resources for scleractinian corals may provide insights into the evolution of these organisms, with implications for their continued persistence under global climate change. Here, we sequenced and annotated the genome of Pocillopora damicornis, one of the most abundant and widespread corals in the world. We compared this genome, based on protein-coding gene orthology, with other publicly available coral genomes (Cnidaria, Anthozoa, Scleractinia), as well as genomes from other anthozoan groups (Actiniaria, Corallimorpharia), and two basal metazoan outgroup phlya (Porifera, Ctenophora). We found that 46.6% of P. damicornis genes had orthologs in all other scleractinians, defining a coral 'core' genome enriched in basic housekeeping functions. Of these core genes, 3.7% were unique to scleractinians and were enriched in immune functionality, suggesting an important role of the immune system in coral evolution. Genes occurring only in P. damicornis were enriched in cellular signaling and stress response pathways, and we found similar immune-related gene family expansions in each coral species, indicating that immune system diversification may be a prominent feature of scleractinian coral evolution at multiple taxonomic levels. Diversification of the immune gene repertoire may underlie scleractinian adaptations to symbiosis, pathogen interactions, and environmental stress.
ArticleNumber 16134
Author Gillette, P.
Traylor-Knowles, N.
Bay, R. A.
Baker, A. C.
Cunning, R.
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2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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Issue 1
Keywords Basic Housekeeping Functions
Gene Family Size
Damicornis
Scleractinia
Pocillopora
Language English
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SSID ssj0000529419
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Snippet Comparative analysis of the expanding genomic resources for scleractinian corals may provide insights into the evolution of these organisms, with implications...
Abstract Comparative analysis of the expanding genomic resources for scleractinian corals may provide insights into the evolution of these organisms, with...
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45/23
631/181/2474
631/208/212/748
Adaptation
Cellular stress response
Climate change
Comparative analysis
Corals
Environmental stress
Evolution
Evolutionary genetics
Genes
Genomes
Global climate
Humanities and Social Sciences
Immune system
multidisciplinary
Orthology
Pocillopora damicornis
Science
Science (multidisciplinary)
Symbiosis
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Title Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution
URI https://link.springer.com/article/10.1038/s41598-018-34459-8
https://www.ncbi.nlm.nih.gov/pubmed/30382153
https://www.proquest.com/docview/2127646411
https://search.proquest.com/docview/2127954226
https://pubmed.ncbi.nlm.nih.gov/PMC6208414
Volume 8
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