Characterization of Population Genetic Structure of red swamp crayfish, Procambarus clarkii, in China

The red swamp crayfish ( Procambarus clarkii ) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive species in the world. This invasive species was dispersed most via human activities including intentional or unintentional carry in China. T...

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Published inScientific reports Vol. 8; no. 1; pp. 5586 - 11
Main Authors Yi, Shaokui, Li, Yanhe, Shi, Linlin, Zhang, Long, Li, Qingbin, Chen, Jing
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 03.04.2018
Nature Publishing Group
Nature Portfolio
Subjects
45/23
631/208/457/649
631/208/8
Anthropogenic factors
Aquaculture
Dispersal
Economic importance
Genetic structure
Genomes
Humanities and Social Sciences
Introduced species
Invasive species
multidisciplinary
Nonnative species
Population
Population genetics
Population structure
Procambarus clarkii
Science
Science (multidisciplinary)
Single-nucleotide polymorphism
China
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Abstract The red swamp crayfish ( Procambarus clarkii ) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive species in the world. This invasive species was dispersed most via human activities including intentional or unintentional carry in China. Thus, P. clarkii naturally distributed in China provides us a desirable mode to investigate the genetic structure of an invasive species dispersed mainly by human-mediated factors. To reveal the impact of human-mediated dispersal on genetic structure of P. clarkii in China, a total of 22,043 genome-wide SNPs were obtained from approximately 7.4 billion raw reads using 2b-RAD technique in this study. An evident pattern of population genetic structure and the asymmetrical migrational rates between different regions were observed with 22 populations based on these SNPs. This study provide a better understanding of the population genetic structure and demographic history of P . clarkii populations in China, inferring that anthropogenic factors (aquaculture or by accident) and ecological factors (e.g., complicated topography and climatic environment), as well as its special biological traits could account for the current population structure pattern and dispersal history of P . clarkii .
AbstractList The red swamp crayfish ( Procambarus clarkii ) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive species in the world. This invasive species was dispersed most via human activities including intentional or unintentional carry in China. Thus, P. clarkii naturally distributed in China provides us a desirable mode to investigate the genetic structure of an invasive species dispersed mainly by human-mediated factors. To reveal the impact of human-mediated dispersal on genetic structure of P. clarkii in China, a total of 22,043 genome-wide SNPs were obtained from approximately 7.4 billion raw reads using 2b-RAD technique in this study. An evident pattern of population genetic structure and the asymmetrical migrational rates between different regions were observed with 22 populations based on these SNPs. This study provide a better understanding of the population genetic structure and demographic history of P . clarkii populations in China, inferring that anthropogenic factors (aquaculture or by accident) and ecological factors (e.g., complicated topography and climatic environment), as well as its special biological traits could account for the current population structure pattern and dispersal history of P . clarkii .
The red swamp crayfish (Procambarus clarkii) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive species in the world. This invasive species was dispersed most via human activities including intentional or unintentional carry in China. Thus, P. clarkii naturally distributed in China provides us a desirable mode to investigate the genetic structure of an invasive species dispersed mainly by human-mediated factors. To reveal the impact of human-mediated dispersal on genetic structure of P. clarkii in China, a total of 22,043 genome-wide SNPs were obtained from approximately 7.4 billion raw reads using 2b-RAD technique in this study. An evident pattern of population genetic structure and the asymmetrical migrational rates between different regions were observed with 22 populations based on these SNPs. This study provide a better understanding of the population genetic structure and demographic history of P. clarkii populations in China, inferring that anthropogenic factors (aquaculture or by accident) and ecological factors (e.g., complicated topography and climatic environment), as well as its special biological traits could account for the current population structure pattern and dispersal history of P. clarkii.
The red swamp crayfish (Procambarus clarkii) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive species in the world. This invasive species was dispersed most via human activities including intentional or unintentional carry in China. Thus, P. clarkii naturally distributed in China provides us a desirable mode to investigate the genetic structure of an invasive species dispersed mainly by human-mediated factors. To reveal the impact of human-mediated dispersal on genetic structure of P. clarkii in China, a total of 22,043 genome-wide SNPs were obtained from approximately 7.4 billion raw reads using 2b-RAD technique in this study. An evident pattern of population genetic structure and the asymmetrical migrational rates between different regions were observed with 22 populations based on these SNPs. This study provide a better understanding of the population genetic structure and demographic history of P. clarkii populations in China, inferring that anthropogenic factors (aquaculture or by accident) and ecological factors (e.g., complicated topography and climatic environment), as well as its special biological traits could account for the current population structure pattern and dispersal history of P. clarkii.The red swamp crayfish (Procambarus clarkii) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive species in the world. This invasive species was dispersed most via human activities including intentional or unintentional carry in China. Thus, P. clarkii naturally distributed in China provides us a desirable mode to investigate the genetic structure of an invasive species dispersed mainly by human-mediated factors. To reveal the impact of human-mediated dispersal on genetic structure of P. clarkii in China, a total of 22,043 genome-wide SNPs were obtained from approximately 7.4 billion raw reads using 2b-RAD technique in this study. An evident pattern of population genetic structure and the asymmetrical migrational rates between different regions were observed with 22 populations based on these SNPs. This study provide a better understanding of the population genetic structure and demographic history of P. clarkii populations in China, inferring that anthropogenic factors (aquaculture or by accident) and ecological factors (e.g., complicated topography and climatic environment), as well as its special biological traits could account for the current population structure pattern and dispersal history of P. clarkii.
Abstract The red swamp crayfish (Procambarus clarkii) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive species in the world. This invasive species was dispersed most via human activities including intentional or unintentional carry in China. Thus, P. clarkii naturally distributed in China provides us a desirable mode to investigate the genetic structure of an invasive species dispersed mainly by human-mediated factors. To reveal the impact of human-mediated dispersal on genetic structure of P. clarkii in China, a total of 22,043 genome-wide SNPs were obtained from approximately 7.4 billion raw reads using 2b-RAD technique in this study. An evident pattern of population genetic structure and the asymmetrical migrational rates between different regions were observed with 22 populations based on these SNPs. This study provide a better understanding of the population genetic structure and demographic history of P. clarkii populations in China, inferring that anthropogenic factors (aquaculture or by accident) and ecological factors (e.g., complicated topography and climatic environment), as well as its special biological traits could account for the current population structure pattern and dispersal history of P. clarkii.
ArticleNumber 5586
Author Yi, Shaokui
Li, Qingbin
Shi, Linlin
Zhang, Long
Li, Yanhe
Chen, Jing
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  orcidid: 0000-0003-2325-0179
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  fullname: Yi, Shaokui
  organization: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Fish Genetics and Breeding Laboratory, The Ohio State University South Centers
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  givenname: Yanhe
  surname: Li
  fullname: Li, Yanhe
  email: liyanhe@mail.hzau.edu.cn
  organization: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University
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  givenname: Linlin
  surname: Shi
  fullname: Shi, Linlin
  organization: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University
– sequence: 4
  givenname: Long
  surname: Zhang
  fullname: Zhang, Long
  organization: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University
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  givenname: Qingbin
  surname: Li
  fullname: Li, Qingbin
  organization: College of fisheries, Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University
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  givenname: Jing
  surname: Chen
  fullname: Chen, Jing
  organization: Institute of Fisheries, Anhui Academy of Agricultural Sciences
BackLink https://www.ncbi.nlm.nih.gov/pubmed/29615795$$D View this record in MEDLINE/PubMed
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Snippet The red swamp crayfish ( Procambarus clarkii ) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive...
The red swamp crayfish (Procambarus clarkii) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive...
Abstract The red swamp crayfish (Procambarus clarkii) is one of the most economically important farmed aquatic species in China. However, it is also a famous...
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SubjectTerms 45/23
631/208/457/649
631/208/8
Anthropogenic factors
Aquaculture
Dispersal
Economic importance
Genetic structure
Genomes
Humanities and Social Sciences
Introduced species
Invasive species
multidisciplinary
Nonnative species
Population
Population genetics
Population structure
Procambarus clarkii
Science
Science (multidisciplinary)
Single-nucleotide polymorphism
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Title Characterization of Population Genetic Structure of red swamp crayfish, Procambarus clarkii, in China
URI https://link.springer.com/article/10.1038/s41598-018-23986-z
https://www.ncbi.nlm.nih.gov/pubmed/29615795
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Volume 8
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