The molecular evolution of cancer associated genes in mammals

• Published in: Scientific reports Vol. 14; no. 1; pp. 11650 - 14
• Main Authors: MacDonald, Nick, Raven, Nynke, Diep, Wendy, Evans, Samantha, Pannipitiya, Senuri, Bramwell, Georgina, Vanbeek, Caitlin, Thomas, Frédéric, Russell, Tracey, Dujon, Antoine M., Telonis-Scott, Marina, Ujvari, Beata
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 22.05.2024; Nature Publishing Group; Nature Portfolio
• Subjects: 631/181/757; 631/208/68; Animal genetics; Animals; Apoptosis; Biodiversity; Bioinformatics; BRCA2 protein; Breast cancer; Cancer; Cancer susceptibility; CASP8 gene; Cdc42 protein; Chiroptera; Comparative genomics; Ecological adaptation; Evolution; Evolution, Molecular; Evolutionary genetics; Gene families; Genes; Genes, Tumor Suppressor; Genetic Predisposition to Disease; Genetics; Genomic analysis; Grb2 protein; Health risks; Humanities and Social Sciences; Humans; HyPhy; Life Sciences; Mammals; Mammals - genetics; Molecular evolution; Mortality risk; multidisciplinary; Neoplasms; Neoplasms - genetics; Oncogenes; Oncogenes - genetics; Phylogeny; Populations and Evolution; Quantitative Methods; Science; Science (multidisciplinary); Selection, Genetic; Tumor suppressor genes; Tumorigenesis; Tumors; Comparative genomics; Evolution; Cancer susceptibility; Mammals; Bioinformatics; HyPhy
• DOI: 10.1038/s41598-024-62425-0
• ISSN: 2045-2322

Cancer is a disease that many multicellular organisms have faced for millions of years, and species have evolved various tumour suppression mechanisms to control oncogenesis. Although cancer occurs across the tree of life, cancer related mortality risks vary across mammalian orders, with Carnivorans particularly affected. Evolutionary theory predicts different selection pressures on genes associated with cancer progression and suppression, including oncogenes, tumour suppressor genes and immune genes. Therefore, we investigated the evolutionary history of cancer associated gene sequences across 384 mammalian taxa, to detect signatures of selection across categories of oncogenes (GRB2, FGL2 and CDC42), tumour suppressors (LITAF, Casp8 and BRCA2) and immune genes (IL2, CD274 and B2M). This approach allowed us to conduct a fine scale analysis of gene wide and site-specific signatures of selection across mammalian lineages under the lens of cancer susceptibility. Phylogenetic analyses revealed that for most species the evolution of cancer associated genes follows the species’ evolution. The gene wide selection analyses revealed oncogenes being the most conserved, tumour suppressor and immune genes having similar amounts of episodic diversifying selection. Despite BRCA2’s status as a key caretaker gene, episodic diversifying selection was detected across mammals. The site-specific selection analyses revealed that the two apoptosis associated domains of the Casp8 gene of bats (Chiroptera) are under opposing forces of selection (positive and negative respectively), highlighting the importance of site-specific selection analyses to understand the evolution of highly complex gene families. Our results highlighted the need to critically assess different types of selection pressure on cancer associated genes when investigating evolutionary adaptations to cancer across the tree of life. This study provides an extensive assessment of cancer associated genes in mammals with highly representative, and substantially large sample size for a comparative genomic analysis in the field and identifies various avenues for future research into the mechanisms of cancer resistance and susceptibility in mammals.