Structural basis of GDP release and gating in G protein coupled Fe2+ transport

G proteins are key molecular switches in the regulation of membrane protein function and signal transduction. The prokaryotic membrane protein FeoB is involved in G protein coupled Fe 2+ transport, and is unique in that the G protein is directly tethered to the membrane domain. Here, we report the s...

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Published inThe EMBO journal Vol. 28; no. 17; pp. 2677 - 2685
Main Authors Guilfoyle, Amy, Maher, Megan J, Rapp, Mikaela, Clarke, Ronald, Harrop, Stephen, Jormakka, Mika
Format Journal Article
LanguageEnglish
Published Chichester, UK John Wiley & Sons, Ltd 02.09.2009
Nature Publishing Group UK
Springer Nature B.V
Nature Publishing Group
Subjects
Online AccessGet full text
ISSN0261-4189
1460-2075
1460-2075
DOI10.1038/emboj.2009.208

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Abstract G proteins are key molecular switches in the regulation of membrane protein function and signal transduction. The prokaryotic membrane protein FeoB is involved in G protein coupled Fe 2+ transport, and is unique in that the G protein is directly tethered to the membrane domain. Here, we report the structure of the soluble domain of FeoB, including the G protein domain, and its assembly into an unexpected trimer. Comparisons between nucleotide free and liganded structures reveal the closed and open state of a central cytoplasmic pore, respectively. In addition, these data provide the first observation of a conformational switch in the nucleotide‐binding G5 motif, defining the structural basis for GDP release. From these results, structural parallels are drawn to eukaryotic G protein coupled membrane processes.
AbstractList G proteins are key molecular switches in the regulation of membrane protein function and signal transduction. The prokaryotic membrane protein FeoB is involved in G protein coupled Fe(2+) transport, and is unique in that the G protein is directly tethered to the membrane domain. Here, we report the structure of the soluble domain of FeoB, including the G protein domain, and its assembly into an unexpected trimer. Comparisons between nucleotide free and liganded structures reveal the closed and open state of a central cytoplasmic pore, respectively. In addition, these data provide the first observation of a conformational switch in the nucleotide-binding G5 motif, defining the structural basis for GDP release. From these results, structural parallels are drawn to eukaryotic G protein coupled membrane processes.
G proteins are key molecular switches in the regulation of membrane protein function and signal transduction. The prokaryotic membrane protein FeoB is involved in G protein coupled Fe(2+) transport, and is unique in that the G protein is directly tethered to the membrane domain. Here, we report the structure of the soluble domain of FeoB, including the G protein domain, and its assembly into an unexpected trimer. Comparisons between nucleotide free and liganded structures reveal the closed and open state of a central cytoplasmic pore, respectively. In addition, these data provide the first observation of a conformational switch in the nucleotide-binding G5 motif, defining the structural basis for GDP release. From these results, structural parallels are drawn to eukaryotic G protein coupled membrane processes. [PUBLICATION ABSTRACT]
G proteins are key molecular switches in the regulation of membrane protein function and signal transduction. The prokaryotic membrane protein FeoB is involved in G protein coupled Fe 2+ transport, and is unique in that the G protein is directly tethered to the membrane domain. Here, we report the structure of the soluble domain of FeoB, including the G protein domain, and its assembly into an unexpected trimer. Comparisons between nucleotide free and liganded structures reveal the closed and open state of a central cytoplasmic pore, respectively. In addition, these data provide the first observation of a conformational switch in the nucleotide-binding G5 motif, defining the structural basis for GDP release. From these results, structural parallels are drawn to eukaryotic G protein coupled membrane processes.
G proteins are key molecular switches in the regulation of membrane protein function and signal transduction. The prokaryotic membrane protein FeoB is involved in G protein coupled Fe2+ transport, and is unique in that the G protein is directly tethered to the membrane domain. Here, we report the structure of the soluble domain of FeoB, including the G protein domain, and its assembly into an unexpected trimer. Comparisons between nucleotide free and liganded structures reveal the closed and open state of a central cytoplasmic pore, respectively. In addition, these data provide the first observation of a conformational switch in the nucleotide‐binding G5 motif, defining the structural basis for GDP release. From these results, structural parallels are drawn to eukaryotic G protein coupled membrane processes.
G proteins are key molecular switches in the regulation of membrane protein function and signal transduction. The prokaryotic membrane protein FeoB is involved in G protein coupled Fe(2+) transport, and is unique in that the G protein is directly tethered to the membrane domain. Here, we report the structure of the soluble domain of FeoB, including the G protein domain, and its assembly into an unexpected trimer. Comparisons between nucleotide free and liganded structures reveal the closed and open state of a central cytoplasmic pore, respectively. In addition, these data provide the first observation of a conformational switch in the nucleotide-binding G5 motif, defining the structural basis for GDP release. From these results, structural parallels are drawn to eukaryotic G protein coupled membrane processes.G proteins are key molecular switches in the regulation of membrane protein function and signal transduction. The prokaryotic membrane protein FeoB is involved in G protein coupled Fe(2+) transport, and is unique in that the G protein is directly tethered to the membrane domain. Here, we report the structure of the soluble domain of FeoB, including the G protein domain, and its assembly into an unexpected trimer. Comparisons between nucleotide free and liganded structures reveal the closed and open state of a central cytoplasmic pore, respectively. In addition, these data provide the first observation of a conformational switch in the nucleotide-binding G5 motif, defining the structural basis for GDP release. From these results, structural parallels are drawn to eukaryotic G protein coupled membrane processes.
Author Guilfoyle, Amy
Maher, Megan J
Rapp, Mikaela
Jormakka, Mika
Clarke, Ronald
Harrop, Stephen
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/19629046$$D View this record in MEDLINE/PubMed
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Keywords crystallography
GDP release
iron transport
GTPase
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Present address: Division of Biophysics, Department of Medical Biochemistry and Biophysics, Karolinska Institute, 171 77 Stockholm, Sweden
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Daley DO, Rapp M, Granseth E, Melen K, Drew D, von Heijne G (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308: 1321-1323
Spoerner M, Herrmann C, Vetter IR, Kalbitzer HR, Wittinghofer A (2001) Dynamic properties of the Ras switch I region and its importance for binding to effectors. Proc Natl Acad Sci USA 98: 4944-4949
Karnoub AE, Weinberg RA (2008) Ras oncogenes: split personalities. Nat Rev Mol Cell Biol 9: 517-531
Sheldrick GM (2008) A short history of SHELX. Acta Crystallogr A 64: 112-122
Tesmer VM, Kawano T, Shankaranarayanan A, Kozasa T, Tesmer JJG (2005) Snapshot of activated G proteins at the membrane: the Galphaq-GRK2-Gbetagamma complex. Science 310: 1686-1690
Scheerer P, Park JH, Hildebrand PW, Kim YJ, Krausz N, Choe H, Hofmann KP, Ernst OP (2008) Crystal structure of opsin in its G-protein-interacting conformation. Nature 455: 497-502
Cartron M, Maddocks S, Gillingham P, Craven C, Andrews S (2006) Feo-transport of ferrous iron into bacteria. BioMetals 19: 143-157
Emsley P, Cowtan K (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60: 2126-2132
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ (2007) Phaser crystallographic software. J Appl Crystallogr 40: 658-674
Marlovits TC, Haase W, Herrmann C, Aller SG, Unger VM (2002) The membrane protein FeoB contains an intramolecular G protein essential for Fe(II) uptake in bacteria. Proc Natl Acad Sci USA 99: 16243-16248
Hamm HE, Deretic D, Arendt A, Hargrave PA, Koenig B, Hofmann KP (1988) Site of G protein binding to rhodopsin mapped with synthetic peptides from the alpha subunit. Science 241: 832-835
Rees DC, Johnson E, Lewinson O (2009) ABC transporters: the power to change. Nat Rev Mol Cell Biol 10: 218-227
Oldham WM, Van Eps N, Preininger AM, Hubbell WL, Hamm HE (2006) Mechanism of the receptor-catalyzed activation of heterotrimeric G proteins. Nat Struct Mol Biol 13: 772-777
Davis IW, Leaver-Fay A, Chen VB, Block JN, Kapral GJ, Wang X, Murray LW, Arendall WB, Snoeyink J, Richardson JS, Richardson DC (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 35: W375-W383
Eshaghi S, Niegowski D, Kohl A, Molina DM, Lesley SA, Nordlund P (2006) Crystal structure of a divalent metal ion transporter CorA at 2.9 Angstrom resolution. Science 313: 354-357
Oldham WM, Hamm HE (2007) How do receptors activate G proteins? In Mechanisms and Pathways of Heterotrimeric G Protein Signaling, Sprang SR (ed) pp 67-93. San Diego: Academic Press
Oldham WM, Hamm HE (2008) Heterotrimeric G protein activation by G-protein-coupled receptors. Nat Rev Mol Cell Biol 9: 60-71
Sprang SR (1997) G protein mechanisms: insights from structural analysis. Annu Rev Biochem 66: 639-678
Johnston CA, Siderovski DP (2007a) Receptor-mediated activation of heterotrimeric G-proteins: current structural insights. Mol Pharmacol 72: 219-230
Vetter IR, Wittinghofer A (2001) The guanine nucleotide-binding switch in three dimensions. Science 294: 1299-1304
Wall MA, Coleman DE, Lee E, Iñiguez-Lluhi JA, Posner BA, Gilman AG, Sprang SR (1995) The structure of the G protein heterotrimer Gi[alpha]1[beta]1[gamma]2. Cell 83: 1047-1058
Bocquet N, Nury H, Baaden M, Le Poupon C, Changeux JP, Delarue M, Corringer PJ (2009) X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation. Nature 457: 111-114
Clayton GM, Silverman WR, Heginbotham L, Morais-Cabral JH (2004) Structural basis of ligand activation in a cyclic nucleotide regulated potassium channel. Cell 119: 615-627
Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53: 240-255
Yernool D, Boudker O, Jin Y, Gouaux E (2004) Structure of a glutamate transporter homologue from Pyrococcus horikoshii. Nature 431: 811-818
Hollenstein K, Dawson RJ, Locher KP (2007) Structure and mechanism of ABC transporter proteins. Curr Opin Struct Biol 17: 412-418
Johnston CA, Siderovski DP (2007b) Structural basis for nucleotide exchange on Gαi subunits and receptor coupling specificity. Proc Natl Acad Sci 104: 2001-2006
Abdulaev NG, Ngo T, Ramon E, Brabazon DM, Marino JP, Ridge KD (2006) The receptor-bound 'empty pocket' state of the heterotrimeric G-protein alpha-subunit is conformationally dynamic. Biochemistry 45: 12986-12997
Hantke K (2003) Is the bacterial ferrous iron transporter FeoB a living fossil? Trends Microbiol 11: 192-195
Schaafsma D, Roscioni SS, Meurs H, Schmidt M (2008) Monomeric G-proteins as signal transducers in airway physiology and pathophysiology. Cell Signal 20: 1705-1714
Scheffzek K, Klebe C, Fritz-Wolf K, Kabsch W, Wittinghofer A (1995) Crystal structure of the nuclear Ras-related protein Ran in its GDP-bound form. Nature 374: 378-381
Kuo A, Gulbis JM, Antcliff JF, Rahman T, Lowe ED, Zimmer J, Cuthbertson J, Ashcroft FM, Ezaki T, Doyle DA (2003) Crystal structure of the potassium channel KirBac1.1 in the closed state. Science 300: 1922-1926
Eng ET, Jalilian AR, Spasov KA, Unger VM (2008) Characterization of a novel prokaryotic GDP dissociation inhibitor domain from the G protein coupled membrane protein FeoB. J Mol Biol 375: 1086-1097
Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47 (Pt 2): 110-119
Bourne HR, Sanders DA, McCormick F (1991) The GTPase superfamily: conserved structure and molecular mechanism. Nature 349: 117-127
Collaborative Computational Project, Number 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50: 760-763
Otwinowski Z, Minor W, Charles W, Carter J (1997) Processing of X-ray diffraction data collected in oscillation mode. In Methods in Enzymology Macromolecular Crystallography Part A, pp 307-326. San Diego: Academic Press
Smart OS, Goodfellow JM, Wallace BA (1993) The pore dimensions of gramicidin A. Biophys J 65: 2455-2460
Spoerner, Herrmann, Vetter, Kalbitzer, Wittinghofer (CR39) 2001; 98
Vetter, Wittinghofer (CR43) 2001; 294
Oldham, Van Eps, Preininger, Hubbell, Hamm (CR30) 2006; 13
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Eshaghi, Niegowski, Kohl, Molina, Lesley, Nordlund (CR13) 2006; 313
Iiri, Herzmark, Nakamoto, van Dop, Bourne (CR18) 1994; 371
Johnston, Siderovski (CR20) 2007; 104
Scheerer, Park, Hildebrand, Kim, Krausz, Choe, Hofmann, Ernst (CR35) 2008; 455
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Cartron, Maddocks, Gillingham, Craven, Andrews (CR6) 2006; 19
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Kuo, Gulbis, Antcliff, Rahman, Lowe, Zimmer, Cuthbertson, Ashcroft, Ezaki, Doyle (CR23) 2003; 300
Finlin, Correll, Pang, Crump, Satin, Andres (CR14) 2006; 281
Yernool, Boudker, Jin, Gouaux (CR45) 2004; 431
Bricogne, Vonrhein, Flensburg, Schiltz, Paciorek (CR4) 2003; 59
Daley, Rapp, Granseth, Melen, Drew, von Heijne (CR9) 2005; 308
Johnston, Siderovski (CR19) 2007; 72
Leslie (CR24) 1992; 26
Bocquet, Nury, Baaden, Le Poupon, Changeux, Delarue, Corringer (CR2) 2009; 457
Sheldrick (CR37) 2008; 64
Karnoub, Weinberg (CR22) 2008; 9
Wall, Coleman, Lee, Iñiguez‐Lluhi, Posner, Gilman, Sprang (CR44) 1995; 83
Tesmer, Kawano, Shankaranarayanan, Kozasa, Tesmer (CR42) 2005; 310
Oldham, Hamm (CR29) 2008; 9
CR8
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Zwart, Afonine, Grosse‐Kunstleve, Hung, Ioerger, McCoy, McKee, Moriarty, Read, Sacchettini, Sauter, Storoni, Terwilliger, Adams (CR46) 2008; 426
Rees, Johnson, Lewinson (CR33) 2009; 10
McCoy, Grosse‐Kunstleve, Adams, Winn, Storoni, Read (CR26) 2007; 40
Jones, Zou, Cowan, Kjeldgaard (CR21) 1991; 47
Hamm, Deretic, Arendt, Hargrave, Koenig, Hofmann (CR15) 1988; 241
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Oldham, Van Eps, Preininger, Hubbell, Hamm (CR31) 2007; 104
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Marlovits, Haase, Herrmann, Aller, Unger (CR25) 2002; 99
Sprang (CR40) 1997; 66
Hollenstein, Dawson, Locher (CR17) 2007; 17
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Snippet G proteins are key molecular switches in the regulation of membrane protein function and signal transduction. The prokaryotic membrane protein FeoB is involved...
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StartPage 2677
SubjectTerms Binding Sites
Biological Transport
Cation Transport Proteins - chemistry
Cation Transport Proteins - metabolism
crystallography
Cytoplasm - metabolism
EMBO37
EMBO40
Escherichia coli Proteins - chemistry
Escherichia coli Proteins - metabolism
GDP release
GTP-Binding Proteins - chemistry
GTP-Binding Proteins - metabolism
GTPase
Guanosine Diphosphate - chemistry
Guanosine Diphosphate - metabolism
Iron - metabolism
iron transport
Membrane processes
Membranes
Models, Molecular
Molecular biology
Molecular structure
Protein Conformation
Proteins
Signal Transduction
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Title Structural basis of GDP release and gating in G protein coupled Fe2+ transport
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Volume 28
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