GXD: a community resource of mouse Gene Expression Data

• Published in: Mammalian genome Vol. 26; no. 7-8; pp. 314 - 324
• Main Authors: Smith, Constance M., Finger, Jacqueline H., Hayamizu, Terry F., McCright, Ingeborg J., Xu, Jingxia, Eppig, Janan T., Kadin, James A., Richardson, Joel E., Ringwald, Martin
• Format: Journal Article
• Language: English
• Published: New York Springer US 01.08.2015; Springer Nature B.V
• Subjects: Animal Genetics and Genomics; Animals; Biomedical and Life Sciences; Cell Biology; Data Mining - methods; Databases, Genetic; Embryo, Mammalian; Gene Expression; Genetic Markers; Genome; Human Genetics; Humans; Information Dissemination; Life Sciences; Mice; Organ Specificity; User-Computer Interface; Gene Expression Database; Gene Expression Information; Expression Data; Mouse Genome Informatics; Data Submission
• DOI: 10.1007/s00335-015-9563-1
• ISSN: 0938-8990

The Gene Expression Database (GXD) is an extensive, easily searchable, and freely available database of mouse gene expression information ( www.informatics.jax.org/expression.shtml ). GXD was developed to foster progress toward understanding the molecular basis of human development and disease. GXD contains information about when and where genes are expressed in different tissues in the mouse, especially during the embryonic period. GXD collects different types of expression data from wild-type and mutant mice, including RNA in situ hybridization, immunohistochemistry, RT-PCR, and northern and western blot results. The GXD curators read the scientific literature and enter the expression data from those papers into the database. GXD also acquires expression data directly from researchers, including groups doing large-scale expression studies. GXD currently contains nearly 1.5 million expression results for over 13,900 genes. In addition, it has over 265,000 images of expression data, allowing users to retrieve the primary data and interpret it themselves. By being an integral part of the larger Mouse Genome Informatics (MGI) resource, GXD’s expression data are combined with other genetic, functional, phenotypic, and disease-oriented data. This allows GXD to provide tools for researchers to evaluate expression data in the larger context, search by a wide variety of biologically and biomedically relevant parameters, and discover new data connections to help in the design of new experiments. Thus, GXD can provide researchers with critical insights into the functions of genes and the molecular mechanisms of development, differentiation, and disease.