Strengthening Causal Inference in Exposomics Research: Application of Genetic Data and Methods

• Published in: Environmental health perspectives Vol. 130; no. 5; p. 55001
• Main Authors: Avery, Christy L, Howard, Annie Green, Ballou, Anna F, Buchanan, Victoria L, Collins, Jason M, Downie, Carolina G, Engel, Stephanie M, Graff, Mariaelisa, Highland, Heather M, Lee, Moa P, Lilly, Adam G, Lu, Kun, Rager, Julia E, Staley, Brooke S, North, Kari E, Gordon-Larsen, Penny
• Format: Journal Article
• Language: English
• Published: United States National Institute of Environmental Health Sciences 01.05.2022; Environmental Health Perspectives
• Subjects: Biomarkers; Environmental Exposure - analysis; Environmental health; Exposome; Genetic aspects; Medical research; Medicine, Experimental; Methods; Research Design; Toxicogenomics; United States
• ISSN: 0091-6765; 1552-9924; 1552-9924
• DOI: 10.1289/EHP9098

Advances in technologies to measure a broad set of exposures have led to a range of exposome research efforts. Yet, these efforts have insufficiently integrated methods that incorporate genetic data to strengthen causal inference, despite evidence that many exposome-associated phenotypes are heritable. Objective: We demonstrate how integration of methods and study designs that incorporate genetic data can strengthen causal inference in exposomics research by helping address six challenges: reverse causation and unmeasured confounding, comprehensive examination of phenotypic effects, low efficiency, replication, multilevel data integration, and characterization of tissue-specific effects. Examples are drawn from studies of biomarkers and health behaviors, exposure domains where the causal inference methods we describe are most often applied. Discussion: Technological, computational, and statistical advances in genotyping, imputation, and analysis, combined with broad data sharing and cross-study collaborations, offer multiple opportunities to strengthen causal inference in exposomics research. Full application of these opportunities will require an expanded understanding of genetic variants that predict exposome phenotypes as well as an appreciation that the utility of genetic variants for causal inference will vary by exposure and may depend on large sample sizes. However, several of these challenges can be addressed through international scientific collaborations that prioritize data sharing. Ultimately, we anticipate that efforts to better integrate methods that incorporate genetic data will extend the reach of exposomics research by helping address the challenges of comprehensively measuring the exposome and its health effects across studies, the life course, and in varied contexts and diverse populations. https://doi.org/10.1289/EHP9098.