The complete genome sequence of CrRV-Ch01, a new member of the family Rhabdoviridae in the parasitic copepod Caligus rogercresseyi present on farmed Atlantic salmon (Salmo salar) in Chile
We have determined the complete genome sequence of a new rhabdovirus, tentatively named Caligus rogercresseyi rhabdovirus Ch01 (CrRV-Ch01), which was found in the parasite Caligus rogercresseyi , present on farmed Atlantic salmon ( Salmo salar ) in Chile. The genome encodes the five canonical rhabdo...
Saved in:
| Published in | Archives of virology Vol. 163; no. 6; pp. 1657 - 1661 |
|---|---|
| Main Authors | , , |
| Format | Journal Article |
| Language | English |
| Published |
Vienna
Springer Vienna
01.06.2018
Springer Nature B.V |
| Subjects | |
| Online Access | Get full text |
Cover
Loading…
| Abstract | We have determined the complete genome sequence of a new rhabdovirus, tentatively named Caligus rogercresseyi rhabdovirus Ch01 (CrRV-Ch01), which was found in the parasite
Caligus rogercresseyi
, present on farmed Atlantic salmon (
Salmo salar
) in Chile. The genome encodes the five canonical rhabdovirus proteins in addition to an unknown protein, in the order N-P-M-U (unknown)-G-L. Phylogenetic analysis showed that the virus clusters with two rhabdoviruses (Lepeophtheirus salmonis rhabdovirus No9 and Lepeophtheirus salmonis rhabdovirus No127) obtained from another parasitic caligid,
Lepeophtheirus salmonis
, present on farmed Atlantic salmon on the west coast of Norway. |
|---|---|
| AbstractList | We have determined the complete genome sequence of a new rhabdovirus, tentatively named Caligus rogercresseyi rhabdovirus Ch01 (CrRV-Ch01), which was found in the parasite
Caligus rogercresseyi
, present on farmed Atlantic salmon (
Salmo salar
) in Chile. The genome encodes the five canonical rhabdovirus proteins in addition to an unknown protein, in the order N-P-M-U (unknown)-G-L. Phylogenetic analysis showed that the virus clusters with two rhabdoviruses (Lepeophtheirus salmonis rhabdovirus No9 and Lepeophtheirus salmonis rhabdovirus No127) obtained from another parasitic caligid,
Lepeophtheirus salmonis
, present on farmed Atlantic salmon on the west coast of Norway. We have determined the complete genome sequence of a new rhabdovirus, tentatively named Caligus rogercresseyi rhabdovirus Ch01 (CrRV-Ch01), which was found in the parasite Caligus rogercresseyi, present on farmed Atlantic salmon (Salmo salar) in Chile. The genome encodes the five canonical rhabdovirus proteins in addition to an unknown protein, in the order N-P-M-U (unknown)-G-L. Phylogenetic analysis showed that the virus clusters with two rhabdoviruses (Lepeophtheirus salmonis rhabdovirus No9 and Lepeophtheirus salmonis rhabdovirus No127) obtained from another parasitic caligid, Lepeophtheirus salmonis, present on farmed Atlantic salmon on the west coast of Norway. We have determined the complete genome sequence of a new rhabdovirus, tentatively named Caligus rogercresseyi rhabdovirus Ch01 (CrRV-Ch01), which was found in the parasite Caligus rogercresseyi, present on farmed Atlantic salmon (Salmo salar) in Chile. The genome encodes the five canonical rhabdovirus proteins in addition to an unknown protein, in the order N-P-M-U (unknown)-G-L. Phylogenetic analysis showed that the virus clusters with two rhabdoviruses (Lepeophtheirus salmonis rhabdovirus No9 and Lepeophtheirus salmonis rhabdovirus No127) obtained from another parasitic caligid, Lepeophtheirus salmonis, present on farmed Atlantic salmon on the west coast of Norway.We have determined the complete genome sequence of a new rhabdovirus, tentatively named Caligus rogercresseyi rhabdovirus Ch01 (CrRV-Ch01), which was found in the parasite Caligus rogercresseyi, present on farmed Atlantic salmon (Salmo salar) in Chile. The genome encodes the five canonical rhabdovirus proteins in addition to an unknown protein, in the order N-P-M-U (unknown)-G-L. Phylogenetic analysis showed that the virus clusters with two rhabdoviruses (Lepeophtheirus salmonis rhabdovirus No9 and Lepeophtheirus salmonis rhabdovirus No127) obtained from another parasitic caligid, Lepeophtheirus salmonis, present on farmed Atlantic salmon on the west coast of Norway. |
| Author | Nylund, Are Økland, Arnfinn Lodden Skoge, Renate Hvidsten |
| Author_xml | – sequence: 1 givenname: Arnfinn Lodden surname: Økland fullname: Økland, Arnfinn Lodden email: arnfinn.okland@uib.no organization: Department of Biology, University of Bergen – sequence: 2 givenname: Renate Hvidsten surname: Skoge fullname: Skoge, Renate Hvidsten organization: Department of Biology, University of Bergen – sequence: 3 givenname: Are surname: Nylund fullname: Nylund, Are organization: Department of Biology, University of Bergen |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/29445987$$D View this record in MEDLINE/PubMed |
| BookMark | eNqFUl1rFDEUDVKx2-oP8EUCvrTgaDKTTJKXQhn8goJQq68hm7mzmzKTjMlsZfvX-ufMdGvVgvqSj3vPOTk3nAO054MHhJ5T8poSIt6kvBBeECqLStSyuH6EFpRVZSGFkntoQSrCClkTuY8OUrokJBcq_gTtl4oxrqRYoJuLNWAbhrGHCfAKfBgAJ_i2AW8Bhw438fxr0awJfYUN9vAdDzAsIc6tKVM7M7h-i8_XZtmGKxddawA7f9sbTTTJTc7mB0YYQ4sb07vVJuEYVhBthJRg6_CYD-AnHHyWiwO0-HTqjZ-JyfRDLh99nvf5ZuLxLN-sXQ9P0ePO9Ame3e2H6Mu7txfNh-Ls0_uPzelZYXmtpsJ2JaVy2YrWKMFrLspKtIozbhQHS2zFZW0tFcoyMC03puqAdFAz4KRjoq4O0clOd9wsszubvUbT6zG6wcStDsbpPzverfUqXGmuuKRMZIGjO4EY8s-mSQ8uWejzkBA2SWd_tSqV4tX_oYSUTFJSzqovH0Avwyb6_BO3qKxJmcyoF7-bv3f9MwIZQHcAG0NKEbp7CCV6jpnexUznmOk5Zvo6c8QDjnWTmVyY53f9P5nljpnyKz6n4Jfpv5N-AFbf6W8 |
| CitedBy_id | crossref_primary_10_1111_raq_12456 crossref_primary_10_1371_journal_ppat_1011386 crossref_primary_10_1007_s00705_019_04247_4 crossref_primary_10_1007_s00705_018_04119_3 crossref_primary_10_1186_s12985_019_1147_3 crossref_primary_10_1016_j_pt_2021_05_006 |
| Cites_doi | 10.1093/gbe/evu163 10.1016/j.virusres.2009.09.013 10.1016/j.chom.2011.09.002 10.1128/JVI.79.11.6781-6790.2005 10.1016/j.aquaculture.2013.10.016 10.7554/eLife.05378 10.1016/j.virusres.2007.10.018 10.1016/j.virusres.2011.09.004 10.1038/nrg3199 10.1093/molbev/msn067 10.1093/bioinformatics/btu033 10.1016/j.virusres.2010.09.007 10.1016/j.virusres.2011.06.021 10.1128/JVI.76.10.4679-4687.2002 10.1371/journal.ppat.1004664 10.1016/j.prevetmed.2011.12.002 10.1038/nature20167 10.1016/j.biologicals.2016.04.004 10.1099/vir.0.026120-0 10.1038/s41598-017-14282-3 10.1093/bioinformatics/btp348 10.1016/j.virol.2009.12.013 10.1099/0022-1317-71-5-1153 10.1016/j.virol.2015.02.011 10.1371/journal.pone.0112517 10.1099/0022-1317-75-8-1889 10.1016/S0022-2836(05)80360-2 10.1186/s13100-015-0047-3 10.1007/s10695-015-0134-x 10.1038/srep23887 10.1371/journal.pgen.1001191 10.1016/j.ympev.2012.06.008 |
| ContentType | Journal Article |
| Copyright | The Author(s) 2018 Archives of Virology is a copyright of Springer, (2018). All Rights Reserved. |
| Copyright_xml | – notice: The Author(s) 2018 – notice: Archives of Virology is a copyright of Springer, (2018). All Rights Reserved. |
| DBID | C6C AAYXX CITATION NPM 3V. 7TK 7TM 7U9 7X7 7XB 88A 88E 8AO 8C1 8FD 8FE 8FH 8FI 8FJ 8FK ABUWG AFKRA AZQEC BBNVY BENPR BHPHI CCPQU DWQXO FR3 FYUFA GHDGH GNUQQ H94 HCIFZ K9. LK8 M0S M1P M7P P64 PHGZM PHGZT PJZUB PKEHL PPXIY PQEST PQGLB PQQKQ PQUKI PRINS RC3 7X8 7S9 L.6 5PM |
| DOI | 10.1007/s00705-018-3768-z |
| DatabaseName | SpringerOpen Free (Free internet resource, activated by CARLI) CrossRef PubMed ProQuest Central (Corporate) Neurosciences Abstracts Nucleic Acids Abstracts Virology and AIDS Abstracts Health & Medical Collection ProQuest Central (purchase pre-March 2016) Biology Database (Alumni Edition) Medical Database (Alumni Edition) ProQuest Pharma Collection Public Health Database Technology Research Database ProQuest SciTech Collection ProQuest Natural Science Collection Hospital Premium Collection Hospital Premium Collection (Alumni Edition) ProQuest Central (Alumni) (purchase pre-March 2016) ProQuest Central (Alumni) ProQuest Central UK/Ireland ProQuest Central Essentials Biological Science Collection ProQuest Central Natural Science Collection ProQuest One Community College ProQuest Central Korea Engineering Research Database Health Research Premium Collection Health Research Premium Collection (Alumni) ProQuest Central Student AIDS and Cancer Research Abstracts SciTech Premium Collection ProQuest Health & Medical Complete (Alumni) ProQuest Biological Science Collection ProQuest Health & Medical Collection Medical Database Biological Science Database Biotechnology and BioEngineering Abstracts ProQuest Central Premium ProQuest One Academic (New) ProQuest Health & Medical Research Collection ProQuest One Academic Middle East (New) ProQuest One Health & Nursing ProQuest One Academic Eastern Edition (DO NOT USE) ProQuest One Applied & Life Sciences ProQuest One Academic ProQuest One Academic UKI Edition ProQuest Central China Genetics Abstracts MEDLINE - Academic AGRICOLA AGRICOLA - Academic PubMed Central (Full Participant titles) |
| DatabaseTitle | CrossRef PubMed ProQuest Central Student Technology Research Database ProQuest One Academic Middle East (New) ProQuest Central Essentials Nucleic Acids Abstracts ProQuest Health & Medical Complete (Alumni) ProQuest Central (Alumni Edition) SciTech Premium Collection ProQuest One Community College ProQuest One Health & Nursing ProQuest Natural Science Collection ProQuest Pharma Collection ProQuest Central China ProQuest Biology Journals (Alumni Edition) ProQuest Central ProQuest One Applied & Life Sciences ProQuest Health & Medical Research Collection Genetics Abstracts Health Research Premium Collection Health and Medicine Complete (Alumni Edition) Natural Science Collection ProQuest Central Korea Health & Medical Research Collection Biological Science Collection AIDS and Cancer Research Abstracts ProQuest Central (New) ProQuest Medical Library (Alumni) ProQuest Public Health Virology and AIDS Abstracts ProQuest Biological Science Collection ProQuest One Academic Eastern Edition ProQuest Hospital Collection Health Research Premium Collection (Alumni) Biological Science Database ProQuest SciTech Collection Neurosciences Abstracts ProQuest Hospital Collection (Alumni) Biotechnology and BioEngineering Abstracts ProQuest Health & Medical Complete ProQuest Medical Library ProQuest One Academic UKI Edition Engineering Research Database ProQuest One Academic ProQuest One Academic (New) ProQuest Central (Alumni) MEDLINE - Academic AGRICOLA AGRICOLA - Academic |
| DatabaseTitleList | AGRICOLA PubMed MEDLINE - Academic ProQuest Central Student |
| Database_xml | – sequence: 1 dbid: C6C name: Springer Nature Link url: http://www.springeropen.com/ sourceTypes: Publisher – sequence: 2 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 3 dbid: BENPR name: ProQuest Central url: https://www.proquest.com/central sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Biology |
| EISSN | 1432-8798 |
| EndPage | 1661 |
| ExternalDocumentID | PMC5958147 29445987 10_1007_s00705_018_3768_z |
| Genre | Journal Article |
| GeographicLocations | Chile Norway |
| GeographicLocations_xml | – name: Chile – name: Norway |
| GroupedDBID | --- -4W -56 -5G -BR -EM -Y2 -~C -~X .86 .GJ .VR 06C 06D 0R~ 0VY 199 1N0 2.D 203 23N 28- 29~ 2J2 2JN 2JY 2KG 2KM 2LR 2P1 2VQ 2~H 30V 36B 3O- 3SX 3V. 4.4 406 408 409 40D 40E 53G 5QI 5VS 67N 67Z 6NX 78A 7X7 88A 88E 8AO 8C1 8FE 8FH 8FI 8FJ 8TC 8UJ 95- 95. 95~ 96X A8Z AAAVM AABHQ AACDK AAHBH AAHNG AAIAL AAJBT AAJKR AANXM AANZL AARHV AARTL AASML AATNV AATVU AAUYE AAWCG AAYIU AAYQN AAYTO AAYZH ABAKF ABBBX ABBXA ABDZT ABECU ABFTV ABHLI ABHQN ABJNI ABJOX ABKCH ABKTR ABMNI ABMQK ABNWP ABPLI ABQBU ABQSL ABSXP ABTEG ABTHY ABTKH ABTMW ABULA ABUWG ABWNU ABXPI ACAOD ACBXY ACDTI ACGFS ACHSB ACHXU ACKNC ACMDZ ACMLO ACOKC ACOMO ACPIV ACPRK ACZOJ ADBBV ADHIR ADIMF ADINQ ADKNI ADKPE ADRFC ADTPH ADURQ ADYFF ADYPR ADZKW AEBTG AEFIE AEFQL AEGAL AEGNC AEJHL AEJRE AEKMD AEMSY AENEX AEOHA AEPYU AESKC AETLH AEVLU AEXYK AFBBN AFEXP AFFNX AFGCZ AFKRA AFLOW AFQWF AFWTZ AFZKB AGAYW AGDGC AGGDS AGJBK AGMZJ AGQEE AGQMX AGRTI AGWIL AGWZB AGYKE AHAVH AHBYD AHKAY AHMBA AHSBF AHYZX AIAKS AIGIU AIIXL AILAN AITGF AJBLW AJRNO AJZVZ AKMHD ALIPV ALMA_UNASSIGNED_HOLDINGS ALWAN AMKLP AMXSW AMYLF AOCGG ARMRJ AXYYD AZFZN B-. BA0 BBNVY BBWZM BDATZ BENPR BGNMA BHPHI BPHCQ BSONS BVXVI C6C CAG CCPQU COF CSCUP DDRTE DL5 DNIVK DPUIP EBD EBLON EBS EIOEI EJD EMB EMOBN EN4 EPAXT ESBYG F5P FEDTE FERAY FFXSO FIGPU FINBP FNLPD FRRFC FSGXE FWDCC FYUFA G-Y G-Z GGCAI GGRSB GJIRD GNWQR GQ6 GQ7 GQ8 GXS H13 HCIFZ HF~ HG5 HG6 HMCUK HMJXF HQYDN HRMNR HVGLF HZ~ I09 IHE IJ- IKXTQ ITM IWAJR IXC IZIGR IZQ I~X I~Z J-C J0Z JBSCW JCJTX JZLTJ KDC KOV KOW KPH LAS LK8 LLZTM M0L M1P M4Y M7P MA- N2Q N9A NB0 NDZJH NPVJJ NQJWS NU0 O9- O93 O9G O9I O9J OAM P19 P2P PF0 PQQKQ PROAC PSQYO PT4 PT5 Q2X QOK QOR QOS R89 R9I RHV RIG RNI RNS ROL RPX RRX RSV RZK S16 S1Z S26 S27 S28 S3A S3B SAP SBL SBY SCLPG SDH SDM SHX SISQX SJYHP SNE SNPRN SNX SOHCF SOJ SPISZ SRMVM SSLCW SSXJD STPWE SV3 SZN T13 T16 TSG TSK TSV TUC U2A U9L UG4 UKHRP UOJIU UTJUX UZXMN VC2 VFIZW W23 W48 WH7 WJK WK6 WK8 Y6R YLTOR Z45 Z7U Z7V Z7W Z7Y Z82 Z83 Z87 Z8O Z8P Z8Q Z8S Z8V Z8W Z91 Z92 ZGI ZMTXR ZOVNA ~EX ~KM AAPKM AAYXX ABBRH ABDBE ABFSG ACSTC ADHKG AEZWR AFDZB AFHIU AFOHR AGQPQ AHPBZ AHWEU AIXLP ATHPR AYFIA CITATION PHGZM PHGZT NPM 7TK 7TM 7U9 7XB 8FD 8FK ABRTQ AZQEC DWQXO FR3 GNUQQ H94 K9. P64 PJZUB PKEHL PPXIY PQEST PQGLB PQUKI PRINS RC3 7X8 7S9 L.6 5PM |
| ID | FETCH-LOGICAL-c569t-cf2118bd7da975657237d9545a95ec0c3586cc179c4ead5aa3fe0fe64e50f4763 |
| IEDL.DBID | C6C |
| ISSN | 0304-8608 1432-8798 |
| IngestDate | Thu Aug 21 13:59:36 EDT 2025 Mon Aug 11 02:39:39 EDT 2025 Thu Jul 10 22:19:40 EDT 2025 Sat Aug 23 13:53:59 EDT 2025 Thu Apr 03 07:13:36 EDT 2025 Thu Apr 24 22:48:46 EDT 2025 Tue Jul 01 02:42:53 EDT 2025 Fri Feb 21 02:41:12 EST 2025 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 6 |
| Language | English |
| License | Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c569t-cf2118bd7da975657237d9545a95ec0c3586cc179c4ead5aa3fe0fe64e50f4763 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Handling Editor: Chan-Shing Lin. |
| OpenAccessLink | https://doi.org/10.1007/s00705-018-3768-z |
| PMID | 29445987 |
| PQID | 2002116148 |
| PQPubID | 48320 |
| PageCount | 5 |
| ParticipantIDs | pubmedcentral_primary_oai_pubmedcentral_nih_gov_5958147 proquest_miscellaneous_2116929953 proquest_miscellaneous_2002481027 proquest_journals_2002116148 pubmed_primary_29445987 crossref_primary_10_1007_s00705_018_3768_z crossref_citationtrail_10_1007_s00705_018_3768_z springer_journals_10_1007_s00705_018_3768_z |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | 2018-06-01 |
| PublicationDateYYYYMMDD | 2018-06-01 |
| PublicationDate_xml | – month: 06 year: 2018 text: 2018-06-01 day: 01 |
| PublicationDecade | 2010 |
| PublicationPlace | Vienna |
| PublicationPlace_xml | – name: Vienna – name: Austria – name: Wien |
| PublicationSubtitle | Official Journal of the Virology Division of the International Union of Microbiological Societies |
| PublicationTitle | Archives of virology |
| PublicationTitleAbbrev | Arch Virol |
| PublicationTitleAlternate | Arch Virol |
| PublicationYear | 2018 |
| Publisher | Springer Vienna Springer Nature B.V |
| Publisher_xml | – name: Springer Vienna – name: Springer Nature B.V |
| References | Walker (CR25) 2011; 162 Walker (CR19) 1994; 75 Geisler, Jarvis (CR14) 2016; 44 Le, Gascuel (CR33) 2008; 25 Quan (CR21) 2010; 147 Tao (CR22) 2008; 132 Aiewsakun, Katzourakis (CR12) 2015; 479–480 Nolden (CR18) 2016; 6 Feschotte, Gilbert (CR10) 2012; 13 Quan (CR26) 2011; 160 Allison (CR29) 2011; 155 Walker (CR23) 2015; 11 Poch (CR30) 1990; 71 Fort (CR8) 2011; 29 Capella-Gutiérrez, Silla-Martínez, Gabaldón (CR31) 2009; 25 Freed (CR20) 2002; 76 Katzourakis, Gifford (CR6) 2010; 6 Gubala (CR28) 2011; 92 González, Vargas-Chacoff, Marín (CR2) 2016; 42 Altschul (CR16) 1990; 215 Li (CR4) 2015; 4 Holmes (CR7) 2011; 10 Springfeld, Darai, Cattaneo (CR24) 2005; 79 Gubala (CR27) 2010; 399 Metegnier (CR13) 2015; 6 Oelckers (CR3) 2014; 420 Shi (CR5) 2016; 540 Thézé (CR11) 2014; 6 Hall (CR17) 1999; 41 Økland (CR15) 2014; 9 Øvergård (CR34) 2017; 7 Hamilton-West (CR1) 2012; 104 Stamatakis (CR32) 2014; 30 Ballinger, Bruenn, Taylor (CR9) 2012; 65 P Fort (3768_CR8) 2011; 29 AB Allison (3768_CR29) 2011; 155 A Katzourakis (3768_CR6) 2010; 6 EO Freed (3768_CR20) 2002; 76 M Shi (3768_CR5) 2016; 540 A Gubala (3768_CR28) 2011; 92 MJ Ballinger (3768_CR9) 2012; 65 MP González (3768_CR2) 2016; 42 T Nolden (3768_CR18) 2016; 6 A Gubala (3768_CR27) 2010; 399 P-L Quan (3768_CR21) 2010; 147 A Stamatakis (3768_CR32) 2014; 30 C Geisler (3768_CR14) 2016; 44 O Poch (3768_CR30) 1990; 71 C Feschotte (3768_CR10) 2012; 13 PJ Walker (3768_CR25) 2011; 162 J-J Tao (3768_CR22) 2008; 132 CX Li (3768_CR4) 2015; 4 SQ Le (3768_CR33) 2008; 25 K Oelckers (3768_CR3) 2014; 420 PJ Walker (3768_CR19) 1994; 75 EC Holmes (3768_CR7) 2011; 10 G Metegnier (3768_CR13) 2015; 6 C Hamilton-West (3768_CR1) 2012; 104 C Springfeld (3768_CR24) 2005; 79 SF Altschul (3768_CR16) 1990; 215 P-L Quan (3768_CR26) 2011; 160 P Aiewsakun (3768_CR12) 2015; 479–480 S Capella-Gutiérrez (3768_CR31) 2009; 25 J Thézé (3768_CR11) 2014; 6 AL Økland (3768_CR15) 2014; 9 A-C Øvergård (3768_CR34) 2017; 7 TA Hall (3768_CR17) 1999; 41 PJ Walker (3768_CR23) 2015; 11 |
| References_xml | – volume: 6 start-page: 2129 issue: 8 year: 2014 end-page: 2140 ident: CR11 article-title: Remarkable diversity of endogenous viruses in a Crustacean genome publication-title: Genome Biol Evol doi: 10.1093/gbe/evu163 – volume: 147 start-page: 17 issue: 1 year: 2010 end-page: 24 ident: CR21 article-title: Moussa virus: a new member of the family isolated from mosquitoes in Cote d’Ivoire publication-title: Virus Res doi: 10.1016/j.virusres.2009.09.013 – volume: 10 start-page: 368 issue: 4 year: 2011 end-page: 377 ident: CR7 article-title: The evolution of endogenous viral elements publication-title: Cell Host Microbe doi: 10.1016/j.chom.2011.09.002 – volume: 79 start-page: 6781 issue: 11 year: 2005 end-page: 6790 ident: CR24 article-title: Characterization of the Tupaia rhabdovirus genome reveals a long open reading frame overlapping with P and a novel gene encoding a small hydrophobic protein publication-title: J Virol doi: 10.1128/JVI.79.11.6781-6790.2005 – volume: 420 start-page: 126 year: 2014 end-page: 132 ident: CR3 article-title: as a potential vector for transmission of Infectious Salmon Anaemia (ISA) virus in Chile publication-title: Aquaculture doi: 10.1016/j.aquaculture.2013.10.016 – volume: 4 start-page: e05378 year: 2015 ident: CR4 article-title: Unprecedented genomic diversity of RNA viruses in Arthropods reveals the ancestry of negative-sense RNA viruses publication-title: eLife doi: 10.7554/eLife.05378 – volume: 132 start-page: 86 issue: 1 year: 2008 end-page: 96 ident: CR22 article-title: Genomic sequence of mandarin fish rhabdovirus with an unusual small non-transcriptional ORF publication-title: Virus Res doi: 10.1016/j.virusres.2007.10.018 – volume: 162 start-page: 110 issue: 1 year: 2011 end-page: 125 ident: CR25 article-title: Rhabdovirus accessory genes publication-title: Virus Res doi: 10.1016/j.virusres.2011.09.004 – volume: 13 start-page: 283 issue: 4 year: 2012 end-page: 296 ident: CR10 article-title: Endogenous viruses: insights into viral evolution and impact on host biology publication-title: Nat Rev Genet doi: 10.1038/nrg3199 – volume: 25 start-page: 1307 issue: 7 year: 2008 end-page: 1320 ident: CR33 article-title: An improved general amino acid replacement matrix publication-title: Mol Biol Evol doi: 10.1093/molbev/msn067 – volume: 30 start-page: 1312 issue: 9 year: 2014 end-page: 1313 ident: CR32 article-title: RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu033 – volume: 155 start-page: 112 issue: 1 year: 2011 end-page: 122 ident: CR29 article-title: Characterization of Durham virus, a novel rhabdovirus that encodes both a C and SH protein publication-title: Virus Res doi: 10.1016/j.virusres.2010.09.007 – volume: 160 start-page: 206 issue: 1 year: 2011 end-page: 213 ident: CR26 article-title: Genetic characterization of K13965, a strain of Oak Vale virus from Western Australia publication-title: Virus Res doi: 10.1016/j.virusres.2011.06.021 – volume: 29 start-page: 226 year: 2011 ident: CR8 article-title: Fossil rhabdoviral sequences integrated into arthropod genomes: ontogeny, evolution and potential functionality publication-title: Mol Biol Evol – volume: 76 start-page: 4679 issue: 10 year: 2002 end-page: 4687 ident: CR20 article-title: Viral late domains publication-title: J Virol doi: 10.1128/JVI.76.10.4679-4687.2002 – volume: 11 start-page: e1004664 issue: 2 year: 2015 ident: CR23 article-title: Evolution of genome size and complexity in the Rhabdoviridae publication-title: PLoS Pathog doi: 10.1371/journal.ppat.1004664 – volume: 104 start-page: 341 issue: 3 year: 2012 end-page: 345 ident: CR1 article-title: Epidemiological description of the sea lice ( ) situation in southern Chile in August 2007 publication-title: Prev Vet Med doi: 10.1016/j.prevetmed.2011.12.002 – volume: 540 start-page: 539 issue: 7634 year: 2016 end-page: 543 ident: CR5 article-title: Redefining the invertebrate RNA virosphere publication-title: Nature doi: 10.1038/nature20167 – volume: 44 start-page: 219 issue: 4 year: 2016 end-page: 225 ident: CR14 article-title: Rhabdovirus-like endogenous viral elements in the genome of insect cells are actively transcribed: implications for adventitious virus detection publication-title: Biologicals doi: 10.1016/j.biologicals.2016.04.004 – volume: 92 start-page: 2160 issue: 9 year: 2011 end-page: 2170 ident: CR28 article-title: Tibrogargan and coastal plains rhabdoviruses: genomic characterization, evolution of novel genes and seroprevalence in Australian livestock publication-title: J Gen Virol doi: 10.1099/vir.0.026120-0 – volume: 7 start-page: 14030 issue: 1 year: 2017 ident: CR34 article-title: RNAi-mediated treatment of two vertically transmitted rhabdovirus infecting the salmon louse ( ) publication-title: Sci Rep doi: 10.1038/s41598-017-14282-3 – volume: 25 start-page: 1972 issue: 15 year: 2009 end-page: 1973 ident: CR31 article-title: trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp348 – volume: 41 start-page: 95 year: 1999 end-page: 98 ident: CR17 article-title: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT publication-title: Nucleic Acids Symp Ser – volume: 399 start-page: 98 issue: 1 year: 2010 end-page: 108 ident: CR27 article-title: Ngaingan virus, a macropod-associated rhabdovirus, contains a second glycoprotein gene and seven novel open reading frames publication-title: Virology doi: 10.1016/j.virol.2009.12.013 – volume: 71 start-page: 1153 issue: 5 year: 1990 end-page: 1162 ident: CR30 article-title: Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains publication-title: J Gen Virol doi: 10.1099/0022-1317-71-5-1153 – volume: 479–480 start-page: 26 year: 2015 end-page: 37 ident: CR12 article-title: Endogenous viruses: connecting recent and ancient viral evolution publication-title: Virology doi: 10.1016/j.virol.2015.02.011 – volume: 9 start-page: e112517 issue: 11 year: 2014 ident: CR15 article-title: Genomic characterization and phylogenetic position of two new species in infecting the parasitic Copepod, (Lepeophtheirus salmonis) publication-title: PLoS One doi: 10.1371/journal.pone.0112517 – volume: 75 start-page: 1889 issue: Pt 8 year: 1994 end-page: 1899 ident: CR19 article-title: Structural and antigenic analysis of the nucleoprotein of bovine ephemeral fever rhabdovirus publication-title: J Gen Virol doi: 10.1099/0022-1317-75-8-1889 – volume: 215 start-page: 403 issue: 3 year: 1990 end-page: 410 ident: CR16 article-title: Basic local alignment search tool publication-title: J Mol Biol doi: 10.1016/S0022-2836(05)80360-2 – volume: 6 start-page: 16 issue: 1 year: 2015 ident: CR13 article-title: Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups publication-title: Mob DNA doi: 10.1186/s13100-015-0047-3 – volume: 42 start-page: 263 issue: 1 year: 2016 end-page: 274 ident: CR2 article-title: Stress response of (Linnaeus 1758) when heavily infested by (Boxshall & Bravo 2000) copepodids publication-title: Fish Physiol Biochem doi: 10.1007/s10695-015-0134-x – volume: 6 start-page: 23887 year: 2016 ident: CR18 article-title: Reverse genetics in high throughput: rapid generation of complete negative strand RNA virus cDNA clones and recombinant viruses thereof publication-title: Sci Rep doi: 10.1038/srep23887 – volume: 6 start-page: e1001191 issue: 11 year: 2010 ident: CR6 article-title: Endogenous viral elements in animal genomes publication-title: PLoS Genet doi: 10.1371/journal.pgen.1001191 – volume: 65 start-page: 251 issue: 1 year: 2012 end-page: 258 ident: CR9 article-title: Phylogeny, integration and expression of sigma virus-like genes in publication-title: Mol Phylogenet Evol doi: 10.1016/j.ympev.2012.06.008 – volume: 25 start-page: 1307 issue: 7 year: 2008 ident: 3768_CR33 publication-title: Mol Biol Evol doi: 10.1093/molbev/msn067 – volume: 13 start-page: 283 issue: 4 year: 2012 ident: 3768_CR10 publication-title: Nat Rev Genet doi: 10.1038/nrg3199 – volume: 6 start-page: 16 issue: 1 year: 2015 ident: 3768_CR13 publication-title: Mob DNA doi: 10.1186/s13100-015-0047-3 – volume: 6 start-page: 23887 year: 2016 ident: 3768_CR18 publication-title: Sci Rep doi: 10.1038/srep23887 – volume: 132 start-page: 86 issue: 1 year: 2008 ident: 3768_CR22 publication-title: Virus Res doi: 10.1016/j.virusres.2007.10.018 – volume: 79 start-page: 6781 issue: 11 year: 2005 ident: 3768_CR24 publication-title: J Virol doi: 10.1128/JVI.79.11.6781-6790.2005 – volume: 104 start-page: 341 issue: 3 year: 2012 ident: 3768_CR1 publication-title: Prev Vet Med doi: 10.1016/j.prevetmed.2011.12.002 – volume: 540 start-page: 539 issue: 7634 year: 2016 ident: 3768_CR5 publication-title: Nature doi: 10.1038/nature20167 – volume: 9 start-page: e112517 issue: 11 year: 2014 ident: 3768_CR15 publication-title: PLoS One doi: 10.1371/journal.pone.0112517 – volume: 160 start-page: 206 issue: 1 year: 2011 ident: 3768_CR26 publication-title: Virus Res doi: 10.1016/j.virusres.2011.06.021 – volume: 479–480 start-page: 26 year: 2015 ident: 3768_CR12 publication-title: Virology doi: 10.1016/j.virol.2015.02.011 – volume: 399 start-page: 98 issue: 1 year: 2010 ident: 3768_CR27 publication-title: Virology doi: 10.1016/j.virol.2009.12.013 – volume: 71 start-page: 1153 issue: 5 year: 1990 ident: 3768_CR30 publication-title: J Gen Virol doi: 10.1099/0022-1317-71-5-1153 – volume: 29 start-page: 226 year: 2011 ident: 3768_CR8 publication-title: Mol Biol Evol – volume: 10 start-page: 368 issue: 4 year: 2011 ident: 3768_CR7 publication-title: Cell Host Microbe doi: 10.1016/j.chom.2011.09.002 – volume: 30 start-page: 1312 issue: 9 year: 2014 ident: 3768_CR32 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu033 – volume: 65 start-page: 251 issue: 1 year: 2012 ident: 3768_CR9 publication-title: Mol Phylogenet Evol doi: 10.1016/j.ympev.2012.06.008 – volume: 92 start-page: 2160 issue: 9 year: 2011 ident: 3768_CR28 publication-title: J Gen Virol doi: 10.1099/vir.0.026120-0 – volume: 76 start-page: 4679 issue: 10 year: 2002 ident: 3768_CR20 publication-title: J Virol doi: 10.1128/JVI.76.10.4679-4687.2002 – volume: 4 start-page: e05378 year: 2015 ident: 3768_CR4 publication-title: eLife doi: 10.7554/eLife.05378 – volume: 6 start-page: 2129 issue: 8 year: 2014 ident: 3768_CR11 publication-title: Genome Biol Evol doi: 10.1093/gbe/evu163 – volume: 155 start-page: 112 issue: 1 year: 2011 ident: 3768_CR29 publication-title: Virus Res doi: 10.1016/j.virusres.2010.09.007 – volume: 162 start-page: 110 issue: 1 year: 2011 ident: 3768_CR25 publication-title: Virus Res doi: 10.1016/j.virusres.2011.09.004 – volume: 215 start-page: 403 issue: 3 year: 1990 ident: 3768_CR16 publication-title: J Mol Biol doi: 10.1016/S0022-2836(05)80360-2 – volume: 11 start-page: e1004664 issue: 2 year: 2015 ident: 3768_CR23 publication-title: PLoS Pathog doi: 10.1371/journal.ppat.1004664 – volume: 25 start-page: 1972 issue: 15 year: 2009 ident: 3768_CR31 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp348 – volume: 41 start-page: 95 year: 1999 ident: 3768_CR17 publication-title: Nucleic Acids Symp Ser – volume: 6 start-page: e1001191 issue: 11 year: 2010 ident: 3768_CR6 publication-title: PLoS Genet doi: 10.1371/journal.pgen.1001191 – volume: 44 start-page: 219 issue: 4 year: 2016 ident: 3768_CR14 publication-title: Biologicals doi: 10.1016/j.biologicals.2016.04.004 – volume: 147 start-page: 17 issue: 1 year: 2010 ident: 3768_CR21 publication-title: Virus Res doi: 10.1016/j.virusres.2009.09.013 – volume: 42 start-page: 263 issue: 1 year: 2016 ident: 3768_CR2 publication-title: Fish Physiol Biochem doi: 10.1007/s10695-015-0134-x – volume: 75 start-page: 1889 issue: Pt 8 year: 1994 ident: 3768_CR19 publication-title: J Gen Virol doi: 10.1099/0022-1317-75-8-1889 – volume: 420 start-page: 126 year: 2014 ident: 3768_CR3 publication-title: Aquaculture doi: 10.1016/j.aquaculture.2013.10.016 – volume: 7 start-page: 14030 issue: 1 year: 2017 ident: 3768_CR34 publication-title: Sci Rep doi: 10.1038/s41598-017-14282-3 |
| SSID | ssj0003035 |
| Score | 2.2578688 |
| Snippet | We have determined the complete genome sequence of a new rhabdovirus, tentatively named Caligus rogercresseyi rhabdovirus Ch01 (CrRV-Ch01), which was found in... |
| SourceID | pubmedcentral proquest pubmed crossref springer |
| SourceType | Open Access Repository Aggregation Database Index Database Enrichment Source Publisher |
| StartPage | 1657 |
| SubjectTerms | Biomedical and Life Sciences Biomedicine Brief Report Caligus rogercresseyi Chile coasts Crustaceans farmed fish Fish genome Genomes Infectious Diseases Lepeophtheirus salmonis Medical Microbiology Norway Nucleotide sequence nucleotide sequences parasites Phylogeny proteins Rhabdoviridae Salmo salar Salmon Virology viruses |
| SummonAdditionalLinks | – databaseName: Health & Medical Collection dbid: 7X7 link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1LbxMxELagCIkL4k1KQUbiwMvC-_CufUJVRFUhwaFQlNvK60ezUrobNkml9q_x55jxPqpQkVMU2ePYmRnvt57xN4S8wWBZJnzCOLcYZhSCaRV5JkrNI6usTXK84Pzte3Z8mn6diVl_4Lbq0yqHPTFs1LYxeEb-KSQTREhb-Xn5m2HVKIyu9iU0bpM7SF2GVp3PxhcusN-uwCa8sjOZcTlENXkgEc1D2ppEF5Psavu5dANs3syZ_CdwGp5HRw_I_R5I0sNO8w_JLVc_Ine70pKXj8kf0D8N-eKAiikysZ47OuRN08bTaXvyi03nPPpINQVsTc8d1gbBJsCEtDv4oCdzXdrmomorqx2t6tCGdOGY6mUoXmlZNpbiDa-zzYq2DczUBD7yy4ouu6tNtKlhuBZWRQ_XC9AkCK70Av5Q-vYHfuI33b7D4ZFp2T0hp0dffk6PWV-ogRmRqTUzHlQjS5tbrXKMo8ZJbhVgM62EM9wkQmbGgOubFAxXaJ14x73LUie4T2GHe0r26qZ2zwmVCsYQSkuTArbQcem88Tr2JcjE8AMTwgc1FaZnMcdiGoti5F8Omi1AswVqtriakPejyLKj8NjV-WDQfdF786q4tr0JeT02gx9icEXXrtl0fVIJcC3f0QcGATiqRDIhzzpzGmcUqzQVSoJ0vmVoYwfkAd9uqat54AMXSsgoBckPg0leT_2_C93fvdAX5F6MzhHOmw7I3rrduJcAv9blq-BjfwGx0S86 priority: 102 providerName: ProQuest |
| Title | The complete genome sequence of CrRV-Ch01, a new member of the family Rhabdoviridae in the parasitic copepod Caligus rogercresseyi present on farmed Atlantic salmon (Salmo salar) in Chile |
| URI | https://link.springer.com/article/10.1007/s00705-018-3768-z https://www.ncbi.nlm.nih.gov/pubmed/29445987 https://www.proquest.com/docview/2002116148 https://www.proquest.com/docview/2002481027 https://www.proquest.com/docview/2116929953 https://pubmed.ncbi.nlm.nih.gov/PMC5958147 |
| Volume | 163 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV3da9swEBdry2Avo_tsti5osId9GfwhWdJjYpKVjYWRLSN7MrIsL4HUDk5SaP-1_XO789dIuxX2YhF0p8jcnXz23f2OkFcYLAt5Fjium2KYkXNHKy9zeKJdL1VpGggscP48Cc9m7OOczxuwaKyFuRa_R7BPUaWXSTQF6VwdkCPuBQK7NERh1B26cBLzOmDAHBm6sg1g_m2J_UfQDb_yZnrktRhp9egZH5P7jc9IB7WQH5A7Nn9I7tZdJC8fkV8galqlhoMDTBF09dzSNkWaFhmNyul3J1q43nuqKbjR9NxiGxCcAveP1t846HShk7S4WJbLVFu6zKs5RAbHrC5DsXplXaQUi7l-7ja0LGCnpoIev1zSdV3FRIsclivhruhguwKhAeNGr0DV6euvOOIvXb7B5RFU2T4ms_HoW3TmND0ZHMNDtXVMBm-MMklFqpXAkKkfiFSBG6YVt8Y1AZehMWDlhoGOcq2DzLqZDZnlbsbgMHtCDvMityeESgVrcKWlYeBGaD-xmcm0nyXA48Mf9Ijbiik2DWA59s1YxR3UciXZGCQbo2Tjqx5527Gsa7SO24hPW9nHjeFu4ipnxUN01B552U2DyWEcRee22NU0TIJnJm6hgUXA81Q86JGntTp1O_IVY1xJ4BZ7itYRIOT3_ky-XFTQ31xx6THgfNeq5J-t__NGn_0X9XNyz0dbqb40nZLDbbmzL8Dx2iZ9ciDmAq4y8vrkaDAeDic4fvjxaQTjcDT5Mu1XZgnXmT_4DePZL5g |
| linkProvider | Springer Nature |
| linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV3db9MwELfGEIIXxPcKA4wEEl_R0sRO7AeEpsLUsY-HsU17C47t0EhdUtIW1P1R_AP8c9w5Taoy0bc9RZXti927sy--u98R8hKdZRHPQs_3DboZOfeU7GYeT5XfNdKYMMYE54PDqH_CvpzxszXyu8mFwbDKZk90G7UpNd6Rb7lggi7CVn4c_fCwahR6V5sSGrVY7NnZL_hkG3_Y_QT8fRUEO5-Pe31vXlXA0zySE09nQEekJjZKxuj0C8LYSDAklORW-zrkItIa5FQz-Je5UmFm_cxGzHI_Y6COQPcauc5CUE3MTO8tQkrgOOC114J5IvJF40X1HWhp7MLkBKq08C6Wz8FLxu3lGM1_HLXu_Nu5Q27PDVe6XUvaXbJmi3vkRl3Kcnaf_AF5oy4-Haxwisiv55Y2cdq0zGivOjr1egO_-54qCrY8PbdYiwSbwAal9UULPRqo1JQ_8yo3ytK8cG0IT46hZZpiCs2oNBQzyr5Px7QqYaba4Z_PcjqqU6loWQC5ClZFtydDkBwYOFZDYCB9_RWf-EtVb5A8IjvbB-TkSlj4kKwXZWE3CBUSaHCphGZgy6ggtZnOVJClMCaAF3SI37Ap0XPUdCzeMUxavGfH2QQ4myBnk4sOedsOGdWQIas6bza8T-a7xzhZyHqHvGibQe_RmaMKW07rPkyAeRiv6ANEwPyVPOyQR7U4tTMKJGNcChgdLwla2wFxx5dbinzg8Me55KLLYOS7RiQXU__vQh-vXuhzcrN_fLCf7O8e7j0htwJUFHfXtUnWJ9XUPgXTb5I-c_pGyberVvC_r-lsQw |
| linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV3db9MwELfGEGgviO8VBhgJJL6i5cuJ_YDQ1FFtDCY02LS34PiDVuqSkrag7k-Df447p0lVJvq2p6iy72L37uyL7_w7Qp5hsCxhNvJ8X2OYkTFPisB6LJd-oIXWUYoXnD8dJnvH8YdTdrpGfjd3YTCtslkT3UKtS4Vn5NsumSBA2MptO0-L-Lzbezf64WEFKYy0NuU0ahU5MLNf8Pk2fru_C7J-Hoa991-7e968woCnWCImnrLAk-c61VKkGAAMo1QLcCqkYEb5KmI8UQp0VsXwjzMpI2t8a5LYMN_GYJrA9wq5mkYpRxvj3UV6CWwNrI5gxB5PfN5EVH0HYJq6lDmO5s298-U98YKjezFf85-grdsLezfJjbkTS3dqrbtF1kxxm1yry1rO7pA_oHvU5aqDR04RBfbM0CZnm5aWdqujE6_b94M3VFLw6-mZwbok2AT-KK0PXehRX-a6_DmoBloaOihcG0KVY5qZonidZlRqirfLvk_HtCphpMphoc8GdFRfq6JlAewqmBXdmQxBi4BwLIcgQPriCz7xl6xeIntEeTZ3yfGliPAeWS_KwmwSygXwYEJyFYNfI8PcWGVlaHOgCeEFHeI3YsrUHEEdC3kMsxb72Uk2A8lmKNnsvENetSSjGj5kVeetRvbZfCUZZwu975CnbTOsARjYkYUpp3WfmIOrmK7oA0zAFRYs6pD7tTq1IwpFHDPBgTpdUrS2A2KQL7cUg77DImeC8SAGyteNSi6G_t-JPlg90SfkOph29nH_8OAh2QjRTtyx1xZZn1RT8wi8wEn-2JkbJd8u277_AqhXcHk |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=The+complete+genome+sequence+of+CrRV-Ch01%2C+a+new+member+of+the+family+Rhabdoviridae+in+the+parasitic+copepod+Caligus+rogercresseyi+present+on+farmed+Atlantic+salmon+%28Salmo+salar%29+in+Chile&rft.jtitle=Archives+of+virology&rft.au=%C3%98kland%2C+Arnfinn+Lodden&rft.au=Skoge%2C+Renate+Hvidsten&rft.au=Nylund%2C+Are&rft.date=2018-06-01&rft.issn=0304-8608&rft.eissn=1432-8798&rft.volume=163&rft.issue=6&rft.spage=1657&rft.epage=1661&rft_id=info:doi/10.1007%2Fs00705-018-3768-z&rft.externalDBID=n%2Fa&rft.externalDocID=10_1007_s00705_018_3768_z |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0304-8608&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0304-8608&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0304-8608&client=summon |