The core metabolome and root exudation dynamics of three phylogenetically distinct plant species
Root exudates are plant-derived, exported metabolites likely shaping root-associated microbiomes by acting as nutrients and signals. However, root exudation dynamics are unclear and thus also, if changes in exudation are reflected in changes in microbiome structure. Here, we assess commonalities and...
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Published in | Nature communications Vol. 14; no. 1; p. 1649 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
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24.03.2023
Nature Publishing Group Nature Portfolio |
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Abstract | Root exudates are plant-derived, exported metabolites likely shaping root-associated microbiomes by acting as nutrients and signals. However, root exudation dynamics are unclear and thus also, if changes in exudation are reflected in changes in microbiome structure. Here, we assess commonalities and differences between exudates of different plant species, diurnal exudation dynamics, as well as the accompanying methodological aspects of exudate sampling. We find that exudates should be collected for hours rather than days as many metabolite abundances saturate over time. Plant growth in sterile, nonsterile, or sugar-supplemented environments significantly alters exudate profiles. A comparison of
Arabidopsis thaliana
,
Brachypodium distachyon
, and
Medicago truncatula
shoot, root, and root exudate metabolite profiles reveals clear differences between these species, but also a core metabolome for tissues and exudates. Exudate profiles also exhibit a diurnal signature. These findings add to the methodological and conceptual groundwork for future exudate studies to improve understanding of plant-microbe interactions.
Root exudates display a diurnal signature, change with growth environment, and can be divided into a core metabolome common to multiple plant species, and specialized exudates produced by distinct species. |
---|---|
AbstractList | Root exudates are plant-derived, exported metabolites likely shaping root-associated microbiomes by acting as nutrients and signals. However, root exudation dynamics are unclear and thus also, if changes in exudation are reflected in changes in microbiome structure. Here, we assess commonalities and differences between exudates of different plant species, diurnal exudation dynamics, as well as the accompanying methodological aspects of exudate sampling. We find that exudates should be collected for hours rather than days as many metabolite abundances saturate over time. Plant growth in sterile, nonsterile, or sugar-supplemented environments significantly alters exudate profiles. A comparison of
Arabidopsis thaliana
,
Brachypodium distachyon
, and
Medicago truncatula
shoot, root, and root exudate metabolite profiles reveals clear differences between these species, but also a core metabolome for tissues and exudates. Exudate profiles also exhibit a diurnal signature. These findings add to the methodological and conceptual groundwork for future exudate studies to improve understanding of plant-microbe interactions.
Root exudates display a diurnal signature, change with growth environment, and can be divided into a core metabolome common to multiple plant species, and specialized exudates produced by distinct species. Abstract Root exudates are plant-derived, exported metabolites likely shaping root-associated microbiomes by acting as nutrients and signals. However, root exudation dynamics are unclear and thus also, if changes in exudation are reflected in changes in microbiome structure. Here, we assess commonalities and differences between exudates of different plant species, diurnal exudation dynamics, as well as the accompanying methodological aspects of exudate sampling. We find that exudates should be collected for hours rather than days as many metabolite abundances saturate over time. Plant growth in sterile, nonsterile, or sugar-supplemented environments significantly alters exudate profiles. A comparison of Arabidopsis thaliana , Brachypodium distachyon , and Medicago truncatula shoot, root, and root exudate metabolite profiles reveals clear differences between these species, but also a core metabolome for tissues and exudates. Exudate profiles also exhibit a diurnal signature. These findings add to the methodological and conceptual groundwork for future exudate studies to improve understanding of plant-microbe interactions. Root exudates are plant-derived, exported metabolites likely shaping root-associated microbiomes by acting as nutrients and signals. However, root exudation dynamics are unclear and thus also, if changes in exudation are reflected in changes in microbiome structure. Here, we assess commonalities and differences between exudates of different plant species, diurnal exudation dynamics, as well as the accompanying methodological aspects of exudate sampling. We find that exudates should be collected for hours rather than days as many metabolite abundances saturate over time. Plant growth in sterile, nonsterile, or sugar-supplemented environments significantly alters exudate profiles. A comparison of Arabidopsis thaliana, Brachypodium distachyon, and Medicago truncatula shoot, root, and root exudate metabolite profiles reveals clear differences between these species, but also a core metabolome for tissues and exudates. Exudate profiles also exhibit a diurnal signature. These findings add to the methodological and conceptual groundwork for future exudate studies to improve understanding of plant-microbe interactions. Root exudates display a diurnal signature, change with growth environment, and can be divided into a core metabolome common to multiple plant species, and specialized exudates produced by distinct species. Root exudates are plant-derived, exported metabolites likely shaping root-associated microbiomes by acting as nutrients and signals. However, root exudation dynamics are unclear and thus also, if changes in exudation are reflected in changes in microbiome structure. Here, we assess commonalities and differences between exudates of different plant species, diurnal exudation dynamics, as well as the accompanying methodological aspects of exudate sampling. We find that exudates should be collected for hours rather than days as many metabolite abundances saturate over time. Plant growth in sterile, nonsterile, or sugar-supplemented environments significantly alters exudate profiles. A comparison of Arabidopsis thaliana, Brachypodium distachyon, and Medicago truncatula shoot, root, and root exudate metabolite profiles reveals clear differences between these species, but also a core metabolome for tissues and exudates. Exudate profiles also exhibit a diurnal signature. These findings add to the methodological and conceptual groundwork for future exudate studies to improve understanding of plant-microbe interactions.Root exudates display a diurnal signature, change with growth environment, and can be divided into a core metabolome common to multiple plant species, and specialized exudates produced by distinct species. |
ArticleNumber | 1649 |
Author | Sasse, Joelle McLaughlin, Sarah Zhalnina, Kateryna Kosina, Suzanne Northen, Trent R. |
Author_xml | – sequence: 1 givenname: Sarah surname: McLaughlin fullname: McLaughlin, Sarah organization: Lawrence Berkeley National Laboratory, Environmental Genomics and Systems Biology, Institute for Plant and Microbial Biology, University of Zurich – sequence: 2 givenname: Kateryna orcidid: 0000-0002-1893-1888 surname: Zhalnina fullname: Zhalnina, Kateryna organization: Lawrence Berkeley National Laboratory, Environmental Genomics and Systems Biology – sequence: 3 givenname: Suzanne orcidid: 0000-0003-2885-1248 surname: Kosina fullname: Kosina, Suzanne organization: Lawrence Berkeley National Laboratory, Environmental Genomics and Systems Biology – sequence: 4 givenname: Trent R. orcidid: 0000-0001-8404-3259 surname: Northen fullname: Northen, Trent R. email: trnorthen@lbl.gov organization: Lawrence Berkeley National Laboratory, Environmental Genomics and Systems Biology, DOE Joint Genome Institute, Lawrence Berkeley National Laboratory – sequence: 5 givenname: Joelle orcidid: 0000-0001-5705-9888 surname: Sasse fullname: Sasse, Joelle email: jschlaepfer@botinst.uzh.ch organization: Lawrence Berkeley National Laboratory, Environmental Genomics and Systems Biology, DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Institute for Plant and Microbial Biology, University of Zurich |
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Snippet | Root exudates are plant-derived, exported metabolites likely shaping root-associated microbiomes by acting as nutrients and signals. However, root exudation... Abstract Root exudates are plant-derived, exported metabolites likely shaping root-associated microbiomes by acting as nutrients and signals. However, root... Root exudates display a diurnal signature, change with growth environment, and can be divided into a core metabolome common to multiple plant species, and... |
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SubjectTerms | 140/58 631/326/2565/2134 631/449/1870 631/449/2667 Alfalfa Arabidopsis - genetics Arabidopsis - metabolism Diurnal Exudates Exudation Flowers & plants Humanities and Social Sciences Metabolites Metabolome Microbiomes Microbiota multidisciplinary Nutrients Phylogeny Plant Exudates - metabolism Plant growth Plant Roots - metabolism Plant species Plants Roots Science Science (multidisciplinary) Soil ecology Species |
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Title | The core metabolome and root exudation dynamics of three phylogenetically distinct plant species |
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