Geographical and Tick-Dependent Distribution of Flavi-Like Alongshan and Yanggou Tick Viruses in Russia
The genus Flavivirus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA polymerase NS5 and RNA helicase-protease NS3. This group includes such viruses as Jingmen tick virus, Alongshan virus, Yanggou tick virus and others...
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| Published in | Viruses Vol. 13; no. 3; p. 458 |
|---|---|
| Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Switzerland
MDPI AG
11.03.2021
MDPI |
| Subjects | |
| Online Access | Get full text |
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| Abstract | The genus Flavivirus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA polymerase NS5 and RNA helicase-protease NS3. This group includes such viruses as Jingmen tick virus, Alongshan virus, Yanggou tick virus and others. We detected the Yanggou tick virus in Dermacentor nuttalli and Dermacentor marginatus ticks in two neighbouring regions of Russia. The virus prevalence ranged from 0.5% to 8.0%. We detected RNA of the Alongshan virus in 44 individuals or pools of various tick species in eight regions of Russia. The virus prevalence ranged from 0.6% to 7.8%. We demonstrated the successful replication of the Yanggou tick virus and Alongshan virus in IRE/CTVM19 and HAE/CTVM8 tick cell lines without a cytopathic effect. According to the phylogenetic analysis, we divided the Alongshan virus into two groups: an Ixodes persulcatus group and an Ixodes ricinus group. In addition, the I. persulcatus group can be divided into European and Asian subgroups. We found amino acid signatures specific to the I. ricinus and I. persulcatus groups and also distinguished between the European and Asian subgroups of the I. persulcatus group. |
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| AbstractList | The genus Flavivirus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA polymerase NS5 and RNA helicase-protease NS3. This group includes such viruses as Jingmen tick virus, Alongshan virus, Yanggou tick virus and others. We detected the Yanggou tick virus in Dermacentor nuttalli and Dermacentor marginatus ticks in two neighbouring regions of Russia. The virus prevalence ranged from 0.5% to 8.0%. We detected RNA of the Alongshan virus in 44 individuals or pools of various tick species in eight regions of Russia. The virus prevalence ranged from 0.6% to 7.8%. We demonstrated the successful replication of the Yanggou tick virus and Alongshan virus in IRE/CTVM19 and HAE/CTVM8 tick cell lines without a cytopathic effect. According to the phylogenetic analysis, we divided the Alongshan virus into two groups: an Ixodes persulcatus group and an Ixodes ricinus group. In addition, the I. persulcatus group can be divided into European and Asian subgroups. We found amino acid signatures specific to the I. ricinus and I. persulcatus groups and also distinguished between the European and Asian subgroups of the I. persulcatus group. The genus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA polymerase NS5 and RNA helicase-protease NS3. This group includes such viruses as Jingmen tick virus, Alongshan virus, Yanggou tick virus and others. We detected the Yanggou tick virus in and ticks in two neighbouring regions of Russia. The virus prevalence ranged from 0.5% to 8.0%. We detected RNA of the Alongshan virus in 44 individuals or pools of various tick species in eight regions of Russia. The virus prevalence ranged from 0.6% to 7.8%. We demonstrated the successful replication of the Yanggou tick virus and Alongshan virus in IRE/CTVM19 and HAE/CTVM8 tick cell lines without a cytopathic effect. According to the phylogenetic analysis, we divided the Alongshan virus into two groups: an group and an group. In addition, the group can be divided into European and Asian subgroups. We found amino acid signatures specific to the and groups and also distinguished between the European and Asian subgroups of the group. The genus Flavivirus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA polymerase NS5 and RNA helicase-protease NS3. This group includes such viruses as Jingmen tick virus, Alongshan virus, Yanggou tick virus and others. We detected the Yanggou tick virus in Dermacentor nuttalli and Dermacentor marginatus ticks in two neighbouring regions of Russia. The virus prevalence ranged from 0.5% to 8.0%. We detected RNA of the Alongshan virus in 44 individuals or pools of various tick species in eight regions of Russia. The virus prevalence ranged from 0.6% to 7.8%. We demonstrated the successful replication of the Yanggou tick virus and Alongshan virus in IRE/CTVM19 and HAE/CTVM8 tick cell lines without a cytopathic effect. According to the phylogenetic analysis, we divided the Alongshan virus into two groups: an Ixodes persulcatus group and an Ixodes ricinus group. In addition, the I. persulcatus group can be divided into European and Asian subgroups. We found amino acid signatures specific to the I. ricinus and I. persulcatus groups and also distinguished between the European and Asian subgroups of the I. persulcatus group.The genus Flavivirus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA polymerase NS5 and RNA helicase-protease NS3. This group includes such viruses as Jingmen tick virus, Alongshan virus, Yanggou tick virus and others. We detected the Yanggou tick virus in Dermacentor nuttalli and Dermacentor marginatus ticks in two neighbouring regions of Russia. The virus prevalence ranged from 0.5% to 8.0%. We detected RNA of the Alongshan virus in 44 individuals or pools of various tick species in eight regions of Russia. The virus prevalence ranged from 0.6% to 7.8%. We demonstrated the successful replication of the Yanggou tick virus and Alongshan virus in IRE/CTVM19 and HAE/CTVM8 tick cell lines without a cytopathic effect. According to the phylogenetic analysis, we divided the Alongshan virus into two groups: an Ixodes persulcatus group and an Ixodes ricinus group. In addition, the I. persulcatus group can be divided into European and Asian subgroups. We found amino acid signatures specific to the I. ricinus and I. persulcatus groups and also distinguished between the European and Asian subgroups of the I. persulcatus group. The genus Flavivirus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA polymerase NS5 and RNA helicase-protease NS3. This group includes such viruses as Jingmen tick virus, Alongshan virus, Yanggou tick virus and others. We detected the Yanggou tick virus in Dermacentor nuttalli and Dermacentor marginatus ticks in two neighbouring regions of Russia. The virus prevalence ranged from 0.5% to 8.0%. We detected RNA of the Alongshan virus in 44 individuals or pools of various tick species in eight regions of Russia. The virus prevalence ranged from 0.6% to 7.8%. We demonstrated the successful replication of the Yanggou tick virus and Alongshan virus in IRE/CTVM19 and HAE/CTVM8 tick cell lines without a cytopathic effect. According to the phylogenetic analysis, we divided the Alongshan virus into two groups: an Ixodes persulcatus group and an Ixodes ricinus group. In addition, the I. persulcatus group can be divided into European and Asian subgroups. We found amino acid signatures specific to the I. ricinus and I. persulcatus groups and also distinguished between the European and Asian subgroups of the I. persulcatus group. |
| Author | Karganova, Galina G. Bazarova, Galina K. Luchinina, Svetlana V. Shamsutdinov, Anton F. Belova, Oxana A. Rozhdestvenskiy, Evgeniy N. Morozkin, Evgeny S. Solomashchenko, Nataliya I. Karan, Lyudmila S. Kovalchuk, Irina V. Purmak, Kristina A. Romanenko, Evgeniya N. Polienko, Alexandra E. Kholodilov, Ivan S. Oorzhak, Natalia D. Trifonov, Vladimir A. Zhurenkova, Olga B. Gushchin, Vladimir A. Medvedev, Sergey G. Panjukova, Elena V. Litov, Alexander G. Nafeev, Alexander A. Chernokhaeva, Liubov L. Yakovlev, Alexander S. Ivannikova, Anna Y. Bell-Sakyi, Lesley Volchev, Evgenii G. Makenov, Marat T. Vovkotech, Pavel G. Klimentov, Alexander S. Chernetsov, Nikita Khaisarova, Anna N. Bespyatova, Liubov A. Khalin, Alexei V. Aibulatov, Sergey V. Gmyl, Larissa V. Saryglar, Anna A. Bugmyrin, Sergey V. Shchetinin, Alexey M. |
| AuthorAffiliation | 11 Laboratory of Biochemistry, “Chumakov Institute of Poliomyelitis and Viral Encephalitides” FSBSI “Chumakov FSC R&D IBP RAS”, 108819 Moscow, Russia; aklimentov@mail.ru 20 Kazan Scientific Research Institute of Epidemiology and Microbiology of Rospotrebnadzor, 420015 Kazan, Russia; shamsutdinov2006@yandex.com (A.F.S.); vtr-08@mail.ru (V.A.T.) 13 Office of Rospotrebnadzor in the Stavropol Territory, 355008 Stavropol, Russia; kovalchuk_IV@26.rospotrebnadzor.ru (I.V.K.); sni@fbuz26.ru (N.I.S.) 1 Laboratory of Biology of Arboviruses, “Chumakov Institute of Poliomyelitis and Viral Encephalitides” FSBSI “Chumakov FSC R&D IBP RAS”, 108819 Moscow, Russia; ivan-kholodilov@bk.ru (I.S.K.); mikasusha@bk.ru (O.A.B.); novosti-wxo@yandex.ru (A.G.L.); strannotut@gmail.com (A.Y.I.); dec151ll@mail.ru (L.L.C.); lvgmyl@mail.ru (L.V.G.); polienko.ae@yandex.ru (A.E.P.); alex-montreal@yandex.ru (A.S.Y.) 16 Infectious Disease Hospital, 667003 Kyzyl, Russia; natalia.oorzhak@yandex.ru (N.D.O.); anna_kyzyl@mail.ru |
| AuthorAffiliation_xml | – name: 5 Laboratory of Bacteriology, Altai Antiplague Station of Rospotrebnadzor, 649000 Gorno-Altaisk, Russia; altai-chuma@mail.ru – name: 9 Department of Vertebrate Zoology, St. Petersburg State University, 199034 St. Petersburg, Russia – name: 11 Laboratory of Biochemistry, “Chumakov Institute of Poliomyelitis and Viral Encephalitides” FSBSI “Chumakov FSC R&D IBP RAS”, 108819 Moscow, Russia; aklimentov@mail.ru – name: 14 Stavropol State Medical University, 355017 Stavropol, Russia – name: 21 Kazan State Medical Academy—Branch Campus of the FSBEI FPE «Russian Medical Academy of Continuous Postgraduate Education» of the Ministry of Healthcare of the Russian Federation, 420012 Kazan, Russia – name: 20 Kazan Scientific Research Institute of Epidemiology and Microbiology of Rospotrebnadzor, 420015 Kazan, Russia; shamsutdinov2006@yandex.com (A.F.S.); vtr-08@mail.ru (V.A.T.) – name: 3 Pathogenic Microorganisms Variability Laboratory, Gamaleya Federal Research Centre for Epidemiology and Microbiology, Ministry of Health of the Russian Federation, 123098 Moscow, Russia; shchetinin.alexey@yandex.ru (A.M.S.); wowaniada@gmail.com (V.A.G.) – name: 19 Director, Altai Antiplague Station of Rospotrebnadzor, 649000 Gorno-Altaisk, Russia; chumagorny@mail.ru – name: 1 Laboratory of Biology of Arboviruses, “Chumakov Institute of Poliomyelitis and Viral Encephalitides” FSBSI “Chumakov FSC R&D IBP RAS”, 108819 Moscow, Russia; ivan-kholodilov@bk.ru (I.S.K.); mikasusha@bk.ru (O.A.B.); novosti-wxo@yandex.ru (A.G.L.); strannotut@gmail.com (A.Y.I.); dec151ll@mail.ru (L.L.C.); lvgmyl@mail.ru (L.V.G.); polienko.ae@yandex.ru (A.E.P.); alex-montreal@yandex.ru (A.S.Y.) – name: 16 Infectious Disease Hospital, 667003 Kyzyl, Russia; natalia.oorzhak@yandex.ru (N.D.O.); anna_kyzyl@mail.ru (A.A.S.) – name: 6 Department of Infection Biology and Microbiomes, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool L3 5RF, UK; l.bell-sakyi@liverpool.ac.uk – name: 17 Institute of Biology, Komi Science Center, Ural Branch of Russian Academy of Sciences, 167982 Syktyvkar, Russia; panjukova@ib.komisc.ru – name: 8 Laboratory of Ornithology, Zoological Institute, Russian Academy of Sciences, 199034 St. Petersburg, Russia; nikita.chernetsov@gmail.com – name: 4 Laboratory of Parasitic Arthropods, Zoological Institute, Russian Academy of Sciences, 199034 St. Petersburg, Russia; s.v.aibulatov@gmail.com (S.V.A.); hallisimo@yandex.ru (A.V.K.); smedvedev@zin.ru (S.G.M.) – name: 12 Laboratory of Biology and Indication of Arboviruses, Department Ivanovsky Institute of Virology, Gamaleya Federal Research Centre for Epidemiology and Microbiology, Ministry of Health of the Russian Federation, 123098 Moscow, Russia – name: 22 Institute of Living Systems Immanuel Kant Baltic Federal University, 236041 Kaliningrad, Russia; e.volchev@hotmail.com – name: 7 Laboratory for Animal and Plant Parasitology, Institute of Biology of Karelian Research Centre, Russian Academy of Sciences (IB KarRC RAS), 185910 Petrozavodsk, Russia; gamasina@mail.ru (L.A.B.); sbugmyr@mail.ru (S.V.B.) – name: 10 Center for Hygiene and Epidemiology in the Ulyanovsk Region, 432005 Ulyanovsk, Russia; an_stolyarova@mail.ru (A.N.K.); nafeev@mail.ru (A.A.N.); vovkotech87@mail.ru (P.G.V.) – name: 23 Faculty of Biology, Lomonosov MSU, 119991 Moscow, Russia – name: 2 Department of Molecular Diagnostics and Epidemiology, Central Research Institute of Epidemiology, 111123 Moscow, Russia; evgeny.morozkin@mail.ru (E.S.M.); makenov@cmd.su (M.T.M.); zhurenkova@cmd.su (O.B.Z.); karan@cmd.su (L.S.K.) – name: 13 Office of Rospotrebnadzor in the Stavropol Territory, 355008 Stavropol, Russia; kovalchuk_IV@26.rospotrebnadzor.ru (I.V.K.); sni@fbuz26.ru (N.I.S.) – name: 15 Office of Rospotrebnadzor in the Chelyabinsk Region, 454092 Chelyabinsk, Russia; luchinina_sv@74.rospotrebnadzor.ru – name: 18 FBIH “Center for Hygiene and Epidemiology in the Stavropol kray”, 355008 Stavropol, Russia; kristypurmak.ru@mail.ru (K.A.P.); poliost@fbuz26.ru (E.N.R.) – name: 24 Institute for Translational Medicine and Biotechnology, Sechenov University, 119146 Moscow, Russia |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33799742$$D View this record in MEDLINE/PubMed |
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| Keywords | Yanggou tick virus Jingmen tick virus segmented virus amino acid substitutions Alongshan virus flavi-like virus tick cell line Flavivirus |
| Language | English |
| License | https://creativecommons.org/licenses/by/4.0 Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
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| Snippet | The genus Flavivirus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA... The genus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA polymerase NS5 and... The genus Flavivirus includes related, unclassified segmented flavi-like viruses, two segments of which have homology with flavivirus RNA-dependent RNA... |
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| SubjectTerms | Alongshan virus Amino Acid Substitution - genetics Amino acids Animals Arachnid Vectors - virology Cell Line Cell lines Culicidae - virology cytopathogenicity Deoxyribonucleic acid Dermacentor - virology Dermacentor marginatus DNA DNA helicase DNA-directed RNA polymerase flavi-like virus Flaviviridae - genetics Flaviviridae - isolation & purification Flaviviridae Infections - epidemiology Flavivirus Genomes Homology Infections Ixodes - virology Ixodes persulcatus Ixodes ricinus Jingmen tick virus Laboratories Mosquitoes Phylogenetics Phylogeny Reading RNA RNA helicase RNA Helicases - genetics RNA polymerase RNA viruses RNA, Viral - genetics RNA-directed RNA polymerase Russia Russia - epidemiology segmented virus Serine Endopeptidases - genetics ticks Viral Nonstructural Proteins - genetics Viruses Yanggou tick virus |
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| Title | Geographical and Tick-Dependent Distribution of Flavi-Like Alongshan and Yanggou Tick Viruses in Russia |
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