Soybean Thrips (Thysanoptera: Thripidae) Harbor Highly Diverse Populations of Arthropod, Fungal and Plant Viruses

Soybean thrips (Neohydatothrips variabilis) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants. To determine which other viruses are associated with soybean thrips, the metatranscriptome of soybean thrips, collec...

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Published inViruses Vol. 12; no. 12; p. 1376
Main Authors Thekke-Veetil, Thanuja, Lagos-Kutz, Doris, McCoppin, Nancy K., Hartman, Glen L., Ju, Hye-Kyoung, Lim, Hyoun-Sub, Domier, Leslie. L.
Format Journal Article
LanguageEnglish
Published Switzerland MDPI AG 01.12.2020
MDPI
Subjects
Animals
Arthropods
China
Computational Biology - methods
Coverage
Disease Susceptibility
Disease Vectors
Double-stranded RNA
dsRNA viruses
Fungi
Genome, Viral
Genomes
Glycine max
Glycine max - microbiology
Glycine max - parasitology
Glycine max - virology
Host plants
Host-Parasite Interactions - genetics
Host-Pathogen Interactions - genetics
insect vectors
invertebrate viruses
mycoviruses
Neohydatothrips variabilis
new species
Nucleotide sequence
nucleotide sequences
Phylogenetics
Phylogeny
Plant Diseases - genetics
Plant Diseases - microbiology
Plant Diseases - parasitology
Plant Diseases - virology
Plant viruses
population distribution
positive sense, single-stranded RNA viruses
RNA polymerase
RNA Viruses - genetics
Single-stranded DNA
soybean thrips
Soybean vein necrosis orthotospovirus
Soybeans
species diversity
ssDNA viruses
transcriptome
vector-enabled transcriptomics
Vectors
viral genome
viral metatranscriptomics
Viruses
Iowa
United States > US
Illinois
Missouri
Louisiana
Minnesota
Kansas
Wisconsin
Michigan
China
vector-enabled transcriptomics
viral metatranscriptomics
Neohydatothrips variabilis
soybean thrips
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Abstract Soybean thrips (Neohydatothrips variabilis) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants. To determine which other viruses are associated with soybean thrips, the metatranscriptome of soybean thrips, collected by the Midwest Suction Trap Network during 2018, was analyzed. Contigs assembled from the data revealed a remarkable diversity of virus-like sequences. Of the 181 virus-like sequences identified, 155 were novel and associated primarily with taxa of arthropod-infecting viruses, but sequences similar to plant and fungus-infecting viruses were also identified. The novel viruses were predicted to have positive-sense RNA, negative-stranded RNA, double-stranded RNA, and single-stranded DNA genomes. The assembled sequences included 100 contigs that represented at least 95% coverage of a virus genome or genome segment. Sequences represented 12 previously described arthropod viruses including eight viruses reported from Hubei Province in China, and 12 plant virus sequences of which six have been previously described. The presence of diverse populations of plant viruses within soybean thrips suggests they feed on and acquire viruses from multiple host plant species that could be transmitted to soybean. Assessment of the virome of soybean thrips provides, for the first time, information on the diversity of viruses present in thrips.
AbstractList Soybean thrips ( Neohydatothrips variabilis ) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants. To determine which other viruses are associated with soybean thrips, the metatranscriptome of soybean thrips, collected by the Midwest Suction Trap Network during 2018, was analyzed. Contigs assembled from the data revealed a remarkable diversity of virus-like sequences. Of the 181 virus-like sequences identified, 155 were novel and associated primarily with taxa of arthropod-infecting viruses, but sequences similar to plant and fungus-infecting viruses were also identified. The novel viruses were predicted to have positive-sense RNA, negative-stranded RNA, double-stranded RNA, and single-stranded DNA genomes. The assembled sequences included 100 contigs that represented at least 95% coverage of a virus genome or genome segment. Sequences represented 12 previously described arthropod viruses including eight viruses reported from Hubei Province in China, and 12 plant virus sequences of which six have been previously described. The presence of diverse populations of plant viruses within soybean thrips suggests they feed on and acquire viruses from multiple host plant species that could be transmitted to soybean. Assessment of the virome of soybean thrips provides, for the first time, information on the diversity of viruses present in thrips.
Soybean thrips (Neohydatothrips variabilis) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants. To determine which other viruses are associated with soybean thrips, the metatranscriptome of soybean thrips, collected by the Midwest Suction Trap Network during 2018, was analyzed. Contigs assembled from the data revealed a remarkable diversity of virus-like sequences. Of the 181 virus-like sequences identified, 155 were novel and associated primarily with taxa of arthropod-infecting viruses, but sequences similar to plant and fungus-infecting viruses were also identified. The novel viruses were predicted to have positive-sense RNA, negative-stranded RNA, double-stranded RNA, and single-stranded DNA genomes. The assembled sequences included 100 contigs that represented at least 95% coverage of a virus genome or genome segment. Sequences represented 12 previously described arthropod viruses including eight viruses reported from Hubei Province in China, and 12 plant virus sequences of which six have been previously described. The presence of diverse populations of plant viruses within soybean thrips suggests they feed on and acquire viruses from multiple host plant species that could be transmitted to soybean. Assessment of the virome of soybean thrips provides, for the first time, information on the diversity of viruses present in thrips.
Soybean thrips (Neohydatothrips variabilis) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants. To determine which other viruses are associated with soybean thrips, the metatranscriptome of soybean thrips, collected by the Midwest Suction Trap Network during 2018, was analyzed. Contigs assembled from the data revealed a remarkable diversity of virus-like sequences. Of the 181 virus-like sequences identified, 155 were novel and associated primarily with taxa of arthropod-infecting viruses, but sequences similar to plant and fungus-infecting viruses were also identified. The novel viruses were predicted to have positive-sense RNA, negative-stranded RNA, double-stranded RNA, and single-stranded DNA genomes. The assembled sequences included 100 contigs that represented at least 95% coverage of a virus genome or genome segment. Sequences represented 12 previously described arthropod viruses including eight viruses reported from Hubei Province in China, and 12 plant virus sequences of which six have been previously described. The presence of diverse populations of plant viruses within soybean thrips suggests they feed on and acquire viruses from multiple host plant species that could be transmitted to soybean. Assessment of the virome of soybean thrips provides, for the first time, information on the diversity of viruses present in thrips.Soybean thrips (Neohydatothrips variabilis) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants. To determine which other viruses are associated with soybean thrips, the metatranscriptome of soybean thrips, collected by the Midwest Suction Trap Network during 2018, was analyzed. Contigs assembled from the data revealed a remarkable diversity of virus-like sequences. Of the 181 virus-like sequences identified, 155 were novel and associated primarily with taxa of arthropod-infecting viruses, but sequences similar to plant and fungus-infecting viruses were also identified. The novel viruses were predicted to have positive-sense RNA, negative-stranded RNA, double-stranded RNA, and single-stranded DNA genomes. The assembled sequences included 100 contigs that represented at least 95% coverage of a virus genome or genome segment. Sequences represented 12 previously described arthropod viruses including eight viruses reported from Hubei Province in China, and 12 plant virus sequences of which six have been previously described. The presence of diverse populations of plant viruses within soybean thrips suggests they feed on and acquire viruses from multiple host plant species that could be transmitted to soybean. Assessment of the virome of soybean thrips provides, for the first time, information on the diversity of viruses present in thrips.
Soybean thrips ( ) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants. To determine which other viruses are associated with soybean thrips, the metatranscriptome of soybean thrips, collected by the Midwest Suction Trap Network during 2018, was analyzed. Contigs assembled from the data revealed a remarkable diversity of virus-like sequences. Of the 181 virus-like sequences identified, 155 were novel and associated primarily with taxa of arthropod-infecting viruses, but sequences similar to plant and fungus-infecting viruses were also identified. The novel viruses were predicted to have positive-sense RNA, negative-stranded RNA, double-stranded RNA, and single-stranded DNA genomes. The assembled sequences included 100 contigs that represented at least 95% coverage of a virus genome or genome segment. Sequences represented 12 previously described arthropod viruses including eight viruses reported from Hubei Province in China, and 12 plant virus sequences of which six have been previously described. The presence of diverse populations of plant viruses within soybean thrips suggests they feed on and acquire viruses from multiple host plant species that could be transmitted to soybean. Assessment of the virome of soybean thrips provides, for the first time, information on the diversity of viruses present in thrips.
Author Ju, Hye-Kyoung
Thekke-Veetil, Thanuja
Hartman, Glen L.
Lim, Hyoun-Sub
Domier, Leslie. L.
Lagos-Kutz, Doris
McCoppin, Nancy K.
AuthorAffiliation 3 Department of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon 300-010, Korea; jhk91113@gmail.com (H.-K.J.); hyounlim@cnu.ac.kr (H.-S.L.)
1 Department of Crop Sciences, University of Illinois, Urbana, IL 61801, USA; tthekke2@illinois.edu
2 Soybean/Maize Germplasm, Pathology, and Genetics Research Unit, United States Department of Agriculture-Agricultural Research Service, Urbana, IL 61801, USA; doris.lagos-kutz@usda.gov (D.L.-K.); nancy.mccoppin@usda.gov (N.K.M.); glen.hartman@usda.gov (G.L.H.)
AuthorAffiliation_xml – name: 3 Department of Applied Biology, College of Agriculture and Life Sciences, Chungnam National University, Daejeon 300-010, Korea; jhk91113@gmail.com (H.-K.J.); hyounlim@cnu.ac.kr (H.-S.L.)
– name: 1 Department of Crop Sciences, University of Illinois, Urbana, IL 61801, USA; tthekke2@illinois.edu
– name: 2 Soybean/Maize Germplasm, Pathology, and Genetics Research Unit, United States Department of Agriculture-Agricultural Research Service, Urbana, IL 61801, USA; doris.lagos-kutz@usda.gov (D.L.-K.); nancy.mccoppin@usda.gov (N.K.M.); glen.hartman@usda.gov (G.L.H.)
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  surname: Lagos-Kutz
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  orcidid: 0000-0002-4943-2547
  surname: Domier
  fullname: Domier, Leslie. L.
BackLink https://www.ncbi.nlm.nih.gov/pubmed/33271916$$D View this record in MEDLINE/PubMed
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Issue 12
Keywords vector-enabled transcriptomics
viral metatranscriptomics
Neohydatothrips variabilis
soybean thrips
Language English
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  year: 2020
  text: 2020-12-01
  day: 01
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SSID ssj0066907
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Snippet Soybean thrips (Neohydatothrips variabilis) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in...
Soybean thrips ( ) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in sensitive soybean plants....
Soybean thrips ( Neohydatothrips variabilis ) are one of the most efficient vectors of soybean vein necrosis virus, which can cause severe necrotic symptoms in...
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SubjectTerms Animals
Arthropods
China
Computational Biology - methods
Coverage
Disease Susceptibility
Disease Vectors
Double-stranded RNA
dsRNA viruses
Fungi
Genome, Viral
Genomes
Glycine max
Glycine max - microbiology
Glycine max - parasitology
Glycine max - virology
Host plants
Host-Parasite Interactions - genetics
Host-Pathogen Interactions - genetics
insect vectors
invertebrate viruses
mycoviruses
Neohydatothrips variabilis
new species
Nucleotide sequence
nucleotide sequences
Phylogenetics
Phylogeny
Plant Diseases - genetics
Plant Diseases - microbiology
Plant Diseases - parasitology
Plant Diseases - virology
Plant viruses
population distribution
positive sense, single-stranded RNA viruses
RNA polymerase
RNA Viruses - genetics
Single-stranded DNA
soybean thrips
Soybean vein necrosis orthotospovirus
Soybeans
species diversity
ssDNA viruses
transcriptome
vector-enabled transcriptomics
Vectors
viral genome
viral metatranscriptomics
Viruses
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Title Soybean Thrips (Thysanoptera: Thripidae) Harbor Highly Diverse Populations of Arthropod, Fungal and Plant Viruses
URI https://www.ncbi.nlm.nih.gov/pubmed/33271916
https://www.proquest.com/docview/2467399478
https://www.proquest.com/docview/2467616758
https://www.proquest.com/docview/2594533397
https://pubmed.ncbi.nlm.nih.gov/PMC7761488
https://doaj.org/article/c1cf880975404b72b9ccd114a8eb94b0
Volume 12
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