MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies - Metwally, Ahmed A.; Yang, Jie; Ascoli, Christian; Dai, Yang; Finn, Patricia W.; Perkins, David L. (Microbiome, 2018)
Keywords: Bacteroides - classification; Bacteroides - isolation & purification; Bifidobacterium - classification; Bifidobacterium - isolation & purification; Differential abundance; Finland; Genetic aspects; Genomics; High-Throughput Nucleotide Sequencing; Humans; Infant; Longitudinal Studies; Metagenomics; Metagenomics - methods; Microbiome; Microbiota (Symbiotic organisms); Physiological aspects; RNA, Ribosomal, 16S; Russia; Smoothing splines; Software; Time series; United States; Metagenomics; Time series; Differential abundance; Smoothing splines; Longitudinal studies; Negative binomial distribution; Microbiome