It's easier to get along with the quiet neighbours
Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins, analysis of human proteomics data by Rappsilber and colleagues (Kustatscher et al , 2017 ) suggests this is the exception not the rule. Rather...
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Published in | Molecular systems biology Vol. 13; no. 9; pp. 943 - n/a |
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Main Author | |
Format | Journal Article |
Language | English |
Published |
London
Nature Publishing Group UK
26.09.2017
EMBO Press John Wiley and Sons Inc Springer Nature |
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Abstract | Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins, analysis of human proteomics data by Rappsilber and colleagues (Kustatscher
et al
,
2017
) suggests this is the exception not the rule. Rather it might either be just something that happens or, in some instances, an epiphenomenon of coordination of expression to enable reduced gene expression noise.
Graphical Abstract
Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this enables protein‐level co‐expression, Rappsilber and colleagues (Kustatscher
et al
,
2017
) report that it is the exception and not the rule. Instead, it might be related to the control of gene expression noise. |
---|---|
AbstractList | Why are neighbouring genes co‐expressed at the
RNA
level? While it is tempting to think that this is to enable coordination of functionally related proteins, analysis of human proteomics data by Rappsilber and colleagues (Kustatscher
et al
,
) suggests this is the exception not the rule. Rather it might either be just something that happens or, in some instances, an epiphenomenon of coordination of expression to enable reduced gene expression noise. Abstract Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins, analysis of human proteomics data by Rappsilber and colleagues (Kustatscher et al, 2017) suggests this is the exception not the rule. Rather it might either be just something that happens or, in some instances, an epiphenomenon of coordination of expression to enable reduced gene expression noise. Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins, analysis of human proteomics data by Rappsilber and colleagues (Kustatscher et al , 2017 ) suggests this is the exception not the rule. Rather it might either be just something that happens or, in some instances, an epiphenomenon of coordination of expression to enable reduced gene expression noise. Graphical Abstract Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this enables protein‐level co‐expression, Rappsilber and colleagues (Kustatscher et al , 2017 ) report that it is the exception and not the rule. Instead, it might be related to the control of gene expression noise. Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins, analysis of human proteomics data by Rappsilber and colleagues (Kustatscher et al, ) suggests this is the exception not the rule. Rather it might either be just something that happens or, in some instances, an epiphenomenon of coordination of expression to enable reduced gene expression noise. Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this enables protein‐level co‐expression, Rappsilber and colleagues (Kustatscher et al, ) report that it is the exception and not the rule. Instead, it might be related to the control of gene expression noise. Why are neighbouring genes co-expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins, analysis of human proteomics data by Rappsilber and colleagues (Kustatscher et al, ) suggests this is the exception not the rule. Rather it might either be just something that happens or, in some instances, an epiphenomenon of coordination of expression to enable reduced gene expression noise. Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins, analysis of human proteomics data by Rappsilber and colleagues (Kustatscher et al , 2017 ) suggests this is the exception not the rule. Rather it might either be just something that happens or, in some instances, an epiphenomenon of coordination of expression to enable reduced gene expression noise. |
Author | Hurst, Laurence D |
AuthorAffiliation | 1 The Milner Centre for Evolution Biology and Biochemistry University of Bath Bath UK |
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Cites_doi | 10.1038/ng2071 10.1093/gbe/evr025 10.1038/ng887 10.1038/ng1111 10.1101/gr.1982804 10.1038/nrg1319 10.1016/j.cels.2016.03.009 10.15252/msb.20177548 10.1093/nar/gku667 10.1371/journal.pbio.0040309 |
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References | Pal, Hurst (CR6) 2003; 33 Hurst, Pal, Lercher (CR3) 2004; 5 Chen, Zhang (CR2) 2016; 2 Lercher, Urrutia, Hurst (CR5) 2002; 31 Raj, Peskin, Tranchina, Vargas, Tyagi (CR7) 2006; 4 Wang, Lercher, Hurst (CR10) 2011; 3 Batada, Hurst (CR1) 2007; 39 Trinklein, Aldred, Hartman, Schroeder, Otillar, Myers (CR9) 2004; 14 Kustatscher, Grabowski, Rappsilber (CR4) 2017; 13 Thevenin, Ein‐Dor, Ozery‐Flato, Shamir (CR8) 2014; 42 2007; 39 2004; 5 2006; 4 2016; 2 2002; 31 2011; 3 2004; 14 2017; 13 2003; 33 2014; 42 28835372 - Mol Syst Biol. 2017 Aug 23;13(8):937. doi: 10.15252/msb.20177548 e_1_2_2_4_1 e_1_2_2_5_1 e_1_2_2_6_1 e_1_2_2_7_1 e_1_2_2_11_1 e_1_2_2_10_1 e_1_2_2_2_1 e_1_2_2_3_1 e_1_2_2_9_1 e_1_2_2_8_1 |
References_xml | – volume: 2 start-page: 347 year: 2016 end-page: 354 ident: CR2 article-title: The genomic landscape of position effects on protein expression level and noise in yeast publication-title: Cell Syst contributor: fullname: Zhang – volume: 31 start-page: 180 year: 2002 end-page: 183 ident: CR5 article-title: Clustering of housekeeping genes provides a unified model of gene order in the human genome publication-title: Nat Genet contributor: fullname: Hurst – volume: 39 start-page: 945 year: 2007 end-page: 949 ident: CR1 article-title: Evolution of chromosome organization driven by selection for reduced gene expression noise publication-title: Nat Genet contributor: fullname: Hurst – volume: 3 start-page: 320 year: 2011 end-page: 331 ident: CR10 article-title: Transcriptional coupling of neighboring genes and gene expression noise: evidence that gene orientation and noncoding transcripts are modulators of noise publication-title: Genome Biol Evol contributor: fullname: Hurst – volume: 13 start-page: 937 year: 2017 ident: CR4 article-title: Pervasive coexpression of spatially proximal genes is buffered at the protein level publication-title: Mol Syst Biol contributor: fullname: Rappsilber – volume: 33 start-page: 392 year: 2003 end-page: 395 ident: CR6 article-title: Evidence for co‐evolution of gene order and recombination rate publication-title: Nat Genet contributor: fullname: Hurst – volume: 42 start-page: 9854 year: 2014 end-page: 9861 ident: CR8 article-title: Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome publication-title: Nucleic Acids Res contributor: fullname: Shamir – volume: 5 start-page: 299 year: 2004 end-page: 310 ident: CR3 article-title: The evolutionary dynamics of eukaryotic gene order publication-title: Nat Rev Genet contributor: fullname: Lercher – volume: 4 start-page: e309 year: 2006 ident: CR7 article-title: Stochastic mRNA synthesis in mammalian cells publication-title: PLoS Biol contributor: fullname: Tyagi – volume: 14 start-page: 62 year: 2004 end-page: 66 ident: CR9 article-title: An abundance of bidirectional promoters in the Human genome publication-title: Genome Res contributor: fullname: Myers – volume: 3 start-page: 320 year: 2011 end-page: 331 article-title: Transcriptional coupling of neighboring genes and gene expression noise: evidence that gene orientation and noncoding transcripts are modulators of noise publication-title: Genome Biol Evol – volume: 13 start-page: 937 year: 2017 article-title: Pervasive coexpression of spatially proximal genes is buffered at the protein level publication-title: Mol Syst Biol – volume: 31 start-page: 180 year: 2002 end-page: 183 article-title: Clustering of housekeeping genes provides a unified model of gene order in the human genome publication-title: Nat Genet – volume: 39 start-page: 945 year: 2007 end-page: 949 article-title: Evolution of chromosome organization driven by selection for reduced gene expression noise publication-title: Nat Genet – volume: 2 start-page: 347 year: 2016 end-page: 354 article-title: The genomic landscape of position effects on protein expression level and noise in yeast publication-title: Cell Syst – volume: 33 start-page: 392 year: 2003 end-page: 395 article-title: Evidence for co‐evolution of gene order and recombination rate publication-title: Nat Genet – volume: 5 start-page: 299 year: 2004 end-page: 310 article-title: The evolutionary dynamics of eukaryotic gene order publication-title: Nat Rev Genet – volume: 42 start-page: 9854 year: 2014 end-page: 9861 article-title: Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome publication-title: Nucleic Acids Res – volume: 4 start-page: e309 year: 2006 article-title: Stochastic mRNA synthesis in mammalian cells publication-title: PLoS Biol – volume: 14 start-page: 62 year: 2004 end-page: 66 article-title: An abundance of bidirectional promoters in the Human genome publication-title: Genome Res – ident: e_1_2_2_2_1 doi: 10.1038/ng2071 – ident: e_1_2_2_11_1 doi: 10.1093/gbe/evr025 – ident: e_1_2_2_6_1 doi: 10.1038/ng887 – ident: e_1_2_2_7_1 doi: 10.1038/ng1111 – ident: e_1_2_2_10_1 doi: 10.1101/gr.1982804 – ident: e_1_2_2_4_1 doi: 10.1038/nrg1319 – ident: e_1_2_2_3_1 doi: 10.1016/j.cels.2016.03.009 – ident: e_1_2_2_5_1 doi: 10.15252/msb.20177548 – ident: e_1_2_2_9_1 doi: 10.1093/nar/gku667 – ident: e_1_2_2_8_1 doi: 10.1371/journal.pbio.0040309 |
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Snippet | Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins,... Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins,... Why are neighbouring genes co-expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related proteins,... Abstract Why are neighbouring genes co‐expressed at the RNA level? While it is tempting to think that this is to enable coordination of functionally related... |
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SubjectTerms | EMBO09 EMBO17 Gene expression News & Views Proteins Proteomics Ribonucleic acid RNA Views |
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Title | It's easier to get along with the quiet neighbours |
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