Genetic variability in the Skyros pony and its relationship with other Greek and foreign horse breeds

In Greece, seven native horse breeds have been identified so far. Among these, the Skyros pony is outstanding through having a distinct phenotype. In the present study, the aim was to assess genetic diversity in this breed, by using different types of genetic loci and available genealogical informat...

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Published inGenetics and molecular biology Vol. 34; no. 1; pp. 68 - 76
Main Authors Bömcke, Elisabeth, Gengler, Nicolas, Cothran, E Gus
Format Journal Article Web Resource
LanguageEnglish
Published Brazil scielo 01.01.2011
Sociedade Brasileira de Genética
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Abstract In Greece, seven native horse breeds have been identified so far. Among these, the Skyros pony is outstanding through having a distinct phenotype. In the present study, the aim was to assess genetic diversity in this breed, by using different types of genetic loci and available genealogical information. Its relationships with the other Greek, as well as foreign, domestic breeds were also investigated. Through microsatellite and pedigree analysis it appeared that the Skyros presented a similar level of genetic diversity to the other European breeds. Nevertheless, comparisons between DNA-based and pedigree-based results revealed that a loss of genetic diversity had probably already occurred before the beginning of breed registration. Tests indicated the possible existence of a recent bottleneck in two of the three main herds of Skyros pony. Nonetheless, relatively high levels of heterozygosity and Polymorphism Information Content indicated sufficient residual genetic variability, probably useful in planning future strategies for breed conservation. Three other Greek breeds were also analyzed. A comparison of these with domestic breeds elsewhere, revealed the closest relationships to be with the Middle Eastern types, whereas the Skyros itself remained isolated, without any close relationship, whatsoever.
AbstractList In Greece, seven native horse breeds have been identified so far. Among these, the Skyros pony is outstanding through having a distinct phenotype. In the present study, the aim was to assess genetic diversity in this breed, by using different types of genetic loci and available genealogical information. Its relationships with the other Greek, as well as foreign, domestic breeds were also investigated. Through microsatellite and pedigree analysis it appeared that the Skyros presented a similar level of genetic diversity to the other European breeds. Nevertheless, comparisons between DNA-based and pedigree-based results revealed that a loss of genetic diversity had probably already occurred before the beginning of breed registration. Tests indicated the possible existence of a recent bottleneck in two of the three main herds of Skyros pony. Nonetheless, relatively high levels of heterozygosity and Polymorphism Information Content indicated sufficient residual genetic variability, probably useful in planning future strategies for breed conservation. Three other Greek breeds were also analyzed. A comparison of these with domestic breeds elsewhere, revealed the closest relationships to be with the Middle Eastern types, whereas the Skyros itself remained isolated, without any close relationship, whatsoever.
Author Bömcke, Elisabeth
Gengler, Nicolas
Cothran, E Gus
AuthorAffiliation 2 F.R.I.A., Brussels, Belgium
3 National Fund for Scientific Research, Brussels, Belgium
4 Animal Genetics Lab., VIBS, CVM, Texas A&M University, College Station, Texas, USA
1 Animal Science Unit, Gembloux Agricultural University, Gembloux, Belgium
AuthorAffiliation_xml – name: 1 Animal Science Unit, Gembloux Agricultural University, Gembloux, Belgium
– name: 4 Animal Genetics Lab., VIBS, CVM, Texas A&M University, College Station, Texas, USA
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– name: Gembloux Agricultural University
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  givenname: Elisabeth
  surname: Bömcke
  fullname: Bömcke, Elisabeth
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  givenname: Nicolas
  surname: Gengler
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  givenname: E Gus
  surname: Cothran
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/21637546$$D View this record in MEDLINE/PubMed
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Issue 1
Keywords horse
pedigree
genetic variation
genetic markers
Language English
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– year: 2000
  publication-title: The Indigenous horse of Greece
  contributor:
    fullname: Alifakiotis, TA
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Snippet In Greece, seven native horse breeds have been identified so far. Among these, the Skyros pony is outstanding through having a distinct phenotype. In the...
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StartPage 68
SubjectTerms Animal Genetics
Animal production & animal husbandry
BIOCHEMISTRY & MOLECULAR BIOLOGY
genetic markers
genetic variation
Genetics & genetic processes
GENETICS & HEREDITY
Génétique & processus génétiques
horse
Life sciences
pedigree
Productions animales & zootechnie
Sciences du vivant
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Title Genetic variability in the Skyros pony and its relationship with other Greek and foreign horse breeds
URI https://www.ncbi.nlm.nih.gov/pubmed/21637546
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Volume 34
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