Insights into the microbiome assembly during different growth stages and storage of strawberry plants

Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage...

Full description

Saved in:
Bibliographic Details
Published inEnvironmental microbiome Vol. 17; no. 1; p. 21
Main Authors Olimi, Expedito, Kusstatscher, Peter, Wicaksono, Wisnu Adi, Abdelfattah, Ahmed, Cernava, Tomislav, Berg, Gabriele
Format Journal Article
LanguageEnglish
Published England BioMed Central Ltd 28.04.2022
BioMed Central
BMC
Subjects
Amplicon sequencing
Analysis
Bacteria
Bacterial communities
Burkholderiaceae
Cultivars
Flowers
Flowers & plants
Food safety
Fragaria ananassa
Fragaria × ananassa
Fruit
Fruit pathogens
Fruits
Fungal communities
Fungi
Growth
Microbiome assembly
Microbiomes
Mycosphaerella
Phyllosphere
Plant growth
Post-harvest decay
Pseudomonadaceae
Rhizosphere
Sphingomonadaceae
Strawberries
United States > US
Fungal communities
Fragaria × ananassa
Microbiome assembly
Amplicon sequencing
Bacterial communities
Fruit pathogens
CLSM
Online AccessGet full text

Cover

Abstract Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches. Strawberry plants carried a highly diverse microbiome, therein the bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), and Burkholderiaceae (11%); and the fungal family Mycosphaerella (45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (10 -10 marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused by Botrytis cinerea decreased the diversity as well, and induced a reduction of potentially beneficial taxa. Our findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe transfer during fruit development and storage with potential implications for food health and safety.
AbstractList Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches. Strawberry plants carried a highly diverse microbiome, therein the bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), and Burkholderiaceae (11%); and the fungal family Mycosphaerella (45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (10.sup.7-10.sup.10 marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused by Botrytis cinerea decreased the diversity as well, and induced a reduction of potentially beneficial taxa. Our findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe transfer during fruit development and storage with potential implications for food health and safety.
Background Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches. Results Strawberry plants carried a highly diverse microbiome, therein the bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), and Burkholderiaceae (11%); and the fungal family Mycosphaerella (45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (10.sup.7-10.sup.10 marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused by Botrytis cinerea decreased the diversity as well, and induced a reduction of potentially beneficial taxa. Conclusion Our findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe transfer during fruit development and storage with potential implications for food health and safety. Keywords: Fragaria x ananassa, Microbiome assembly, Fruit pathogens, Bacterial communities, Fungal communities, Amplicon sequencing, CLSM
Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches. Strawberry plants carried a highly diverse microbiome, therein the bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), and Burkholderiaceae (11%); and the fungal family Mycosphaerella (45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (10 -10 marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused by Botrytis cinerea decreased the diversity as well, and induced a reduction of potentially beneficial taxa. Our findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe transfer during fruit development and storage with potential implications for food health and safety.
Background Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches. Results Strawberry plants carried a highly diverse microbiome, therein the bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), and Burkholderiaceae (11%); and the fungal family Mycosphaerella (45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (107–1010 marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused by Botrytis cinerea decreased the diversity as well, and induced a reduction of potentially beneficial taxa. Conclusion Our findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe transfer during fruit development and storage with potential implications for food health and safety.
Abstract Background Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches. Results Strawberry plants carried a highly diverse microbiome, therein the bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), and Burkholderiaceae (11%); and the fungal family Mycosphaerella (45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (10 7 –10 10 marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused by Botrytis cinerea decreased the diversity as well, and induced a reduction of potentially beneficial taxa. Conclusion Our findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe transfer during fruit development and storage with potential implications for food health and safety.
Abstract Background Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches. Results Strawberry plants carried a highly diverse microbiome, therein the bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), and Burkholderiaceae (11%); and the fungal family Mycosphaerella (45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (107–1010 marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused by Botrytis cinerea decreased the diversity as well, and induced a reduction of potentially beneficial taxa. Conclusion Our findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe transfer during fruit development and storage with potential implications for food health and safety.
BACKGROUNDMicrobiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches. RESULTSStrawberry plants carried a highly diverse microbiome, therein the bacterial families Sphingomonadaceae (25%), Pseudomonadaceae (17%), and Burkholderiaceae (11%); and the fungal family Mycosphaerella (45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (107-1010 marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused by Botrytis cinerea decreased the diversity as well, and induced a reduction of potentially beneficial taxa. CONCLUSIONOur findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe transfer during fruit development and storage with potential implications for food health and safety.
ArticleNumber 21
Audience Academic
Author Olimi, Expedito
Abdelfattah, Ahmed
Wicaksono, Wisnu Adi
Cernava, Tomislav
Berg, Gabriele
Kusstatscher, Peter
Author_xml – sequence: 1
  givenname: Expedito
  surname: Olimi
  fullname: Olimi, Expedito
  organization: Institute of Environmental Biotechnology, Graz University of Technology, Graz, Austria
– sequence: 2
  givenname: Peter
  orcidid: 0000-0002-1168-7675
  surname: Kusstatscher
  fullname: Kusstatscher, Peter
  email: peter.kusstatscher@tugraz.at
  organization: Institute of Environmental Biotechnology, Graz University of Technology, Graz, Austria. peter.kusstatscher@tugraz.at
– sequence: 3
  givenname: Wisnu Adi
  surname: Wicaksono
  fullname: Wicaksono, Wisnu Adi
  organization: Institute of Environmental Biotechnology, Graz University of Technology, Graz, Austria
– sequence: 4
  givenname: Ahmed
  surname: Abdelfattah
  fullname: Abdelfattah, Ahmed
  organization: Leibniz Institute for Agricultural Engineering and Bioeconomy (ATB), Potsdam, Germany
– sequence: 5
  givenname: Tomislav
  surname: Cernava
  fullname: Cernava, Tomislav
  organization: Institute of Environmental Biotechnology, Graz University of Technology, Graz, Austria
– sequence: 6
  givenname: Gabriele
  surname: Berg
  fullname: Berg, Gabriele
  organization: Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
BackLink https://www.ncbi.nlm.nih.gov/pubmed/35484554$$D View this record in MEDLINE/PubMed
BookMark eNptUk1r3DAQNSWlSdP8gR6KoJdenMr6sn0phNCPhUAv7VmM5JFXiy1tJW_D_vsq2TTsljIHjUbvPTEz73V1FmLAqnrb0Oum6dTHLGjb85oyVlMqGlnzF9UFk0zUirfs7Cg_r65y3lBKGW-kkvJVdc6l6ISU4qLCVch-XC-Z-LBEsqyRzN6maHyckUDOOJtpT4Zd8mEkg3cOE4aFjCneL2uSFxgxEwhDSWMqFxJdSRPcG0xpT7YThCW_qV46mDJePZ2X1c8vn3_cfqvvvn9d3d7c1VYqvtRKih4cAkrVK2Ochd4MqmvsgK1R1ihwYuAd61TXt31nnZG0paAk71tLEfhltTroDhE2epv8DGmvI3j9WIhp1JAWbyfUqkM7dI7ZEkJBCwh9z4BzEA0V3BStTwet7c7MONjSdYLpRPT0Jfi1HuNv3VPJpOyKwIcngRR_7TAvevbZ4lQmgnGXNVOyY5yLVhTo-3-gm7hLoYyqoJTiSlF5hBqhNOCDi-Vf-yCqb1qqRJmepAV1_R9UiQHLZouJnC_1EwI7EMrac07onntsqH7wmj54TRev6UevaV5I746n80z56yz-B84R0dQ
CitedBy_id crossref_primary_10_1016_j_jenvman_2024_120886
crossref_primary_10_1186_s40793_023_00526_5
crossref_primary_10_3390_life13122323
crossref_primary_10_1093_femsec_fiae004
crossref_primary_10_1016_j_scitotenv_2023_169009
crossref_primary_10_1128_spectrum_00068_23
crossref_primary_10_1186_s12870_023_04488_1
crossref_primary_10_3390_ijms24129879
crossref_primary_10_3389_fmicb_2024_1348316
crossref_primary_10_1016_j_rhisph_2023_100696
crossref_primary_10_1016_j_scitotenv_2023_162034
crossref_primary_10_3389_fmicb_2024_1399907
crossref_primary_10_1016_j_postharvbio_2024_112815
crossref_primary_10_1186_s40793_022_00446_w
crossref_primary_10_1016_j_fm_2023_104260
crossref_primary_10_1016_j_fufo_2024_100344
crossref_primary_10_3390_horticulturae9020150
crossref_primary_10_1080_03014223_2024_2353285
crossref_primary_10_3390_foods13081175
crossref_primary_10_3390_plants12183240
crossref_primary_10_3390_foods13101473
Cites_doi 10.1038/s41587-019-0209-9
10.1093/femsec/fiaa119
10.3389/FPLS.2018.01611
10.1186/S12864-015-1430-7/FIGURES/5
10.3389/fmicb.2020.585690
10.1371/journal.pone.0160470
10.3389/fmicb.2019.02287
10.1038/s41598-021-82768-2
10.1186/s40168-019-0624-7
10.1186/gb-2013-14-6-209
10.1080/16546628.2017.1361779
10.1038/nmeth.1650
10.3389/fpls.2019.00922
10.1038/s41598-019-53623-2
10.1038/ismej.2012.8
10.1016/B978-0-12-372180-8.50042-1
10.1186/s40168-018-0534-0
10.1016/j.pbi.2015.02.004
10.1093/nar/gkt1209
10.1038/nmeth.3869
10.3923/jbs.2010.273.290
10.1016/J.MICINF.2011.05.009
10.1111/J.1469-8137.2009.03160.X
10.1186/gb-2011-12-6-r60
10.1016/S0723-2020(99)80065-4
10.1146/annurev-arplant-050312-120106
10.1023/A:1005968913237
10.1073/pnas.1302837110
10.1007/s002170050154
10.1007/s10722-015-0311-x
10.3389/fmicb.2021.673810
10.1007/s11104-008-9568-6
10.12688/f1000research.16680.1
10.2478/v10032-008-0001-8
10.1111/nph.13312
10.1038/s41396-017-0028-2
10.1016/j.ijrefrig.2009.01.002
10.3389/fmicb.2014.00064
10.1128/AEM.68.7.3328-3338.2002
10.1371/JOURNAL.PBIO.2003862
10.3389/fmicb.2016.02062
10.3389/fmicb.2019.01629
10.14806/ej.17.1.200
10.1016/j.ijfoodmicro.2013.09.004
10.1038/hortres.2015.22
10.1021/jf100393w
10.1016/S1130-1406(06)70044-4
10.1038/s41477-020-00826-5
10.3767/003158511X571841
10.1128/AEM.01112-07
10.1139/w00-101
10.1021/jf960366o
10.1111/j.1365-294X.1993.tb00005.x
10.1371/JOURNAL.PONE.0057923
10.1128/mBio.00602-12
10.1186/s40168-020-00875-0
10.1371/journal.pone.0088446
10.1094/PBIOMES-04-20-0035-R
10.1016/j.tplants.2020.06.003
10.1016/S0723-2020(99)80053-8
10.1111/MEC.14995
10.1128/AEM.67.10.4742-4751.2001
10.1371/journal.pone.0061217
10.1093/nar/gks1219
10.1093/nar/gkx295
10.1016/S0723-2020(11)80121-9
10.3114/SIM.2007.58.01
10.1073/pnas.0905240106
10.1016/j.foodres.2017.07.076
10.1071/pp01101
10.1038/s41598-018-23518-9
10.1111/j.1574-6941.2008.00546.x
10.1155/S111072430440401X
10.1101/2020.05.03.075457
10.1016/j.tplants.2012.04.001
10.1371/journal.pone.0024452
10.1128/mmbr.00050-14
10.3389/FMICB.2015.00486
10.3390/jof7100838
10.1128/mBio.01492-17
10.1038/NRMICRO.2015.6
10.1038/nmeth.2634
10.1094/PDIS.2001.85.5.529
10.1073/pnas.1000080107
10.1016/j.femsec.2004.08.006
10.1080/10408398.2015.1030064
10.1016/j.scitotenv.2020.138708
10.1111/1462-2920.15392
10.1038/nrmicro3109
10.1038/nrmicro2910
10.1186/s40793-020-00364-9
ContentType Journal Article
Copyright 2022. The Author(s).
COPYRIGHT 2022 BioMed Central Ltd.
2022. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
The Author(s) 2022
Copyright_xml – notice: 2022. The Author(s).
– notice: COPYRIGHT 2022 BioMed Central Ltd.
– notice: 2022. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
– notice: The Author(s) 2022
DBID NPM
AAYXX
CITATION
3V.
7X7
7XB
8FE
8FH
8FI
8FJ
8FK
ABUWG
AFKRA
AZQEC
BBNVY
BENPR
BHPHI
CCPQU
DWQXO
FYUFA
GHDGH
GNUQQ
HCIFZ
K9.
LK8
M0S
M7P
PIMPY
PQEST
PQQKQ
PQUKI
PRINS
7X8
5PM
DOA
DOI 10.1186/s40793-022-00415-3
DatabaseName PubMed
CrossRef
ProQuest Central (Corporate)
Health & Medical Collection
ProQuest Central (purchase pre-March 2016)
ProQuest SciTech Collection
ProQuest Natural Science Collection
Hospital Premium Collection
Hospital Premium Collection (Alumni Edition)
ProQuest Central (Alumni) (purchase pre-March 2016)
ProQuest Central (Alumni)
ProQuest Central
ProQuest Central Essentials
Biological Science Collection
ProQuest Central
Natural Science Collection
ProQuest One Community College
ProQuest Central Korea
Health Research Premium Collection
Health Research Premium Collection (Alumni)
ProQuest Central Student
SciTech Premium Collection
ProQuest Health & Medical Complete (Alumni)
ProQuest Biological Science Collection
Health & Medical Collection (Alumni Edition)
Biological Science Database
Publicly Available Content Database
ProQuest One Academic Eastern Edition (DO NOT USE)
ProQuest One Academic
ProQuest One Academic UKI Edition
ProQuest Central China
MEDLINE - Academic
PubMed Central (Full Participant titles)
DOAJ Directory of Open Access Journals
DatabaseTitle PubMed
CrossRef
Publicly Available Content Database
ProQuest Central Student
ProQuest Central Essentials
ProQuest Health & Medical Complete (Alumni)
ProQuest Central (Alumni Edition)
SciTech Premium Collection
ProQuest One Community College
ProQuest Natural Science Collection
ProQuest Central China
ProQuest Central
Health Research Premium Collection
Health and Medicine Complete (Alumni Edition)
Natural Science Collection
ProQuest Central Korea
Biological Science Collection
ProQuest Biological Science Collection
ProQuest One Academic Eastern Edition
ProQuest Hospital Collection
Health Research Premium Collection (Alumni)
Biological Science Database
ProQuest SciTech Collection
ProQuest Hospital Collection (Alumni)
ProQuest Health & Medical Complete
ProQuest One Academic UKI Edition
ProQuest One Academic
ProQuest Central (Alumni)
MEDLINE - Academic
DatabaseTitleList

PubMed
Publicly Available Content Database
CrossRef

MEDLINE - Academic
Database_xml – sequence: 1
  dbid: DOA
  name: DOAJ Directory of Open Access Journals
  url: https://www.doaj.org/
  sourceTypes: Open Website
– sequence: 2
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 3
  dbid: BENPR
  name: ProQuest Central
  url: https://www.proquest.com/central
  sourceTypes: Aggregation Database
DeliveryMethod fulltext_linktorsrc
Discipline Public Health
EISSN 2524-6372
EndPage 21
ExternalDocumentID oai_doaj_org_article_68ecd8f2c2c246a7aea992a33a41043b
A706454950
10_1186_s40793_022_00415_3
35484554
Genre Journal Article
GeographicLocations United States--US
GeographicLocations_xml – name: United States--US
GrantInformation_xml – fundername: Horizon 2020
  grantid: 81794
– fundername: ;
  grantid: 81794
GroupedDBID 0R~
2XV
7X7
8FI
8FJ
AAFWJ
AAJSJ
ABDBF
ABUWG
ACRMQ
ADBBV
ADUKV
AFKRA
AFPKN
ALIPV
ALMA_UNASSIGNED_HOLDINGS
BBNVY
BCNDV
BENPR
BFQNJ
BHPHI
BMC
C24
C6C
CCPQU
EBD
EBLON
EBS
FYUFA
GROUPED_DOAJ
HCIFZ
HMCUK
IAO
IHR
ITC
M7P
M~E
NPM
OK1
PIMPY
ROL
RPM
RSV
SOJ
UKHRP
AAYXX
CITATION
ABVAZ
AFGXO
AFNRJ
3V.
7XB
8FE
8FH
8FK
AZQEC
DWQXO
GNUQQ
K9.
LK8
PQEST
PQQKQ
PQUKI
PRINS
7X8
5PM
ID FETCH-LOGICAL-c563t-6549afeae5696bbfca9bd681cde7b6cb6af4d3828689798cfb5070a65397c0ea3
IEDL.DBID RPM
ISSN 2524-6372
IngestDate Fri Oct 04 13:07:32 EDT 2024
Tue Sep 17 21:27:29 EDT 2024
Wed Jul 24 12:53:42 EDT 2024
Thu Sep 19 13:17:33 EDT 2024
Fri Feb 23 00:08:16 EST 2024
Sat Dec 16 00:26:34 EST 2023
Thu Sep 26 17:21:58 EDT 2024
Sat Sep 28 08:19:33 EDT 2024
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 1
Keywords Fungal communities
Fragaria × ananassa
Microbiome assembly
Amplicon sequencing
Bacterial communities
Fruit pathogens
CLSM
Language English
License 2022. The Author(s).
Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c563t-6549afeae5696bbfca9bd681cde7b6cb6af4d3828689798cfb5070a65397c0ea3
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
ORCID 0000-0002-1168-7675
OpenAccessLink https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9052558/
PMID 35484554
PQID 2666366054
PQPubID 2040190
PageCount 1
ParticipantIDs doaj_primary_oai_doaj_org_article_68ecd8f2c2c246a7aea992a33a41043b
pubmedcentral_primary_oai_pubmedcentral_nih_gov_9052558
proquest_miscellaneous_2658233474
proquest_journals_2666366054
gale_infotracmisc_A706454950
gale_infotracacademiconefile_A706454950
crossref_primary_10_1186_s40793_022_00415_3
pubmed_primary_35484554
PublicationCentury 2000
PublicationDate 2022-04-28
PublicationDateYYYYMMDD 2022-04-28
PublicationDate_xml – month: 04
  year: 2022
  text: 2022-04-28
  day: 28
PublicationDecade 2020
PublicationPlace England
PublicationPlace_xml – name: England
– name: London
PublicationTitle Environmental microbiome
PublicationTitleAlternate Environ Microbiome
PublicationYear 2022
Publisher BioMed Central Ltd
BioMed Central
BMC
Publisher_xml – name: BioMed Central Ltd
– name: BioMed Central
– name: BMC
References P Yilmaz (415_CR54) 2014; 42
415_CR38
P Kusstatscher (415_CR81) 2020; 15
L Philippot (415_CR16) 2013; 11
415_CR37
415_CR39
MA Lila (415_CR22) 2004; 2004
J Taffner (415_CR79) 2020; 11
RL Berendsen (415_CR10) 2012; 17
TR Turner (415_CR14) 2013; 14
415_CR73
N Segata (415_CR61) 2011; 12
415_CR75
415_CR33
I Zabetakis (415_CR32) 1997; 50
JM Raaijmakers (415_CR15) 2009; 321
H Liu (415_CR91) 2020; 25
G Berg (415_CR7) 2005; 51
RG Griggs (415_CR74) 2021; 12
H Daims (415_CR65) 1999; 22
G Berg (415_CR4) 2018; 12
415_CR49
D Ulrich (415_CR20) 1997; 205
DS Lundberg (415_CR47) 2013; 10
S Deng (415_CR36) 2019; 9
415_CR82
415_CR40
415_CR84
415_CR43
H Matsumoto (415_CR11) 2021; 7
D Li (415_CR25) 2017; 57
415_CR42
G Berg (415_CR30) 2000; 46
RC May (415_CR88) 2016; 14
D Knights (415_CR62) 2011; 8
N Delmotte (415_CR77) 2009; 106
SL Lebeis (415_CR9) 2015; 24
G Berg (415_CR35) 2002; 68
415_CR80
415_CR8
K Smalla (415_CR34) 2001; 67
KK Mahmoud (415_CR66) 2007; 73
K Franz-Oberdorf (415_CR41) 2017; 100
415_CR58
415_CR13
AB Gonçalves (415_CR69) 2006; 23
415_CR1
P Schieberle (415_CR19) 1997; 45
415_CR59
415_CR2
JG Caporaso (415_CR45) 2012; 6
A Dhariwal (415_CR57) 2017; 45
T Janakiev (415_CR78) 2019; 10
415_CR5
PW Crous (415_CR83) 2007; 58
A Abdelfattah (415_CR3) 2021; 23
415_CR50
S Kurze (415_CR31) 2001; 85
415_CR93
A Abdelfattah (415_CR63) 2019; 10
415_CR56
M Verginer (415_CR12) 2010; 58
E Bolyen (415_CR51) 2019; 37
415_CR90
415_CR92
W Manz (415_CR68) 1992; 15
P Vandenkoornhuyse (415_CR17) 2015; 206
JG Caporaso (415_CR44) 2011; 108
JA Edwards (415_CR95) 2018; 16
JA Vorholt (415_CR6) 2012; 10
V Todeschini (415_CR18) 2018; 9
A Heydari (415_CR29) 2010; 10
415_CR24
415_CR27
415_CR26
CR Fitzpatrick (415_CR48) 2018; 6
BJ Callahan (415_CR52) 2016; 13
415_CR28
T Větrovský (415_CR70) 2013; 8
H Meier (415_CR67) 1999; 22
415_CR60
G Hernandez-ramirez (415_CR86) 2021; 7
J Liu (415_CR87) 2013; 167
415_CR64
415_CR23
EJ Byrnes (415_CR89) 2011; 13
C Quast (415_CR53) 2013; 41
B Wassermann (415_CR76) 2019; 10
HX Dang (415_CR85) 2015; 16
C Lazcano (415_CR94) 2021; 11
K Abarenkov (415_CR55) 2010; 186
LA Lofgren (415_CR71) 2019; 28
PR Hardoim (415_CR72) 2015; 79
JA Peiffer (415_CR46) 2013; 110
ML Schwieterman (415_CR21) 2014; 9
References_xml – volume: 37
  start-page: 852
  year: 2019
  ident: 415_CR51
  publication-title: Nat Biotechnol
  doi: 10.1038/s41587-019-0209-9
  contributor:
    fullname: E Bolyen
– ident: 415_CR33
  doi: 10.1093/femsec/fiaa119
– volume: 9
  start-page: 1611
  year: 2018
  ident: 415_CR18
  publication-title: Front Plant Sci
  doi: 10.3389/FPLS.2018.01611
  contributor:
    fullname: V Todeschini
– volume: 16
  start-page: 1
  year: 2015
  ident: 415_CR85
  publication-title: BMC Genomics
  doi: 10.1186/S12864-015-1430-7/FIGURES/5
  contributor:
    fullname: HX Dang
– volume: 11
  year: 2020
  ident: 415_CR79
  publication-title: Front Microbiol
  doi: 10.3389/fmicb.2020.585690
  contributor:
    fullname: J Taffner
– ident: 415_CR27
  doi: 10.1371/journal.pone.0160470
– volume: 10
  start-page: 2287
  year: 2019
  ident: 415_CR78
  publication-title: Front Microbiol
  doi: 10.3389/fmicb.2019.02287
  contributor:
    fullname: T Janakiev
– volume: 11
  start-page: 3188
  year: 2021
  ident: 415_CR94
  publication-title: Sci Rep
  doi: 10.1038/s41598-021-82768-2
  contributor:
    fullname: C Lazcano
– ident: 415_CR92
  doi: 10.1186/s40168-019-0624-7
– volume: 14
  start-page: 1
  year: 2013
  ident: 415_CR14
  publication-title: Genome Biol
  doi: 10.1186/gb-2013-14-6-209
  contributor:
    fullname: TR Turner
– ident: 415_CR23
  doi: 10.1080/16546628.2017.1361779
– volume: 8
  start-page: 761
  year: 2011
  ident: 415_CR62
  publication-title: Nat Methods
  doi: 10.1038/nmeth.1650
  contributor:
    fullname: D Knights
– volume: 10
  start-page: 922
  year: 2019
  ident: 415_CR63
  publication-title: Front Plant Sci
  doi: 10.3389/fpls.2019.00922
  contributor:
    fullname: A Abdelfattah
– volume: 9
  start-page: 1
  year: 2019
  ident: 415_CR36
  publication-title: Sci Rep
  doi: 10.1038/s41598-019-53623-2
  contributor:
    fullname: S Deng
– volume: 6
  start-page: 1621
  year: 2012
  ident: 415_CR45
  publication-title: ISME J
  doi: 10.1038/ismej.2012.8
  contributor:
    fullname: JG Caporaso
– ident: 415_CR43
  doi: 10.1016/B978-0-12-372180-8.50042-1
– volume: 6
  start-page: 144
  year: 2018
  ident: 415_CR48
  publication-title: Microbiome
  doi: 10.1186/s40168-018-0534-0
  contributor:
    fullname: CR Fitzpatrick
– volume: 24
  start-page: 82
  year: 2015
  ident: 415_CR9
  publication-title: Curr Opin Plant Biol
  doi: 10.1016/j.pbi.2015.02.004
  contributor:
    fullname: SL Lebeis
– volume: 42
  start-page: D643
  year: 2014
  ident: 415_CR54
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkt1209
  contributor:
    fullname: P Yilmaz
– volume: 13
  start-page: 581
  year: 2016
  ident: 415_CR52
  publication-title: Nat Methods
  doi: 10.1038/nmeth.3869
  contributor:
    fullname: BJ Callahan
– volume: 10
  start-page: 273
  year: 2010
  ident: 415_CR29
  publication-title: J Biol Sci
  doi: 10.3923/jbs.2010.273.290
  contributor:
    fullname: A Heydari
– volume: 13
  start-page: 895
  year: 2011
  ident: 415_CR89
  publication-title: Microbes Infect
  doi: 10.1016/J.MICINF.2011.05.009
  contributor:
    fullname: EJ Byrnes
– volume: 186
  start-page: 281
  year: 2010
  ident: 415_CR55
  publication-title: New Phytol
  doi: 10.1111/J.1469-8137.2009.03160.X
  contributor:
    fullname: K Abarenkov
– volume: 12
  start-page: R60
  year: 2011
  ident: 415_CR61
  publication-title: Genome Biol
  doi: 10.1186/gb-2011-12-6-r60
  contributor:
    fullname: N Segata
– volume: 22
  start-page: 186
  year: 1999
  ident: 415_CR67
  publication-title: Syst Appl Microbiol
  doi: 10.1016/S0723-2020(99)80065-4
  contributor:
    fullname: H Meier
– ident: 415_CR2
  doi: 10.1146/annurev-arplant-050312-120106
– volume: 50
  start-page: 179
  year: 1997
  ident: 415_CR32
  publication-title: Plant Cell Tissue Organ Cult
  doi: 10.1023/A:1005968913237
  contributor:
    fullname: I Zabetakis
– volume: 110
  start-page: 6548
  year: 2013
  ident: 415_CR46
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.1302837110
  contributor:
    fullname: JA Peiffer
– volume: 205
  start-page: 218
  year: 1997
  ident: 415_CR20
  publication-title: Eur Food Res Technol
  doi: 10.1007/s002170050154
  contributor:
    fullname: D Ulrich
– ident: 415_CR40
  doi: 10.1007/s10722-015-0311-x
– volume: 12
  start-page: 836
  year: 2021
  ident: 415_CR74
  publication-title: Front Microbiol
  doi: 10.3389/fmicb.2021.673810
  contributor:
    fullname: RG Griggs
– volume: 321
  start-page: 341
  year: 2009
  ident: 415_CR15
  publication-title: Plant Soil
  doi: 10.1007/s11104-008-9568-6
  contributor:
    fullname: JM Raaijmakers
– ident: 415_CR60
  doi: 10.12688/f1000research.16680.1
– ident: 415_CR24
  doi: 10.2478/v10032-008-0001-8
– ident: 415_CR38
– volume: 206
  start-page: 1196
  year: 2015
  ident: 415_CR17
  publication-title: New Phytol
  doi: 10.1111/nph.13312
  contributor:
    fullname: P Vandenkoornhuyse
– volume: 12
  start-page: 1167
  year: 2018
  ident: 415_CR4
  publication-title: ISME J
  doi: 10.1038/s41396-017-0028-2
  contributor:
    fullname: G Berg
– ident: 415_CR59
– ident: 415_CR39
  doi: 10.1016/j.ijrefrig.2009.01.002
– ident: 415_CR13
  doi: 10.3389/fmicb.2014.00064
– volume: 68
  start-page: 3328
  year: 2002
  ident: 415_CR35
  publication-title: Appl Environ Microbiol
  doi: 10.1128/AEM.68.7.3328-3338.2002
  contributor:
    fullname: G Berg
– volume: 16
  year: 2018
  ident: 415_CR95
  publication-title: PLOS Biol
  doi: 10.1371/JOURNAL.PBIO.2003862
  contributor:
    fullname: JA Edwards
– ident: 415_CR37
  doi: 10.3389/fmicb.2016.02062
– volume: 10
  start-page: 1629
  year: 2019
  ident: 415_CR76
  publication-title: Front Microbiol
  doi: 10.3389/fmicb.2019.01629
  contributor:
    fullname: B Wassermann
– ident: 415_CR50
  doi: 10.14806/ej.17.1.200
– volume: 167
  start-page: 153
  year: 2013
  ident: 415_CR87
  publication-title: Int J Food Microbiol
  doi: 10.1016/j.ijfoodmicro.2013.09.004
  contributor:
    fullname: J Liu
– ident: 415_CR28
  doi: 10.1038/hortres.2015.22
– volume: 58
  start-page: 8344
  year: 2010
  ident: 415_CR12
  publication-title: J Agric Food Chem
  doi: 10.1021/jf100393w
  contributor:
    fullname: M Verginer
– volume: 23
  start-page: 194
  year: 2006
  ident: 415_CR69
  publication-title: Rev Iberoam Micol
  doi: 10.1016/S1130-1406(06)70044-4
  contributor:
    fullname: AB Gonçalves
– volume: 7
  start-page: 60
  year: 2021
  ident: 415_CR11
  publication-title: Nat Plants
  doi: 10.1038/s41477-020-00826-5
  contributor:
    fullname: H Matsumoto
– ident: 415_CR84
  doi: 10.3767/003158511X571841
– volume: 73
  start-page: 7488
  year: 2007
  ident: 415_CR66
  publication-title: Appl Environ Microbiol
  doi: 10.1128/AEM.01112-07
  contributor:
    fullname: KK Mahmoud
– volume: 46
  start-page: 1128
  year: 2000
  ident: 415_CR30
  publication-title: Can J Microbiol
  doi: 10.1139/w00-101
  contributor:
    fullname: G Berg
– volume: 45
  start-page: 227
  year: 1997
  ident: 415_CR19
  publication-title: J Agric Food Chem
  doi: 10.1021/jf960366o
  contributor:
    fullname: P Schieberle
– ident: 415_CR49
  doi: 10.1111/j.1365-294X.1993.tb00005.x
– ident: 415_CR56
– volume: 8
  year: 2013
  ident: 415_CR70
  publication-title: PLoS ONE
  doi: 10.1371/JOURNAL.PONE.0057923
  contributor:
    fullname: T Větrovský
– ident: 415_CR75
  doi: 10.1128/mBio.00602-12
– ident: 415_CR1
  doi: 10.1186/s40168-020-00875-0
– volume: 9
  start-page: 88446
  year: 2014
  ident: 415_CR21
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0088446
  contributor:
    fullname: ML Schwieterman
– ident: 415_CR80
  doi: 10.1094/PBIOMES-04-20-0035-R
– volume: 25
  start-page: 841
  year: 2020
  ident: 415_CR91
  publication-title: Trends Plant Sci
  doi: 10.1016/j.tplants.2020.06.003
  contributor:
    fullname: H Liu
– volume: 22
  start-page: 434
  year: 1999
  ident: 415_CR65
  publication-title: Syst Appl Microbiol
  doi: 10.1016/S0723-2020(99)80053-8
  contributor:
    fullname: H Daims
– volume: 28
  start-page: 721
  year: 2019
  ident: 415_CR71
  publication-title: Mol Ecol
  doi: 10.1111/MEC.14995
  contributor:
    fullname: LA Lofgren
– volume: 67
  start-page: 4742
  year: 2001
  ident: 415_CR34
  publication-title: Appl Environ Microbiol
  doi: 10.1128/AEM.67.10.4742-4751.2001
  contributor:
    fullname: K Smalla
– ident: 415_CR58
  doi: 10.1371/journal.pone.0061217
– volume: 41
  start-page: 590
  year: 2013
  ident: 415_CR53
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gks1219
  contributor:
    fullname: C Quast
– volume: 45
  start-page: W180
  year: 2017
  ident: 415_CR57
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkx295
  contributor:
    fullname: A Dhariwal
– volume: 15
  start-page: 593
  year: 1992
  ident: 415_CR68
  publication-title: Syst Appl Microbiol
  doi: 10.1016/S0723-2020(11)80121-9
  contributor:
    fullname: W Manz
– volume: 58
  start-page: 1
  year: 2007
  ident: 415_CR83
  publication-title: Stud Mycol
  doi: 10.3114/SIM.2007.58.01
  contributor:
    fullname: PW Crous
– volume: 106
  start-page: 16428
  year: 2009
  ident: 415_CR77
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.0905240106
  contributor:
    fullname: N Delmotte
– volume: 100
  start-page: 748
  year: 2017
  ident: 415_CR41
  publication-title: Food Res Int
  doi: 10.1016/j.foodres.2017.07.076
  contributor:
    fullname: K Franz-Oberdorf
– ident: 415_CR5
  doi: 10.1071/pp01101
– ident: 415_CR26
– ident: 415_CR73
  doi: 10.1038/s41598-018-23518-9
– ident: 415_CR64
  doi: 10.1111/j.1574-6941.2008.00546.x
– volume: 2004
  start-page: 306
  year: 2004
  ident: 415_CR22
  publication-title: J Biomed Biotechnol
  doi: 10.1155/S111072430440401X
  contributor:
    fullname: MA Lila
– ident: 415_CR82
  doi: 10.1101/2020.05.03.075457
– volume: 17
  start-page: 478
  year: 2012
  ident: 415_CR10
  publication-title: Trends Plant Sci
  doi: 10.1016/j.tplants.2012.04.001
  contributor:
    fullname: RL Berendsen
– ident: 415_CR42
  doi: 10.1371/journal.pone.0024452
– volume: 79
  start-page: 293
  year: 2015
  ident: 415_CR72
  publication-title: Microbiol Mol Biol Rev
  doi: 10.1128/mmbr.00050-14
  contributor:
    fullname: PR Hardoim
– ident: 415_CR8
  doi: 10.3389/FMICB.2015.00486
– volume: 7
  start-page: 1
  year: 2021
  ident: 415_CR86
  publication-title: J Fungi
  doi: 10.3390/jof7100838
  contributor:
    fullname: G Hernandez-ramirez
– ident: 415_CR90
  doi: 10.1128/mBio.01492-17
– volume: 14
  start-page: 106
  year: 2016
  ident: 415_CR88
  publication-title: Nat Rev Microbiol
  doi: 10.1038/NRMICRO.2015.6
  contributor:
    fullname: RC May
– volume: 10
  start-page: 999
  year: 2013
  ident: 415_CR47
  publication-title: Nat Methods
  doi: 10.1038/nmeth.2634
  contributor:
    fullname: DS Lundberg
– volume: 85
  start-page: 529
  year: 2001
  ident: 415_CR31
  publication-title: Plant Dis
  doi: 10.1094/PDIS.2001.85.5.529
  contributor:
    fullname: S Kurze
– volume: 108
  start-page: 4516
  issue: SUPPL. 1
  year: 2011
  ident: 415_CR44
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.1000080107
  contributor:
    fullname: JG Caporaso
– volume: 51
  start-page: 215
  year: 2005
  ident: 415_CR7
  publication-title: FEMS Microbiol Ecol
  doi: 10.1016/j.femsec.2004.08.006
  contributor:
    fullname: G Berg
– volume: 57
  start-page: 1729
  year: 2017
  ident: 415_CR25
  publication-title: Crit Rev Food Sci Nutr
  doi: 10.1080/10408398.2015.1030064
  contributor:
    fullname: D Li
– ident: 415_CR93
  doi: 10.1016/j.scitotenv.2020.138708
– volume: 23
  start-page: 2199
  year: 2021
  ident: 415_CR3
  publication-title: Environ Microbiol
  doi: 10.1111/1462-2920.15392
  contributor:
    fullname: A Abdelfattah
– volume: 11
  start-page: 789
  year: 2013
  ident: 415_CR16
  publication-title: Nat Rev Microbiol
  doi: 10.1038/nrmicro3109
  contributor:
    fullname: L Philippot
– volume: 10
  start-page: 828
  year: 2012
  ident: 415_CR6
  publication-title: Nat Rev Microbiol
  doi: 10.1038/nrmicro2910
  contributor:
    fullname: JA Vorholt
– volume: 15
  start-page: 17
  year: 2020
  ident: 415_CR81
  publication-title: Environ Microbiomes
  doi: 10.1186/s40793-020-00364-9
  contributor:
    fullname: P Kusstatscher
SSID ssj0002315655
Score 2.3840973
Snippet Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit...
Abstract Background Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for...
Background Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit...
BACKGROUNDMicrobiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit...
Abstract Background Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for...
SourceID doaj
pubmedcentral
proquest
gale
crossref
pubmed
SourceType Open Website
Open Access Repository
Aggregation Database
Index Database
StartPage 21
SubjectTerms Amplicon sequencing
Analysis
Bacteria
Bacterial communities
Burkholderiaceae
Cultivars
Flowers
Flowers & plants
Food safety
Fragaria ananassa
Fragaria × ananassa
Fruit
Fruit pathogens
Fruits
Fungal communities
Fungi
Growth
Microbiome assembly
Microbiomes
Mycosphaerella
Phyllosphere
Plant growth
Post-harvest decay
Pseudomonadaceae
Rhizosphere
Sphingomonadaceae
Strawberries
SummonAdditionalLinks – databaseName: DOAJ Directory of Open Access Journals
  dbid: DOA
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1La9wwEBYhp0IofaSt07SoEMghiGysh6VjWhrSHnJKIDehl5MtWW9YO5T8-85I3mVND70Un2xJYM1Dmk_MfCLkCHCs85onppWrGeAvzrTQhsnYKoFZ7zLkBNkrdXkjft7K262rvjAnrNADF8GdKp1C1G0d4BHKNS45Y2rHuROAJLjPq--Z3AJTvzKJC-ASKddVMlqd9gKp4BgmryPHlGR8shNlwv6_l-WtfWmaM7m1CV28Ii_H6JGel79-TXZS94bslaM3WiqK3pL0o-sRcvd03g1LChEeXcwL39IiUQiW08I_PNNSoEjXN6QM9A4Q-XBPIVy8Sz11XaSYOQkvdNlSPBH57dNq9UwfHzB3Zp_cXHy__nbJxtsUWJCKD0wBEnRtckkqo7xvgzM-Kn0WYmq8Cl65VkSOVeXaNEaH1kOoOHNIXduEWXL8Hdntll36QGgA6AlhAciCR9Go6EI0oFZQex0CLBgVOVlL1j4W0gybwYZWtujBgh5s1oPlFfmKwt_0RMLr_AHMwI5mYP9lBhU5RtVZdEsQSHBjdQH8MBJc2fMGifkADc4qcjjpCe4Ups1r5dvRnXsLUYziCpCfqMiXTTOOxBS1Li2fsI_UNeeigT7vi61spsQBFwqJo5uJFU3mPG3p5veZ7NvgRYNSH_wPIX0kL-rsAILV-pDsDqun9AliqsF_zu7zBznTH2E
  priority: 102
  providerName: Directory of Open Access Journals
– databaseName: Health & Medical Collection
  dbid: 7X7
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1La9wwEBZpeimU0vQVt0lRodBDEbuxnj6VNCRse-ipgb0JvbxZyNrbtUPJv--MH9uYQvFpLRlszUj6Pu3MN4R8BB7rvOGJGeVyBvyLMyNMwWQslcCodxm6ANkfanEtvi_l8oAsxlwYDKsc18RuoY51wDPyGWwkiisA32LmPJ4ChHb2ZfuLYf0o_J91KKbxiDw-ywFWgGfrpd6ftgCKAeQix6wZo2aNQGk4hsHsqDklGZ_sTJ2A_7_L9IN9ahpD-WBTunpOng1okp735j8iB6l6QZ72R3G0zzB6SdK3qkEK3tB11dYUEB_drHv9pU2iAJ7Txt_e0z5hkY4VU1q6Aobe3lCAj6vUUFdFipGU8IPWJcWx-e3TbndPt7cYS_OKXF9d_rxYsKG6AgtS8ZYpYIauTC5JVSjvy-AKH5U5CzFpr4JXrhSRY5a5KXRhQukBOs4dStnqME-OvyaHVV2lY0IDUFGACTAWPAqtoguxADODG-QhwAKSkc_jyNptL6JhO_JhlO3tYMEOtrOD5Rn5ioO_74kC2N2Nereyw3yyyqQQTZkHuIRy2iVXFLnj3AkgmNxn5BOazuI0RWdxQ7YBvDAKXtlzjUJ9wA7nGTmZ9ITpFabNo_HtML0b-9cZM_Jh34xPYshaleo77CNNzrnQ0OdN7yv7T-LAE4XEp_XEiybfPG2p1jed-HeBhQelefv_13pHnuSdawuWmxNy2O7u0imgp9a_7ybGH2fxGjs
  priority: 102
  providerName: ProQuest
Title Insights into the microbiome assembly during different growth stages and storage of strawberry plants
URI https://www.ncbi.nlm.nih.gov/pubmed/35484554
https://www.proquest.com/docview/2666366054/abstract/
https://search.proquest.com/docview/2658233474
https://pubmed.ncbi.nlm.nih.gov/PMC9052558
https://doaj.org/article/68ecd8f2c2c246a7aea992a33a41043b
Volume 17
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1da9swFBVt9zIYY9_z1gUNBnsYbjLr049taekGK2WskDchyXKaEdshcRn997tXtkPM3kaeHMlg6-pa54hzjwj5BDzWOs1CqqXNUuBfLNVc56koSslR9S58FMhey6tb_n0u5gdEDLUwUbTv3fKkXlUn9fIuaivXlZ8OOrHpzY_zHA9fE3p6SA4VY3sU_Xf0bwFKIsRQIKPldMvRBS5F3TraS4kUD89hANW5EHy0HkXb_n8_znur01g5ubcUXT4jT3sMSU-7Z31ODkL9gjzpNuBoV1f0koRv9RaJ95Yu67ahgPNotexcl6pAATKHyq0eaFemSIdzUlq6AF7e3lEAjYuwpbYuKOon4YI2JcV9kT8ubDYPdL1CBc0rcnt58ev8Ku3PVEi9kKxNJfBBWwYbhMylc6W3uSuk_uqLoJz0TtqSFwxry3Wucu1LB4BxZtHAVvlZsOw1OaqbOrwl1AMBBXAAY8EKrmRhfZFDcCH4mffw2UjIl2FkzbqzzjCRcmhpupAYCImJITEsIWc4-LueaHsd_2g2C9MH30gdfKHLzMOPS6tssHmeWcYsB1rJXEI-Y-gMJicMiLd9jQE8MNpcmVOF9nzACWcJOR71hKTy4-Yh-KZP6q0BLCOZBP7HE_Jx14x3olCtDs099hE6Y4wr6POmmyu7VxqmXELUaBaN3nncAhkQLb_7Gf_uv-98Tx5nMQF4muljctRu7sMHgFOtm0ASzdWEPDq7uL75OYmbEpOYUn8Bursi9g
link.rule.ids 230,315,733,786,790,870,891,2115,12083,21416,27957,27958,31754,31755,33779,33780,43345,43840,53827,53829
linkProvider National Library of Medicine
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1ba9RAFB50-6Ag4t1o1REEH2ToNnPJ5ElaadlqXURa6Nswt2wXusm6SZH-e8_JZW0QJE-bmUAyZ87M95095xtCPgCPtU7zyLSyKQP-xZkWOmcyFEpg1rv0bYLsXM3OxdcLedEH3Oo-rXJYE9uFOlQeY-R7sJEorgB8i8_rXwxPjcJ_V_sjNO6SHcGBqkzIzuHR_MfPbZQF0AsgFjlUy2i1VwuUhGOYxI5aU5Lx0Y7UCvf_uzzf2p_GuZO3NqPjR-RhjyLpQWf2x-ROLJ-QB10IjnaVRU9JPClrpN41XZZNRQHp0dWy011aRQqgOa7c1Q3tChXpcFJKQxfAzJtLCrBxEWtqy0AxgxJ-0KqgGBn57eJmc0PXV5hD84ycHx-dfZmx_lQF5qXiDVPACG0RbZQqV84V3uYuKL3vQ8yc8k7ZQgSO1eU6z3LtCweQcWpRwjbz02j5czIpqzK-JNQDBQV4AGPBg8hUsD7kYF4wf-o9LBwJ-TSMrFl34hmmJR1amc4OBuxgWjsYnpBDHPxtTxS-bm9Um4Xp_cgoHX3QRerhEspmNto8Ty3nVgCx5C4hH9F0Bt0TBsTbvsoAXhiFrsxBhgJ9wAqnCdkd9QS38uPmwfimd-va_J2ECXm_bcYnMVWtjNU19pE65Vxk0OdFN1e2n8SBHwqJT2ejWTT65nFLubxsRb9zPHBQ6lf_f6135N7s7PupOT2Zf3tN7qftNBcs1btk0myu4xtAUI1727vJHyvUGtQ
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1Lj9MwELZgkRAS4v0ILGAkJA4obYkfcY7LQrXLY7UHVlpxsWzH6RaatGpSoeXXM-MkVQO3VU-tJ1LtmbHni775TMgbwLHGKuZjJU0SA_5iseIqi0VeSI6sd-ECQfZEHp3xz-fifOeqr0Dad3Y-qhblqJpfBG7lqnTjnic2Pv12mOHla0KNV3kxvk5uQM4m2Q5Q_xlUXACYCNG3ySg5rjlqwcXIXkeRKRHjFToMCnYuBB-cSkG8__8teueMGvIndw6k6V3yo59Ky0P5Ndo0duT-_KPyeKW53iN3ujKVHrQm98k1Xz0gt9t3fLRtXXpI_HFVI7av6bxqlhRKSVrOW2Gn0lOoyn1pF5e07YSk_VUsDZ0B9G8uKNSlM19TU-UUKZrwhS4Liq9eflu_Xl_S1QJJOo_I2fTT98OjuLu2IXZCsiaWADlN4Y0XMpPWFs5kNpfqvct9aqWz0hQ8Z9i-rrI0U66wUJNODGrkpm7iDXtM9qpl5Z8S6gDjQv0BC81ynsrcuDyD-IH4SpyDnSki73q36VWrzqEDqlFSt_7W4G8d_K1ZRD6gZ7eWqKwdfliuZ7pbcy2Vd7kqEgcfLk1qvMmyxDBmOCBXZiPyFuNCY_7DgjjTtTHAH0YlLX2QogIgwM5JRPYHlpC3bjjcR5bu9o1aQ7kkmQSIySPyejuMTyIXrvLLDdoIlTDGU7B50gbidkp9PEckHYToYM7DEQi8oCreBdqzKz_5itw8_TjVX49Pvjwnt5KQaDxO1D7Za9Yb_wKKt8a-DGn6F8tpQ_o
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Insights+into+the+microbiome+assembly+during+different+growth+stages+and+storage+of+strawberry+plants&rft.jtitle=Environmental+microbiome&rft.au=Olimi%2C+Expedito&rft.au=Kusstatscher%2C+Peter&rft.au=Wicaksono%2C+Wisnu+Adi&rft.au=Abdelfattah%2C+Ahmed&rft.date=2022-04-28&rft.pub=BioMed+Central&rft.eissn=2524-6372&rft.volume=17&rft_id=info:doi/10.1186%2Fs40793-022-00415-3&rft_id=info%3Apmid%2F35484554&rft.externalDBID=PMC9052558
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2524-6372&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2524-6372&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2524-6372&client=summon