family Parvoviridae

A set of proposals to rationalize and extend the taxonomy of the family Parvoviridae is currently under review by the International Committee on Taxonomy of Viruses (ICTV). Viruses in this family infect a wide range of hosts, as reflected by the longstanding division into two subfamilies: the Parvov...

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Published in	Archives of virology Vol. 159; no. 5; pp. 1239 - 1247
Main Authors	Cotmore, Susan F, Agbandje-McKenna, Mavis, Chiorini, John A, Mukha, Dmitry V, Pintel, David J, Qiu, Jianming, Soderlund-Venermo, Maria, Tattersall, Peter, Tijssen, Peter, Gatherer, Derek, Davison, Andrew J
Format	Journal Article
Language	English
Published	Vienna Springer-Verlag 01.05.2014 Springer Vienna Springer Nature B.V
Subjects	Ambidensovirus Arthropoda Biomedical and Life Sciences Biomedicine classification Densovirinae Densovirus genetics Genome, Viral host range hosts Immunology Infectious Diseases Medical Microbiology Medicine new species nucleotide sequences Parvoviridae Parvoviridae - classification Parvoviridae - genetics Parvovirinae Parvovirus Phylogenetics Phylogeny Proposals Proteins Protoparvovirus sequence homology Species Specificity Taxonomy Virology Virology Division News Viruses United States > US Host Order Blatella Germanica Core Capsid Protein Host Taxon Shrimp Virus
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Abstract	A set of proposals to rationalize and extend the taxonomy of the family Parvoviridae is currently under review by the International Committee on Taxonomy of Viruses (ICTV). Viruses in this family infect a wide range of hosts, as reflected by the longstanding division into two subfamilies: the Parvovirinae, which contains viruses that infect vertebrate hosts, and the Densovirinae, encompassing viruses that infect arthropod hosts. Using a modified definition for classification into the family that no longer demands isolation as long as the biological context is strong, but does require a near-complete DNA sequence, 134 new viruses and virus variants were identified. The proposals introduce new species and genera into both subfamilies, resolve one misclassified species, and improve taxonomic clarity by employing a series of systematic changes. These include identifying a precise level of sequence similarity required for viruses to belong to the same genus and decreasing the level of sequence similarity required for viruses to belong to the same species. These steps will facilitate recognition of the major phylogenetic branches within genera and eliminate the confusion caused by the near-identity of species and viruses. Changes to taxon nomenclature will establish numbered, non-Latinized binomial names for species, indicating genus affiliation and host range rather than recapitulating virus names. Also, affixes will be included in the names of genera to clarify subfamily affiliation and reduce the ambiguity that results from the vernacular use of “parvovirus” and “densovirus” to denote multiple taxon levels.
AbstractList	A set of proposals to rationalize and extend the taxonomy of the family Parvoviridae is currently under review by the International Committee on Taxonomy of Viruses (ICTV). Viruses in this family infect a wide range of hosts, as reflected by the longstanding division into two subfamilies: the Parvovirinae , which contains viruses that infect vertebrate hosts, and the Densovirinae , encompassing viruses that infect arthropod hosts. Using a modified definition for classification into the family that no longer demands isolation as long as the biological context is strong, but does require a near-complete DNA sequence, 134 new viruses and virus variants were identified. The proposals introduce new species and genera into both subfamilies, resolve one misclassified species, and improve taxonomic clarity by employing a series of systematic changes. These include identifying a precise level of sequence similarity required for viruses to belong to the same genus and decreasing the level of sequence similarity required for viruses to belong to the same species. These steps will facilitate recognition of the major phylogenetic branches within genera and eliminate the confusion caused by the near-identity of species and viruses. Changes to taxon nomenclature will establish numbered, non-Latinized binomial names for species, indicating genus affiliation and host range rather than recapitulating virus names. Also, affixes will be included in the names of genera to clarify subfamily affiliation and reduce the ambiguity that results from the vernacular use of “parvovirus” and “densovirus” to denote multiple taxon levels. A set of proposals to rationalize and extend the taxonomy of the family Parvoviridae is currently under review by the International Committee on Taxonomy of Viruses (ICTV). Viruses in this family infect a wide range of hosts, as reflected by the longstanding division into two subfamilies: the Parvovirinae, which contains viruses that infect vertebrate hosts, and the Densovirinae, encompassing viruses that infect arthropod hosts. Using a modified definition for classification into the family that no longer demands isolation as long as the biological context is strong, but does require a near-complete DNA sequence, 134 new viruses and virus variants were identified. The proposals introduce new species and genera into both subfamilies, resolve one misclassified species, and improve taxonomic clarity by employing a series of systematic changes. These include identifying a precise level of sequence similarity required for viruses to belong to the same genus and decreasing the level of sequence similarity required for viruses to belong to the same species. These steps will facilitate recognition of the major phylogenetic branches within genera and eliminate the confusion caused by the near-identity of species and viruses. Changes to taxon nomenclature will establish numbered, non-Latinized binomial names for species, indicating genus affiliation and host range rather than recapitulating virus names. Also, affixes will be included in the names of genera to clarify subfamily affiliation and reduce the ambiguity that results from the vernacular use of "parvovirus" and "densovirus" to denote multiple taxon levels.[PUBLICATION ABSTRACT] A set of proposals to rationalize and extend the taxonomy of the family Parvoviridae is currently under review by the International Committee on Taxonomy of Viruses (ICTV). Viruses in this family infect a wide range of hosts, as reflected by the longstanding division into two subfamilies: the Parvovirinae, which contains viruses that infect vertebrate hosts, and the Densovirinae, encompassing viruses that infect arthropod hosts. Using a modified definition for classification into the family that no longer demands isolation as long as the biological context is strong, but does require a near-complete DNA sequence, 134 new viruses and virus variants were identified. The proposals introduce new species and genera into both subfamilies, resolve one misclassified species, and improve taxonomic clarity by employing a series of systematic changes. These include identifying a precise level of sequence similarity required for viruses to belong to the same genus and decreasing the level of sequence similarity required for viruses to belong to the same species. These steps will facilitate recognition of the major phylogenetic branches within genera and eliminate the confusion caused by the near-identity of species and viruses. Changes to taxon nomenclature will establish numbered, non-Latinized binomial names for species, indicating genus affiliation and host range rather than recapitulating virus names. Also, affixes will be included in the names of genera to clarify subfamily affiliation and reduce the ambiguity that results from the vernacular use of "parvovirus" and "densovirus" to denote multiple taxon levels.A set of proposals to rationalize and extend the taxonomy of the family Parvoviridae is currently under review by the International Committee on Taxonomy of Viruses (ICTV). Viruses in this family infect a wide range of hosts, as reflected by the longstanding division into two subfamilies: the Parvovirinae, which contains viruses that infect vertebrate hosts, and the Densovirinae, encompassing viruses that infect arthropod hosts. Using a modified definition for classification into the family that no longer demands isolation as long as the biological context is strong, but does require a near-complete DNA sequence, 134 new viruses and virus variants were identified. The proposals introduce new species and genera into both subfamilies, resolve one misclassified species, and improve taxonomic clarity by employing a series of systematic changes. These include identifying a precise level of sequence similarity required for viruses to belong to the same genus and decreasing the level of sequence similarity required for viruses to belong to the same species. These steps will facilitate recognition of the major phylogenetic branches within genera and eliminate the confusion caused by the near-identity of species and viruses. Changes to taxon nomenclature will establish numbered, non-Latinized binomial names for species, indicating genus affiliation and host range rather than recapitulating virus names. Also, affixes will be included in the names of genera to clarify subfamily affiliation and reduce the ambiguity that results from the vernacular use of "parvovirus" and "densovirus" to denote multiple taxon levels. A set of proposals to rationalize and extend the taxonomy of the family Parvoviridae is currently under review by the International Committee on Taxonomy of Viruses (ICTV). Viruses in this family infect a wide range of hosts, as reflected by the longstanding division into two subfamilies: the Parvovirinae, which contains viruses that infect vertebrate hosts, and the Densovirinae, encompassing viruses that infect arthropod hosts. Using a modified definition for classification into the family that no longer demands isolation as long as the biological context is strong, but does require a near-complete DNA sequence, 134 new viruses and virus variants were identified. The proposals introduce new species and genera into both subfamilies, resolve one misclassified species, and improve taxonomic clarity by employing a series of systematic changes. These include identifying a precise level of sequence similarity required for viruses to belong to the same genus and decreasing the level of sequence similarity required for viruses to belong to the same species. These steps will facilitate recognition of the major phylogenetic branches within genera and eliminate the confusion caused by the near-identity of species and viruses. Changes to taxon nomenclature will establish numbered, non-Latinized binomial names for species, indicating genus affiliation and host range rather than recapitulating virus names. Also, affixes will be included in the names of genera to clarify subfamily affiliation and reduce the ambiguity that results from the vernacular use of “parvovirus” and “densovirus” to denote multiple taxon levels.
Author	Chiorini, John A Qiu, Jianming Pintel, David J Davison, Andrew J Gatherer, Derek Agbandje-McKenna, Mavis Cotmore, Susan F Soderlund-Venermo, Maria Tijssen, Peter Tattersall, Peter Mukha, Dmitry V
Author_xml	– sequence: 1 fullname: Cotmore, Susan F – sequence: 2 fullname: Agbandje-McKenna, Mavis – sequence: 3 fullname: Chiorini, John A – sequence: 4 fullname: Mukha, Dmitry V – sequence: 5 fullname: Pintel, David J – sequence: 6 fullname: Qiu, Jianming – sequence: 7 fullname: Soderlund-Venermo, Maria – sequence: 8 fullname: Tattersall, Peter – sequence: 9 fullname: Tijssen, Peter – sequence: 10 fullname: Gatherer, Derek – sequence: 11 fullname: Davison, Andrew J
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/24212889$$D View this record in MEDLINE/PubMed
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Keywords	Host Order Blatella Germanica Core Capsid Protein Host Taxon Shrimp Virus
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References	Huang, Deng, Yan, Cheng, Luo, Shen, Lei-Butters, Chen, Li, Tang, Söderlund-Venermo, Engelhardt, Qiu (CR8) 2012; 8 CR2 Eddy (CR6) 2011; 7 Tijssen, Agbandje-McKenna, Almendral, Bergoin, Flegel, Hedman, Kleinschmidt, Li, Pintel, Tattersall, King, Adams, Carstens, Lefkowitz (CR14) 2011 Ge, Li, Yang, Zhang, Zhou, Zhang, Shi (CR7) 2012; 86 Kapoor, Simmonds, Lipkin (CR9) 2010; 84 Tamura, Peterson, Peterson, Stecher, Nei, Kumar (CR12) 2011; 28 Cotmore, Tattersall, Kerr, Cotmore, Bloom, Linden, Parrish (CR3) 2005 Li, Cotmore, Tattersall (CR10) 2013; 87 Belyi, Levine, Skalka (CR1) 2010; 2010 Drummond, Ho, Phillips, Rambaut (CR4) 2006; 4 van Regenmortel, Burke, Calisher, Dietzgen, Fauquet, Ghabrial, Jahrling, Johnson, Holbrook, Horzinek, Keil, Kuhn, Mahy, Martelli, Pringle, Rybicki, Skern, Tesh, Wahl-Jensen, Walker, Weaver (CR16) 2010; 155 Drummond, Rambaut (CR5) 2007; 7 Needleman, Wunsch (CR11) 1970; 48 Tattersall, Bergoin, Bloom, Brown, Linden, Muzyczka, Parrish, Tijssen, Fauquet, Mayo, Maniloff, Desselberger, Ball (CR13) 2005 van Regenmortel, Mahy (CR15) 2004; 10 A Kapoor (1914_CR9) 2010; 84 Q Huang (1914_CR8) 2012; 8 P Tijssen (1914_CR14) 2011 K Tamura (1914_CR12) 2011; 28 X Ge (1914_CR7) 2012; 86 SB Needleman (1914_CR11) 1970; 48 MH Regenmortel van (1914_CR16) 2010; 155 AJ Drummond (1914_CR4) 2006; 4 1914_CR2 P Tattersall (1914_CR13) 2005 AJ Drummond (1914_CR5) 2007; 7 SR Eddy (1914_CR6) 2011; 7 L Li (1914_CR10) 2013; 87 MHV Regenmortel van (1914_CR15) 2004; 10 VA Belyi (1914_CR1) 2010; 2010 SF Cotmore (1914_CR3) 2005
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insectivorous bats in China publication-title: J Virol doi: 10.1128/JVI.06671-11 – ident: CR2 – start-page: 353 year: 2005 end-page: 369 ident: CR13 article-title: Family publication-title: Virus taxonomy—eighth report of the International Committee on Taxonomy of viruses – volume: 87 start-page: 10501 year: 2013 end-page: 10514 ident: CR10 article-title: Parvoviral left-end hairpin ears are essential during infection for establishing a functional intranuclear transcription template and for efficient progeny genome encapsidation publication-title: J Virol doi: 10.1128/JVI.01393-13 – volume: 2010 start-page: 12458 issue: 84 year: 2010 end-page: 12462 ident: CR1 article-title: Sequences from ancestral single-stranded DNA viruses in vertebrate genomes: the parvoviridae and circoviridae are more than 40 to 50 million years old publication-title: J Virol doi: 10.1128/JVI.01789-10 – volume: 84 start-page: 12628 year: 2010 end-page: 12635 ident: CR9 article-title: Discovery and characterization of mammalian endogenous parvoviruses publication-title: J Virol doi: 10.1128/JVI.01732-10 – volume: 48 start-page: 443 year: 1970 end-page: 453 ident: CR11 article-title: A general method applicable to the search for similarities in the amino acid sequences of two proteins publication-title: J Mol Biol doi: 10.1016/0022-2836(70)90057-4 – volume: 155 start-page: 1909 year: 2010 end-page: 1919 ident: CR16 article-title: A proposal to change existing virus species names to non-Latinized binomials publication-title: Arch Virol doi: 10.1007/s00705-010-0831-9 – volume: 7 start-page: e1002195 year: 2011 ident: CR6 article-title: Accelerated profile HMM searches publication-title: PLoS Comput Biol doi: 10.1371/journal.pcbi.1002195 – volume: 8 start-page: e1002899 year: 2012 ident: CR8 article-title: Establishment of a reverse genetics system for studying human bocavirus in human airway epithelia publication-title: PLoS Pathog doi: 10.1371/journal.ppat.1002899 – volume: 10 start-page: 8 year: 2004 end-page: 13 ident: CR15 article-title: Emerging issues in virus taxonomy publication-title: Emerg Infect Dis doi: 10.3201/eid1001.030279 – start-page: 171 year: 2005 end-page: 181 ident: CR3 article-title: A rolling-hairpin strategy: basic mechanisms of DNA replication in the parvoviruses publication-title: Parvoviruses – volume: 7 start-page: 214 year: 2007 ident: 1914_CR5 publication-title: BMC Evol Biol doi: 10.1186/1471-2148-7-214 – volume: 7 start-page: e1002195 year: 2011 ident: 1914_CR6 publication-title: PLoS Comput Biol doi: 10.1371/journal.pcbi.1002195 – start-page: 353 volume-title: Virus taxonomy—eighth report of the International Committee on Taxonomy of viruses year: 2005 ident: 1914_CR13 – volume: 155 start-page: 1909 year: 2010 ident: 1914_CR16 publication-title: Arch Virol doi: 10.1007/s00705-010-0831-9 – volume: 28 start-page: 2731 year: 2011 ident: 1914_CR12 publication-title: Mol Biol Evol doi: 10.1093/molbev/msr121 – volume: 4 start-page: 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SubjectTerms	Ambidensovirus Arthropoda Biomedical and Life Sciences Biomedicine classification Densovirinae Densovirus genetics Genome, Viral host range hosts Immunology Infectious Diseases Medical Microbiology Medicine new species nucleotide sequences Parvoviridae Parvoviridae - classification Parvoviridae - genetics Parvovirinae Parvovirus Phylogenetics Phylogeny Proposals Proteins Protoparvovirus sequence homology Species Specificity Taxonomy Virology Virology Division News Viruses
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