Study of Archaeal Diversity in the Arctic Meltwater Lake Region
Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput....
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| Published in | Biology (Basel, Switzerland) Vol. 12; no. 7; p. 1023 |
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| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
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20.07.2023
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| Abstract | Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by Nitrososphaeraceae_unclassified and Candidatus_Nitrocosmicus, while the subtidal zone was dominated by Methanoregula. The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO2−-N), and nitrate nitrogen (NO3−-N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH4+-N, SiO32−-Si, MC, NO3−-N, and NO2−-N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, Woesearchaeales was found to be the hub archaea genus at every site. |
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| AbstractList | The Arctic is experiencing a significant temperature increase under the global warming trend. As a result, the Arctic permafrost is thawing, glacial meltwater is gathering, and the depressions are gradually forming lakes, affecting the composition and material cycles of the terrestrial ecosystems. Two meltwater lakes with different landscapes in the Ny-Ålesund region of the Arctic were taken as study objects. The structure of the archaeal community and the influence of soil physiochemical factors on the archaeal community were investigated. The differences in the archaeal community structure between the intertidal and subtidal zones of the two lakes were compared, and the reasons for the differences were analyzed and discussed. A redundancy analysis identified NH[sub.4] [sup.+], SiO[sub.3] [sup.2−], MC, NO[sub.3] [sup.−], and NO[sub.2] [sup.−] as key soil physicochemical factors that have significantly influenced the structure of the archaeal community. The hub archaea in the archaeal community were identified by weighted gene co-expression network analysis (WGCNA). The use of WGCNA in this study provides new ideas for future research on the microbial community structure. In the context of global warming, this study contributes to research on archaeal communities in Arctic meltwater lakes in response to climate change. Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by Nitrososphaeraceae_unclassified and Candidatus_Nitrocosmicus, while the subtidal zone was dominated by Methanoregula. The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO[sub.2] [sup.−]-N), and nitrate nitrogen (NO[sub.3] [sup.−]-N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH[sub.4] [sup.+]-N, SiO[sub.3] [sup.2−]-Si, MC, NO[sub.3] [sup.−]-N, and NO[sub.2] [sup.−]-N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, Woesearchaeales was found to be the hub archaea genus at every site. Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by Nitrososphaeraceae_unclassified and Candidatus_Nitrocosmicus, while the subtidal zone was dominated by Methanoregula. The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO2−-N), and nitrate nitrogen (NO3−-N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH4+-N, SiO32−-Si, MC, NO3−-N, and NO2−-N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, Woesearchaeales was found to be the hub archaea genus at every site. Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by Nitrososphaeraceae_unclassified and Candidatus_Nitrocosmicus, while the subtidal zone was dominated by Methanoregula. The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO₂⁻-N), and nitrate nitrogen (NO₃⁻-N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH₄⁺-N, SiO₃²⁻-Si, MC, NO₃⁻-N, and NO₂⁻-N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, Woesearchaeales was found to be the hub archaea genus at every site. Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by Nitrososphaeraceae_unclassified and Candidatus_Nitrocosmicus, while the subtidal zone was dominated by Methanoregula. The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO2--N), and nitrate nitrogen (NO3--N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH4+-N, SiO32--Si, MC, NO3--N, and NO2--N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, Woesearchaeales was found to be the hub archaea genus at every site.Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by Nitrososphaeraceae_unclassified and Candidatus_Nitrocosmicus, while the subtidal zone was dominated by Methanoregula. The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO2--N), and nitrate nitrogen (NO3--N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH4+-N, SiO32--Si, MC, NO3--N, and NO2--N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, Woesearchaeales was found to be the hub archaea genus at every site. Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by and Candidatus_ , while the subtidal zone was dominated by . The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO -N), and nitrate nitrogen (NO -N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH -N, SiO -Si, MC, NO -N, and NO -N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, was found to be the hub archaea genus at every site. Simple SummaryThe Arctic is experiencing a significant temperature increase under the global warming trend. As a result, the Arctic permafrost is thawing, glacial meltwater is gathering, and the depressions are gradually forming lakes, affecting the composition and material cycles of the terrestrial ecosystems. Two meltwater lakes with different landscapes in the Ny-Ålesund region of the Arctic were taken as study objects. The structure of the archaeal community and the influence of soil physiochemical factors on the archaeal community were investigated. The differences in the archaeal community structure between the intertidal and subtidal zones of the two lakes were compared, and the reasons for the differences were analyzed and discussed. A redundancy analysis identified NH4+, SiO32−, MC, NO3−, and NO2− as key soil physicochemical factors that have significantly influenced the structure of the archaeal community. The hub archaea in the archaeal community were identified by weighted gene co-expression network analysis (WGCNA). The use of WGCNA in this study provides new ideas for future research on the microbial community structure. In the context of global warming, this study contributes to research on archaeal communities in Arctic meltwater lakes in response to climate change.AbstractTwo typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by Nitrososphaeraceae_unclassified and Candidatus_Nitrocosmicus, while the subtidal zone was dominated by Methanoregula. The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO2−-N), and nitrate nitrogen (NO3−-N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH4+-N, SiO32−-Si, MC, NO3−-N, and NO2−-N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, Woesearchaeales was found to be the hub archaea genus at every site. |
| Audience | Academic |
| Author | Wang, Long Zheng, Li Li, Qinxin Qin, Yiling Yin, Xiaofei Xu, Xiaoyu Wang, Nengfei |
| AuthorAffiliation | 3 College of Chemistry and Chemical Engineering, Qingdao University, Qingdao 266071, China; liqinxina@163.com 4 Department of Bioengineering, College of Marine Sciences and Biological Engineering, Qingdao University of Science & Technology, Qingdao 266042, China; wanglong1505108440@163.com 1 First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China; qinyl2021@126.com (Y.Q.); zhengli@fio.org.cn (L.Z.); yxf@fio.org.cn (X.Y.) 2 School of Chemistry and Chemical Engineering, Linyi University, Linyi 276000, China; xiaoyuxu_xxy@163.com |
| AuthorAffiliation_xml | – name: 3 College of Chemistry and Chemical Engineering, Qingdao University, Qingdao 266071, China; liqinxina@163.com – name: 1 First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China; qinyl2021@126.com (Y.Q.); zhengli@fio.org.cn (L.Z.); yxf@fio.org.cn (X.Y.) – name: 4 Department of Bioengineering, College of Marine Sciences and Biological Engineering, Qingdao University of Science & Technology, Qingdao 266042, China; wanglong1505108440@163.com – name: 2 School of Chemistry and Chemical Engineering, Linyi University, Linyi 276000, China; xiaoyuxu_xxy@163.com |
| Author_xml | – sequence: 1 givenname: Yiling surname: Qin fullname: Qin, Yiling – sequence: 2 givenname: Nengfei surname: Wang fullname: Wang, Nengfei – sequence: 3 givenname: Li surname: Zheng fullname: Zheng, Li – sequence: 4 givenname: Qinxin surname: Li fullname: Li, Qinxin – sequence: 5 givenname: Long surname: Wang fullname: Wang, Long – sequence: 6 givenname: Xiaoyu surname: Xu fullname: Xu, Xiaoyu – sequence: 7 givenname: Xiaofei surname: Yin fullname: Yin, Xiaofei |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/37508452$$D View this record in MEDLINE/PubMed |
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| Keywords | Arctic Ny-Ålesund archaea diversity meltwater lakes WGCNA high-throughput sequencing soil physicochemical properties |
| Language | English |
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| Snippet | Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of... The Arctic is experiencing a significant temperature increase under the global warming trend. As a result, the Arctic permafrost is thawing, glacial meltwater... Simple SummaryThe Arctic is experiencing a significant temperature increase under the global warming trend. As a result, the Arctic permafrost is thawing,... |
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| SubjectTerms | archaea diversity Arctic Ny-Ålesund Arctic region Arctic research Climate change Community structure Crenarchaeota genes Global warming high-throughput sequencing Influence Lakes littoral zone Meltwater meltwater lakes Microorganisms nitrate nitrogen nitrite nitrogen Nitrogen Nitrogen dioxide Nutrients organic nitrogen Permafrost Quality control rRNA 16S Sediments snowmelt Software soil soil physicochemical properties Statistical analysis Temperature Terrestrial ecosystems Thawing Total organic carbon Water content WGCNA |
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| Title | Study of Archaeal Diversity in the Arctic Meltwater Lake Region |
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