A starting guide to root ecology strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements
In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face many important challenges to keep on generating cutting-edge, meaningful and integrated knowledge. Consideration of the below-ground components in plant...
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| Published in | The New phytologist Vol. 232; no. 3; pp. 973 - 1122 |
|---|---|
| Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Wiley
01.11.2021
Wiley Subscription Services, Inc John Wiley and Sons Inc |
| Subjects | |
| Online Access | Get full text |
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| Abstract | In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face many important challenges to keep on generating cutting-edge, meaningful and integrated knowledge. Consideration of the below-ground components in plant and ecosystem studies has been consistently called for in recent decades, but methodology is disparate and sometimes inappropriate. This handbook, based on the collective effort of a large team of experts, will improve trait comparisons across studies and integration of information across databases by providing standardised methods and controlled vocabularies. It is meant to be used not only as starting point by students and scientists who desire working on below-ground ecosystems, but also by experts for consolidating and broadening their views on multiple aspects of root ecology. Beyond the classical compilation of measurement protocols, we have synthesised recommendations from the literature to provide key background knowledge useful for: (1) defining below-ground plant entities and giving keys for their meaningful dissection, classification and naming beyond the classical fine-root vs coarse-root approach; (2) considering the specificity of root research to produce sound laboratory and field data; (3) describing typical, but overlooked steps for studying roots (e.g. root handling, cleaning and storage); and (4) gathering metadata necessary for the interpretation of results and their reuse. Most importantly, all root traits have been introduced with some degree of ecological context that will be a foundation for understanding their ecological meaning, their typical use and uncertainties, and some methodological and conceptual perspectives for future research. Considering all of this, we urge readers not to solely extract protocol recommendations for trait measurements from this work, but to take a moment to read and reflect on the extensive information contained in this broader guide to root ecology, including sections I–VII and the many introductions to each section and root trait description. Finally, it is critical to understand that a major aim of this guide is to help break down barriers between the many subdisciplines of root ecology and ecophysiology, broaden researchers’ views on the multiple aspects of root study and create favourable conditions for the inception of comprehensive experiments on the role of roots in plant and ecosystem functioning. |
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| AbstractList | In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face many important challenges to keep on generating cutting-edge, meaningful and integrated knowledge. Consideration of the below-ground components in plant and ecosystem studies has been consistently called for in recent decades, but methodology is disparate and sometimes inappropriate. This handbook, based on the collective effort of a large team of experts, will improve trait comparisons across studies and integration of information across databases by providing standardised methods and controlled vocabularies. It is meant to be used not only as starting point by students and scientists who desire working on below-ground ecosystems, but also by experts for consolidating and broadening their views on multiple aspects of root ecology. Beyond the classical compilation of measurement protocols, we have synthesised recommendations from the literature to provide key background knowledge useful for: (1) defining below-ground plant entities and giving keys for their meaningful dissection, classification and naming beyond the classical fine-root vs coarse-root approach; (2) considering the specificity of root research to produce sound laboratory and field data; (3) describing typical, but overlooked steps for studying roots (e.g. root handling, cleaning and storage); and (4) gathering metadata necessary for the interpretation of results and their reuse. Most importantly, all root traits have been introduced with some degree of ecological context that will be a foundation for understanding their ecological meaning, their typical use and uncertainties, and some methodological and conceptual perspectives for future research. Considering all of this, we urge readers not to solely extract protocol recommendations for trait measurements from this work, but to take a moment to read and reflect on the extensive information contained in this broader guide to root ecology, including sections I-VII and the many introductions to each section and root trait description. Finally, it is critical to understand that a major aim of this guide is to help break down barriers between the many subdisciplines of root ecology and ecophysiology, broaden researchers' views on the multiple aspects of root study and create favourable conditions for the inception of comprehensive experiments on the role of roots in plant and ecosystem functioning. In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face many important challenges to keep on generating cutting-edge, meaningful and integrated knowledge. Consideration of the below-ground components in plant and ecosystem studies has been consistently called for in recent decades, but methodology is disparate and sometimes inappropriate. This handbook, based on the collective effort of a large team of experts, will improve trait comparisons across studies and integration of information across databases by providing standardised methods and controlled vocabularies. It is meant to be used not only as starting point by students and scientists who desire working on below-ground ecosystems, but also by experts for consolidating and broadening their views on multiple aspects of root ecology. Beyond the classical compilation of measurement protocols, we have synthesised recommendations from the literature to provide key background knowledge useful for: (1) defining below-ground plant entities and giving keys for their meaningful dissection, classification and naming beyond the classical fine-root vs coarse-root approach; (2) considering the specificity of root research to produce sound laboratory and field data; (3) describing typical, but overlooked steps for studying roots (e.g. root handling, cleaning and storage); and (4) gathering metadata necessary for the interpretation of results and their reuse. Most importantly, all root traits have been introduced with some degree of ecological context that will be a foundation for understanding their ecological meaning, their typical use and uncertainties, and some methodological and conceptual perspectives for future research. Considering all of this, we urge readers not to solely extract protocol recommendations for trait measurements from this work, but to take a moment to read and reflect on the extensive information contained in this broader guide to root ecology, including sections I-VII and the many introductions to each section and root trait description. Finally, it is critical to understand that a major aim of this guide is to help break down barriers between the many subdisciplines of root ecology and ecophysiology, broaden researchers' views on the multiple aspects of root study and create favourable conditions for the inception of comprehensive experiments on the role of roots in plant and ecosystem functioning.In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face many important challenges to keep on generating cutting-edge, meaningful and integrated knowledge. Consideration of the below-ground components in plant and ecosystem studies has been consistently called for in recent decades, but methodology is disparate and sometimes inappropriate. This handbook, based on the collective effort of a large team of experts, will improve trait comparisons across studies and integration of information across databases by providing standardised methods and controlled vocabularies. It is meant to be used not only as starting point by students and scientists who desire working on below-ground ecosystems, but also by experts for consolidating and broadening their views on multiple aspects of root ecology. Beyond the classical compilation of measurement protocols, we have synthesised recommendations from the literature to provide key background knowledge useful for: (1) defining below-ground plant entities and giving keys for their meaningful dissection, classification and naming beyond the classical fine-root vs coarse-root approach; (2) considering the specificity of root research to produce sound laboratory and field data; (3) describing typical, but overlooked steps for studying roots (e.g. root handling, cleaning and storage); and (4) gathering metadata necessary for the interpretation of results and their reuse. Most importantly, all root traits have been introduced with some degree of ecological context that will be a foundation for understanding their ecological meaning, their typical use and uncertainties, and some methodological and conceptual perspectives for future research. Considering all of this, we urge readers not to solely extract protocol recommendations for trait measurements from this work, but to take a moment to read and reflect on the extensive information contained in this broader guide to root ecology, including sections I-VII and the many introductions to each section and root trait description. Finally, it is critical to understand that a major aim of this guide is to help break down barriers between the many subdisciplines of root ecology and ecophysiology, broaden researchers' views on the multiple aspects of root study and create favourable conditions for the inception of comprehensive experiments on the role of roots in plant and ecosystem functioning. Summary In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face many important challenges to keep on generating cutting‐edge, meaningful and integrated knowledge. Consideration of the below‐ground components in plant and ecosystem studies has been consistently called for in recent decades, but methodology is disparate and sometimes inappropriate. This handbook, based on the collective effort of a large team of experts, will improve trait comparisons across studies and integration of information across databases by providing standardised methods and controlled vocabularies. It is meant to be used not only as starting point by students and scientists who desire working on below‐ground ecosystems, but also by experts for consolidating and broadening their views on multiple aspects of root ecology. Beyond the classical compilation of measurement protocols, we have synthesised recommendations from the literature to provide key background knowledge useful for: (1) defining below‐ground plant entities and giving keys for their meaningful dissection, classification and naming beyond the classical fine‐root vs coarse‐root approach; (2) considering the specificity of root research to produce sound laboratory and field data; (3) describing typical, but overlooked steps for studying roots (e.g. root handling, cleaning and storage); and (4) gathering metadata necessary for the interpretation of results and their reuse. Most importantly, all root traits have been introduced with some degree of ecological context that will be a foundation for understanding their ecological meaning, their typical use and uncertainties, and some methodological and conceptual perspectives for future research. Considering all of this, we urge readers not to solely extract protocol recommendations for trait measurements from this work, but to take a moment to read and reflect on the extensive information contained in this broader guide to root ecology, including sections I–VII and the many introductions to each section and root trait description. Finally, it is critical to understand that a major aim of this guide is to help break down barriers between the many subdisciplines of root ecology and ecophysiology, broaden researchers’ views on the multiple aspects of root study and create favourable conditions for the inception of comprehensive experiments on the role of roots in plant and ecosystem functioning. |
| Author | Klimešová, Jitka de Moraes, Moemy Gomes Bagniewska-Zadworna, Agnieszka Gessler, Arthur Meier, Ina C. Poorter, Hendrik Cornelissen, Johannes H. C. Janeček, Štěpán Sun, Tao Garnier, Eric Blancaflor, Elison B. Wurzburger, Nina Lambers, Hans McCormack, M. Luke Weemstra, Monique Postma, Johannes A. Batterman, Sarah A. Mommer, Liesje Rose, Laura Iversen, Colleen M. Roumet, Catherine Hobbie, Sarah E. Zadworny, Marcin Bengough, A. Glyn Pagès, Loïc Tharayil, Nishanth Picon-Cochard, Catherine York, Larry M. Weigelt, Alexandra Valverde-Barrantes, Oscar J. Salmon, Verity Rewald, Boris Scherer-Lorenzen, Michael Adams, Thomas S. Brunner, Ivano Stokes, Alexia Ryser, Peter Comas, Louise H. Freschet, Grégoire T. Soudzilovskaia, Nadejda A. |
| AuthorAffiliation | 5 USDA‐ARS Water Management Research Unit 2150 Centre Avenue, Bldg D, Suite 320 Fort Collins CO 80526 USA 8 Institute of Dendrology Polish Academy of Sciences Parkowa 5 62‐035 Kórnik Poland 12 Department of General Botany Institute of Experimental Biology Faculty of Biology Adam Mickiewicz University Uniwersytetu Poznańskiego 6 61-614 Poznań Poland 37 School of Biological Sciences The University of Western Australia 35 Stirling Highway Crawley (Perth) WA 6009 Australia 1 CEFE Univ Montpellier, CNRS, EPHE, IRD 1919 route de Mende Montpellier 34293 France 31 Systematic Botany and Functional Biodiversity Institute of Biology Leipzig University Johannisallee 21-23 Leipzig 04103 Germany 3 UR 1115 PSH Centre PACA, site Agroparc INRAE 84914 Avignon cedex 9 France 4 Environmental Sciences Division and Climate Change Science Institute Oak Ridge National Laboratory Oak Ridge TN 37831 USA 2 Station d’Ecologie Théorique et Expérimentale CNRS 2 route du CNRS 09200 Moulis France 15 Noble Research Institute, |
| AuthorAffiliation_xml | – name: 30 International Center for Tropical Botany Department of Biological Sciences Florida International University Miami FL 33199 USA – name: 38 School of Biological Sciences The University of Western Australia Crawley (Perth) WA Australia – name: 12 Department of General Botany Institute of Experimental Biology Faculty of Biology Adam Mickiewicz University Uniwersytetu Poznańskiego 6 61-614 Poznań Poland – name: 28 INRAE AMAP CIRAD, IRD CNRS University of Montpellier Montpellier 34000 France – name: 7 Department of Functional Ecology Institute of Botany CAS Dukelska 135 37901 Trebon Czech Republic – name: 35 Cary Institute of Ecosystem Studies Millbrook NY 12545 USA – name: 19 Institute of Terrestrial Ecosystems ETH Zurich 8092 Zurich Switzerland – name: 6 Department of Forest and Soil Sciences University of Natural Resources and Life Sciences Vienna 1190 Austria – name: 29 Institute of Applied Ecology Chinese Academy of Sciences Shenyang 110016 China – name: 41 Center for Tree Science Morton Arboretum, 4100 Illinois Rt. 53 Lisle IL 60532 USA – name: 20 Department of Ecology, Evolution and Behavior University of Minnesota St Paul MN 55108 USA – name: 22 Plant Ecology and Nature Conservation Group Department of Environmental Sciences Wageningen University and Research PO Box 47 6700 AA Wageningen the Netherlands – name: 33 Biosciences Division and Center for Bioenergy Innovation Oak Ridge National Laboratory Oak Ridge TN 37831 USA – name: 14 School of Science and Engineering University of Dundee Dundee, DD1 4HN UK – name: 5 USDA‐ARS Water Management Research Unit 2150 Centre Avenue, Bldg D, Suite 320 Fort Collins CO 80526 USA – name: 23 Université Clermont Auvergne INRAE VetAgro Sup UREP 63000 Clermont-Ferrand France – name: 9 Plant Sciences (IBG‐2) Forschungszentrum Jülich GmbH D‐52425 Jülich Germany – name: 39 Environmental Sciences Division and Climate Change Science Institute Oak Ridge National Laboratory Oak Ridge TN 37831 USA – name: 21 Functional Forest Ecology University of Hamburg Haidkrugsweg 1 22885 Barsbütel Germany – name: 37 School of Biological Sciences The University of Western Australia 35 Stirling Highway Crawley (Perth) WA 6009 Australia – name: 13 The James Hutton Institute Invergowrie, Dundee, DD2 5DA UK – name: 1 CEFE Univ Montpellier, CNRS, EPHE, IRD 1919 route de Mende Montpellier 34293 France – name: 34 School of Geography and Priestley International Centre for Climate University of Leeds Leeds LS2 9JT UK – name: 40 Department of Plant and Environmental Sciences Clemson University Clemson SC 29634 USA – name: 27 Environmental Biology Department Institute of Environmental Sciences CML Leiden University Leiden 2300 RA the Netherlands – name: 10 Department of Biological Sciences Macquarie University North Ryde NSW 2109 Australia – name: 8 Institute of Dendrology Polish Academy of Sciences Parkowa 5 62‐035 Kórnik Poland – name: 15 Noble Research Institute, LLC 2510 Sam Noble Parkway Ardmore OK 73401 USA – name: 3 UR 1115 PSH Centre PACA, site Agroparc INRAE 84914 Avignon cedex 9 France – name: 26 Geobotany Faculty of Biology University of Freiburg Schänzlestr. 1 79104 Freiburg Germany – name: 24 Senckenberg Biodiversity and Climate Research Centre (BiK-F) Senckenberganlage 25 60325 Frankfurt am Main Germany – name: 31 Systematic Botany and Functional Biodiversity Institute of Biology Leipzig University Johannisallee 21-23 Leipzig 04103 Germany – name: 16 Forest Soils and Biogeochemistry Swiss Federal Research Institute WSL Zürcherstr. 111 8903 Birmensdorf Switzerland – name: 4 Environmental Sciences Division and Climate Change Science Institute Oak Ridge National Laboratory Oak Ridge TN 37831 USA – name: 32 Odum School of Ecology University of Georgia 140 E. Green Street Athens GA 30602 USA – name: 36 Department of Botany Institute of Biological Sciences Federal University of Goiás 19 74690-900 Goiânia, Goiás Brazil – name: 2 Station d’Ecologie Théorique et Expérimentale CNRS 2 route du CNRS 09200 Moulis France – name: 17 Department of Ecological Science Faculty of Science Vrije Universiteit Amsterdam De Boelelaan 1085 Amsterdam 1081 HV the Netherlands – name: 25 Laurentian University 935 Ramsey Lake Road Sudbury ON P3E 2C6 Canada – name: 11 Department of Plant Sciences The Pennsylvania State University University Park PA 16802 USA – name: 18 Forest Dynamics Swiss Federal Research Institute WSL Zürcherstr. 111 8903 Birmensdorf Switzerland |
| Author_xml | – sequence: 1 givenname: Grégoire T. surname: Freschet fullname: Freschet, Grégoire T. – sequence: 2 givenname: Loïc surname: Pagès fullname: Pagès, Loïc – sequence: 3 givenname: Colleen M. surname: Iversen fullname: Iversen, Colleen M. – sequence: 4 givenname: Louise H. surname: Comas fullname: Comas, Louise H. – sequence: 5 givenname: Boris surname: Rewald fullname: Rewald, Boris – sequence: 6 givenname: Catherine surname: Roumet fullname: Roumet, Catherine – sequence: 7 givenname: Jitka surname: Klimešová fullname: Klimešová, Jitka – sequence: 8 givenname: Marcin surname: Zadworny fullname: Zadworny, Marcin – sequence: 9 givenname: Hendrik surname: Poorter fullname: Poorter, Hendrik – sequence: 10 givenname: Johannes A. surname: Postma fullname: Postma, Johannes A. – sequence: 11 givenname: Thomas S. surname: Adams fullname: Adams, Thomas S. – sequence: 12 givenname: Agnieszka surname: Bagniewska-Zadworna fullname: Bagniewska-Zadworna, Agnieszka – sequence: 13 givenname: A. Glyn surname: Bengough fullname: Bengough, A. Glyn – sequence: 14 givenname: Elison B. surname: Blancaflor fullname: Blancaflor, Elison B. – sequence: 15 givenname: Ivano surname: Brunner fullname: Brunner, Ivano – sequence: 16 givenname: Johannes H. C. surname: Cornelissen fullname: Cornelissen, Johannes H. C. – sequence: 17 givenname: Eric surname: Garnier fullname: Garnier, Eric – sequence: 18 givenname: Arthur surname: Gessler fullname: Gessler, Arthur – sequence: 19 givenname: Sarah E. surname: Hobbie fullname: Hobbie, Sarah E. – sequence: 20 givenname: Ina C. surname: Meier fullname: Meier, Ina C. – sequence: 21 givenname: Liesje surname: Mommer fullname: Mommer, Liesje – sequence: 22 givenname: Catherine surname: Picon-Cochard fullname: Picon-Cochard, Catherine – sequence: 23 givenname: Laura surname: Rose fullname: Rose, Laura – sequence: 24 givenname: Peter surname: Ryser fullname: Ryser, Peter – sequence: 25 givenname: Michael surname: Scherer-Lorenzen fullname: Scherer-Lorenzen, Michael – sequence: 26 givenname: Nadejda A. surname: Soudzilovskaia fullname: Soudzilovskaia, Nadejda A. – sequence: 27 givenname: Alexia surname: Stokes fullname: Stokes, Alexia – sequence: 28 givenname: Tao surname: Sun fullname: Sun, Tao – sequence: 29 givenname: Oscar J. surname: Valverde-Barrantes fullname: Valverde-Barrantes, Oscar J. – sequence: 30 givenname: Monique surname: Weemstra fullname: Weemstra, Monique – sequence: 31 givenname: Alexandra surname: Weigelt fullname: Weigelt, Alexandra – sequence: 32 givenname: Nina surname: Wurzburger fullname: Wurzburger, Nina – sequence: 33 givenname: Larry M. surname: York fullname: York, Larry M. – sequence: 34 givenname: Sarah A. surname: Batterman fullname: Batterman, Sarah A. – sequence: 35 givenname: Moemy Gomes surname: de Moraes fullname: de Moraes, Moemy Gomes – sequence: 36 givenname: Štěpán surname: Janeček fullname: Janeček, Štěpán – sequence: 37 givenname: Hans surname: Lambers fullname: Lambers, Hans – sequence: 38 givenname: Verity surname: Salmon fullname: Salmon, Verity – sequence: 39 givenname: Nishanth surname: Tharayil fullname: Tharayil, Nishanth – sequence: 40 givenname: M. Luke surname: McCormack fullname: McCormack, M. Luke |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/34608637$$D View this record in MEDLINE/PubMed https://hal.science/hal-03379708$$DView record in HAL https://www.osti.gov/servlets/purl/1827055$$D View this record in Osti.gov |
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| Snippet | In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face many... Summary In the context of a recent massive increase in research on plant root functions and their impact on the environment, root ecologists currently face... |
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| SubjectTerms | BASIC BIOLOGICAL SCIENCES below-ground ecology Classification Cleaning Community Resources Context Databases, Factual dissection Ecological function Ecologists Ecology Ecophysiology Ecosystem Ecosystem studies Ecosystems Environmental impact Environmental Sciences Experts fine roots Forum handbook metadata Phenotype plant root functions Plant roots Plants protocol root classification root ecology root traits Roots Specificity Storage trait measurements |
| Subtitle | strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements |
| Title | A starting guide to root ecology |
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