A high-resolution anatomical ontology of the developing murine genitourinary tract

Cataloguing gene expression during development of the genitourinary tract will increase our understanding not only of this process but also of congenital defects and disease affecting this organ system. We have developed a high-resolution ontology with which to describe the subcompartments of the de...

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Published inGene Expression Patterns Vol. 7; no. 6; pp. 680 - 699
Main Authors Little, Melissa H., Brennan, Jane, Georgas, Kylie, Davies, Jamie A., Davidson, Duncan R., Baldock, Richard A., Beverdam, Annemiek, Bertram, John F., Capel, Blanche, Chiu, Han Sheng, Clements, Dave, Cullen-McEwen, Luise, Fleming, Jean, Gilbert, Thierry, Herzlinger, Doris, Houghton, Derek, Kaufman, Matt H., Kleymenova, Elena, Koopman, Peter A., Lewis, Alfor G., McMahon, Andrew P., Mendelsohn, Cathy L., Mitchell, Eleanor K., Rumballe, Bree A., Sweeney, Derina E., Valerius, M. Todd, Yamada, Gen, Yang, Yiya, Yu, Jing
Format Journal Article
LanguageEnglish
Published Netherlands Elsevier B.V 01.06.2007
Subjects
Anatomy
Animals
Annotation
Atlas of development
Bladder
Clitoris - growth & development
Congenital defects
Endoderm - physiology
Female
Gene expression
Gene Expression Regulation, Developmental
Genital tubercle
Genitourinary development
Gonad
Kidney
Kidney development
Male
Mesoderm - physiology
Mice - embryology
Mice - genetics
Mice - growth & development
Nephrons - embryology
Nephrons - growth & development
Ontology
Ovary
Partonomic ontology
Penis - growth & development
Renal development
Reproductive development
RNA in situ hybridisation
Scrotum - growth & development
Sexual Maturation
Testis
Ureter
Urethra
Urinary development
Urogenital System - anatomy & histology
Urogenital System - growth & development
Testis
Urinary development
Ontology
Congenital defects
Bladder
Genital tubercle
Gene expression
Anatomy
Reproductive development
Kidney
Annotation
Ovary
Atlas of development
RNA in situ hybridisation
Genitourinary development
Urethra
Gonad
Database
Renal development
Ureter
Partonomic ontology
Kidney development
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Abstract Cataloguing gene expression during development of the genitourinary tract will increase our understanding not only of this process but also of congenital defects and disease affecting this organ system. We have developed a high-resolution ontology with which to describe the subcompartments of the developing murine genitourinary tract. This ontology incorporates what can be defined histologically and begins to encompass other structures and cell types already identified at the molecular level. The ontology is being used to annotate in situ hybridisation data generated as part of the Genitourinary Development Molecular Anatomy Project (GUDMAP), a publicly available data resource on gene and protein expression during genitourinary development. The GUDMAP ontology encompasses Theiler stage (TS) 17–27 of development as well as the sexually mature adult. It has been written as a partonomic, text-based, hierarchical ontology that, for the embryological stages, has been developed as a high-resolution expansion of the existing Edinburgh Mouse Atlas Project (EMAP) ontology. It also includes group terms for well-characterised structural and/or functional units comprising several sub-structures, such as the nephron and juxtaglomerular complex. Each term has been assigned a unique identification number. Synonyms have been used to improve the success of query searching and maintain wherever possible existing EMAP terms relating to this organ system. We describe here the principles and structure of the ontology and provide representative diagrammatic, histological, and whole mount and section RNA in situ hybridisation images to clarify the terms used within the ontology. Visual examples of how terms appear in different specimen types are also provided.
AbstractList Cataloguing gene expression during development of the genitourinary tract will increase our understanding not only of this process but also of congenital defects and disease affecting this organ system. We have developed a high-resolution ontology with which to describe the subcompartments of the developing murine genitourinary tract. This ontology incorporates what can be defined histologically and begins to encompass other structures and cell types already identified at the molecular level. The ontology is being used to annotate in situ hybridisation data generated as part of the Genitourinary Development Molecular Anatomy Project (GUDMAP), a publicly available data resource on gene and protein expression during genitourinary development. The GUDMAP ontology encompasses Theiler stage (TS) 17-27 of development as well as the sexually mature adult. It has been written as a partonomic, text-based, hierarchical ontology that, for the embryological stages, has been developed as a high-resolution expansion of the existing Edinburgh Mouse Atlas Project (EMAP) ontology. It also includes group terms for well-characterised structural and/or functional units comprising several sub-structures, such as the nephron and juxtaglomerular complex. Each term has been assigned a unique identification number. Synonyms have been used to improve the success of query searching and maintain wherever possible existing EMAP terms relating to this organ system. We describe here the principles and structure of the ontology and provide representative diagrammatic, histological, and whole mount and section RNA in situ hybridisation images to clarify the terms used within the ontology. Visual examples of how terms appear in different specimen types are also provided.
Cataloguing gene expression during development of the genitourinary tract will increase our understanding not only of this process but also of congenital defects and disease affecting this organ system. We have developed a high-resolution ontology with which to describe the subcompartments of the developing murine genitourinary tract. This ontology incorporates what can be defined histologically and begins to encompass other structures and cell types already identified at the molecular level. The ontology is being used to annotate in situ hybridisation data generated as part of the Genitourinary Development Molecular Anatomy Project (GUDMAP), a publicly available data resource on gene and protein expression during genitourinary development. The GUDMAP ontology encompasses Theiler stage (TS) 17 to 27 of development as well as the sexually mature adult. It has been written as a partonomic, text-based, hierarchical ontology that, for the embryological stages, has been developed as a high-resolution expansion of the existing Edinburgh Mouse Atlas Project (EMAP) ontology. It also includes group terms for well-characterised structural and/or functional units comprising several sub-structures, such as the nephron and juxtaglomerular complex. Each term has been assigned a unique identification number. Synonyms have been used to improve the success of query searching and maintain wherever possible existing EMAP terms relating to this organ system. We describe here the principles and structure of the ontology and provide representative diagrammatic, histological, and whole mount and section RNA in situ hybridisation images to clarify the terms used within the ontology. Visual examples of how terms appear in different specimen types are also provided.
Cataloguing gene expression during development of the genitourinary tract will increase our understanding not only of this process but also of congenital defects and disease affecting this organ system. We have developed a high-resolution ontology with which to describe the subcompartments of the developing murine genitourinary tract. This ontology incorporates what can be defined histologically and begins to encompass other structures and cell types already identified at the molecular level. The ontology is being used to annotate in situ hybridisation data generated as part of the Genitourinary Development Molecular Anatomy Project (GUDMAP), a publicly available data resource on gene and protein expression during genitourinary development. The GUDMAP ontology encompasses Theiler stage (TS) 17–27 of development as well as the sexually mature adult. It has been written as a partonomic, text-based, hierarchical ontology that, for the embryological stages, has been developed as a high-resolution expansion of the existing Edinburgh Mouse Atlas Project (EMAP) ontology. It also includes group terms for well-characterised structural and/or functional units comprising several sub-structures, such as the nephron and juxtaglomerular complex. Each term has been assigned a unique identification number. Synonyms have been used to improve the success of query searching and maintain wherever possible existing EMAP terms relating to this organ system. We describe here the principles and structure of the ontology and provide representative diagrammatic, histological, and whole mount and section RNA in situ hybridisation images to clarify the terms used within the ontology. Visual examples of how terms appear in different specimen types are also provided.
Author Herzlinger, Doris
Gilbert, Thierry
Capel, Blanche
Little, Melissa H.
Davidson, Duncan R.
Sweeney, Derina E.
Houghton, Derek
Clements, Dave
McMahon, Andrew P.
Georgas, Kylie
Mitchell, Eleanor K.
Yang, Yiya
Chiu, Han Sheng
Kaufman, Matt H.
Baldock, Richard A.
Lewis, Alfor G.
Kleymenova, Elena
Valerius, M. Todd
Yamada, Gen
Beverdam, Annemiek
Fleming, Jean
Davies, Jamie A.
Koopman, Peter A.
Brennan, Jane
Cullen-McEwen, Luise
Mendelsohn, Cathy L.
Rumballe, Bree A.
Bertram, John F.
Yu, Jing
AuthorAffiliation 6 Eskitis Institute of Cell and Molecular Therapies, Griffith University, Brisbane, Australia
5 Department of Cell Biology, Duke University Medical Centre, Durham, NC, USA
11 Centre for Animal Resources and Development (CARD), Kumamoto University Honjo, Kumamoto, Japan
2 Centre for Integrative Physiology, Edinburgh University, Edinburgh, UK
8 CIIT Centers for Health Research, Research Triangle Park, NC 27709, USA
9 Division of Pediatric Urology, Cincinnati Children’s Hospital Research Foundation, Cincinnati, USA
7 Department of Urology and Pathology, Columbia University, New York, USA
10 Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA
1 Institute for Molecular Bioscience, University of Queensland, Brisbane, 4072, Australia
3 MRC Human Genetics Unit, Western General Hospital, Edinburgh, UK
4 Department of Anatomy and Cell Biology, Monash University, Melbourne, Australia
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/17452023$$D View this record in MEDLINE/PubMed
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Cites_doi 10.1093/bioinformatics/btg400
10.1152/ajprenal.00369.2004
10.1002/dvdy.20807
10.1385/NI:1:4:309
10.1016/S0022-5320(75)80013-X
10.1002/dvg.20258
10.1038/ng1645
10.1016/S0012-1606(03)00391-9
10.1006/dbio.2002.0668
10.1016/j.modgep.2004.08.005
10.1002/1097-0177(2000)9999:9999<::AID-DVDY1072>3.0.CO;2-I
10.1177/002215549804601008
10.1002/dvdy.20740
10.1007/978-1-4419-8995-6_10
10.1093/jb/mvi087
10.1681/ASN.2005020172
10.1046/j.1432-0436.2003.7108001.x
10.1016/j.modgep.2005.10.008
10.1016/S0925-4773(98)00069-0
10.1016/S0960-9822(06)00415-5
10.1242/dev.124.7.1293
10.1097/01.ju.0000092537.96414.4a
10.1016/S0022-5320(80)90074-X
10.1038/nrg1225
10.1097/00005392-200210020-00048
10.1002/mrd.20105
10.1242/dev.109.4.911
10.1242/dev.00846
10.1242/dev.128.21.4241
10.1002/dvdy.1134
10.1016/S0090-4295(02)01874-5
10.1186/1471-2105-5-184
10.1038/348450a0
10.1016/S0925-4773(99)00047-7
10.1242/dev.00666
10.1172/JCI20665
10.1242/dev.127.11.2471
10.1002/j.1460-2075.1989.tb08392.x
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ISSN 1567-133X
IngestDate Tue Sep 17 21:25:28 EDT 2024
Wed Dec 04 14:24:51 EST 2024
Fri Oct 25 09:15:26 EDT 2024
Fri Dec 06 02:44:33 EST 2024
Wed Oct 16 00:43:28 EDT 2024
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Issue 6
Keywords Testis
Urinary development
Ontology
Congenital defects
Bladder
Genital tubercle
Gene expression
Anatomy
Reproductive development
Kidney
Annotation
Ovary
Atlas of development
RNA in situ hybridisation
Genitourinary development
Urethra
Gonad
Database
Renal development
Ureter
Partonomic ontology
Kidney development
Language English
License https://www.elsevier.com/tdm/userlicense/1.0
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Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
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content type line 23
major contributors
INSERM, Paris
OpenAccessLink https://europepmc.org/articles/pmc2117077?pdf=render
PMID 17452023
PQID 19410388
PQPubID 23462
PageCount 20
ParticipantIDs pubmedcentral_primary_oai_pubmedcentral_nih_gov_2117077
proquest_miscellaneous_70559008
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crossref_primary_10_1016_j_modgep_2007_03_002
pubmed_primary_17452023
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PublicationCentury 2000
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PublicationDateYYYYMMDD 2007-06-01
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  year: 2007
  text: 2007-06-01
  day: 01
PublicationDecade 2000
PublicationPlace Netherlands
PublicationPlace_xml – name: Netherlands
PublicationTitle Gene Expression Patterns
PublicationTitleAlternate Gene Expr Patterns
PublicationYear 2007
Publisher Elsevier B.V
Publisher_xml – name: Elsevier B.V
References Perriton (bib30) 2002; 247
Blomqvist (bib4) 2004; 113
Gyftopoulos (bib12) 2002; 60
Kaobayashi, Behringer (bib17) 2003; 4
Orr-Urtreger (bib28) 1990; 109
Kaufman (bib18) 1994
Menke (bib25) 2003; 262
Chen, Al-Awqati (bib10) 2005; 288
Haraguchi (bib13) 2000; 127
Potter (bib31) 1972; 175
Burger (bib7) 2004; 20
Bard, Kaufman, Dubreuil, Brune, Burger, Baldock, Davidson (bib2) 1998; 74
Hoy (bib15) 2005; 16
Yamada (bib41) 2006; 235
Haraguchi (bib14) 2001; 128
Martinez, Georgas, Challen, Rumballe, Davis, Taylor, Teasdale, Grimmond, Little (bib24) 2006; 235
Suzuki (bib35) 2003; 131
Theiler (bib37) 1989
Suzuki (bib36) 2004; 545
Yamada (bib40) 2003; 71
Johkura (bib16) 1998; 46
Pepling (bib29) 2006; 44
Batourina (bib3) 2005; 37
Bullejos, Koopman (bib5) 2001; 221
Marlier, Gilbert (bib22) 2004; 5
Martineau (bib23) 1997; 7
Yin, Ma (bib42) 2006; 137
Bullejos, Koopman (bib6) 2004; 68
Baldock (bib1) 2003; 1
Weizer (bib39) 2002; 170
Mitchell (bib26) 2006; 6
Nakai (bib27) 2003; 130
Warne (bib38) 2002; 168
Reeves, Caulfield, Farquhar (bib32) 1978; 39
Scholer (bib34) 1989; 8
Saino (bib33) 1997; 124
Capel (bib9) 1999; 84
Koopman (bib19) 1990; 348
Larsson (bib20) 1975; 51
Burger (bib8) 2004; 5
Georgas (bib11) 2000; 219
Larsson, Maunsbach (bib21) 1980; 2
Gene Expr Patterns. 2007 Dec;8(1):47-50
Chen (10.1016/j.modgep.2007.03.002_bib10) 2005; 288
Gyftopoulos (10.1016/j.modgep.2007.03.002_bib12) 2002; 60
Mitchell (10.1016/j.modgep.2007.03.002_bib26) 2006; 6
Bard (10.1016/j.modgep.2007.03.002_bib2) 1998; 74
Batourina (10.1016/j.modgep.2007.03.002_bib3) 2005; 37
Martineau (10.1016/j.modgep.2007.03.002_bib23) 1997; 7
Suzuki (10.1016/j.modgep.2007.03.002_bib35) 2003; 131
Georgas (10.1016/j.modgep.2007.03.002_bib11) 2000; 219
Bullejos (10.1016/j.modgep.2007.03.002_bib6) 2004; 68
Pepling (10.1016/j.modgep.2007.03.002_bib29) 2006; 44
Burger (10.1016/j.modgep.2007.03.002_bib7) 2004; 20
Larsson (10.1016/j.modgep.2007.03.002_bib21) 1980; 2
Bullejos (10.1016/j.modgep.2007.03.002_bib5) 2001; 221
Scholer (10.1016/j.modgep.2007.03.002_bib34) 1989; 8
Perriton (10.1016/j.modgep.2007.03.002_bib30) 2002; 247
Saino (10.1016/j.modgep.2007.03.002_bib33) 1997; 124
Weizer (10.1016/j.modgep.2007.03.002_bib39) 2002; 170
Yamada (10.1016/j.modgep.2007.03.002_bib40) 2003; 71
Yamada (10.1016/j.modgep.2007.03.002_bib41) 2006; 235
Menke (10.1016/j.modgep.2007.03.002_bib25) 2003; 262
Marlier (10.1016/j.modgep.2007.03.002_bib22) 2004; 5
Nakai (10.1016/j.modgep.2007.03.002_bib27) 2003; 130
Hoy (10.1016/j.modgep.2007.03.002_bib15) 2005; 16
Capel (10.1016/j.modgep.2007.03.002_bib9) 1999; 84
Theiler (10.1016/j.modgep.2007.03.002_bib37) 1989
Burger (10.1016/j.modgep.2007.03.002_bib8) 2004; 5
Haraguchi (10.1016/j.modgep.2007.03.002_bib13) 2000; 127
Kaufman (10.1016/j.modgep.2007.03.002_bib18) 1994
Martinez (10.1016/j.modgep.2007.03.002_bib24) 2006; 235
Potter (10.1016/j.modgep.2007.03.002_bib31) 1972; 175
Haraguchi (10.1016/j.modgep.2007.03.002_bib14) 2001; 128
Reeves (10.1016/j.modgep.2007.03.002_bib32) 1978; 39
Suzuki (10.1016/j.modgep.2007.03.002_bib36) 2004; 545
Larsson (10.1016/j.modgep.2007.03.002_bib20) 1975; 51
Koopman (10.1016/j.modgep.2007.03.002_bib19) 1990; 348
Warne (10.1016/j.modgep.2007.03.002_bib38) 2002; 168
Kaobayashi (10.1016/j.modgep.2007.03.002_bib17) 2003; 4
Baldock (10.1016/j.modgep.2007.03.002_bib1) 2003; 1
Blomqvist (10.1016/j.modgep.2007.03.002_bib4) 2004; 113
Johkura (10.1016/j.modgep.2007.03.002_bib16) 1998; 46
Yin (10.1016/j.modgep.2007.03.002_bib42) 2006; 137
Orr-Urtreger (10.1016/j.modgep.2007.03.002_bib28) 1990; 109
References_xml – volume: 137
  start-page: 677
  year: 2006
  end-page: 683
  ident: bib42
  article-title: Development of the mammalian female reproductive tract
  publication-title: J. Biochem.
  contributor:
    fullname: Ma
– volume: 46
  start-page: 1161
  year: 1998
  end-page: 1174
  ident: bib16
  article-title: Immunohistochemical localization of peroxisomal enzymes in developing rat kidney tissues
  publication-title: J. Histochem. Cytochem.
  contributor:
    fullname: Johkura
– year: 1994
  ident: bib18
  article-title: The Atlas of Mouse Development
  contributor:
    fullname: Kaufman
– volume: 37
  start-page: 1082
  year: 2005
  end-page: 1089
  ident: bib3
  article-title: Apoptosis induced by vitamin A signaling is crucial for connecting the ureters to the bladder
  publication-title: Nat. Genet.
  contributor:
    fullname: Batourina
– volume: 84
  start-page: 127
  year: 1999
  end-page: 131
  ident: bib9
  article-title: Migration of mesonephric cells into the mammalian gonad depends on Sry
  publication-title: Mech. Dev.
  contributor:
    fullname: Capel
– volume: 175
  start-page: 1
  year: 1972
  end-page: 6
  ident: bib31
  article-title: Normal and abnormal development of the kidney
  publication-title: Anat. Embryol.
  contributor:
    fullname: Potter
– volume: 170
  start-page: 1722
  year: 2002
  end-page: 1726
  ident: bib39
  article-title: Determining the incidence of horseshoe kidney from radiographic data at a single institution
  publication-title: J. Urol.
  contributor:
    fullname: Weizer
– volume: 68
  start-page: 422
  year: 2004
  end-page: 428
  ident: bib6
  article-title: Germ cells enter meiosis in a rostro-caudal wave during development of the mouse ovary
  publication-title: Mol. Reprod. Dev.
  contributor:
    fullname: Koopman
– volume: 2
  start-page: 392
  year: 1980
  end-page: 406
  ident: bib21
  article-title: The ultrastructural development of the glomerular filtration barrier in the rat kidney: a morphometric analysis
  publication-title: J. Ultrastruct. Res.
  contributor:
    fullname: Maunsbach
– volume: 51
  start-page: 119
  year: 1975
  end-page: 139
  ident: bib20
  article-title: The ultrastructure of the developing proximal tubule in the rat kidney
  publication-title: J. Ultrastruct. Res.
  contributor:
    fullname: Larsson
– volume: 74
  start-page: 111
  year: 1998
  end-page: 120
  ident: bib2
  article-title: An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature
  publication-title: Mech. Dev.
  contributor:
    fullname: Davidson
– volume: 39
  start-page: 90
  year: 1978
  end-page: 100
  ident: bib32
  article-title: Differentiation of epithelial foot processes and filtration slits. Sequential appearance of occluding junctions, epithelial polyanion, and slit membranes in developing glomeruli
  publication-title: Lab. Invest.
  contributor:
    fullname: Farquhar
– volume: 131
  start-page: 6209
  year: 2003
  end-page: 6220
  ident: bib35
  article-title: Regulation of outgrowth and apoptosis for the terminal appendage, external genitalia, development by concerted functions of Bmp signalling
  publication-title: Development
  contributor:
    fullname: Suzuki
– volume: 71
  start-page: 445
  year: 2003
  end-page: 460
  ident: bib40
  article-title: Cellular and molecular mechanisms of development of the external genitalia
  publication-title: Differentiation
  contributor:
    fullname: Yamada
– volume: 20
  start-page: 259
  year: 2004
  end-page: 267
  ident: bib7
  article-title: Formalization of mouse embryo anatomy
  publication-title: Bioinformatics
  contributor:
    fullname: Burger
– volume: 60
  start-page: 675
  year: 2002
  end-page: 679
  ident: bib12
  article-title: Clinical and embryologic aspects of penile duplication and associated anomalies
  publication-title: Urology
  contributor:
    fullname: Gyftopoulos
– volume: 5
  start-page: 179
  year: 2004
  end-page: 185
  ident: bib22
  article-title: Expression of retinoic acid-synthesizing and –metabolizing enzymes during nephrogenesis in the rat
  publication-title: Gene Expr. Patterns
  contributor:
    fullname: Gilbert
– volume: 16
  start-page: 2557
  year: 2005
  end-page: 2564
  ident: bib15
  article-title: Nephron number, hypertension, renal disease and renal failure
  publication-title: J. Am. Soc. Nephrol.
  contributor:
    fullname: Hoy
– volume: 4
  start-page: 969
  year: 2003
  end-page: 980
  ident: bib17
  article-title: Developmental genetics of the female reproductive tract in mammals
  publication-title: Nat. Rev.
  contributor:
    fullname: Behringer
– volume: 109
  start-page: 911
  year: 1990
  end-page: 923
  ident: bib28
  article-title: Developmental expression of c-kit, a proto-oncogene encoded by the W locus
  publication-title: Development
  contributor:
    fullname: Orr-Urtreger
– volume: 128
  start-page: 4241
  year: 2001
  end-page: 4250
  ident: bib14
  article-title: Unique functions of Sonic hedgehog signaling during external genitalia development
  publication-title: Development
  contributor:
    fullname: Haraguchi
– volume: 168
  start-page: 1859
  year: 2002
  end-page: 1862
  ident: bib38
  article-title: Long-term urological outcome of patients presenting with persistent cloaca
  publication-title: J. Urol.
  contributor:
    fullname: Warne
– volume: 219
  start-page: 582
  year: 2000
  end-page: 587
  ident: bib11
  article-title: Characterisation of Crim1 expression in the developing mouse urogenital tract reveals a sexually dimorphic gonadal expression pattern
  publication-title: Dev. Dyn.
  contributor:
    fullname: Georgas
– volume: 545
  start-page: 159
  year: 2004
  end-page: 172
  ident: bib36
  article-title: Development of the mouse external genitalia: unique model of organogenesis
  publication-title: Adv. Exp. Med. Biol.
  contributor:
    fullname: Suzuki
– volume: 288
  start-page: F939
  year: 2005
  end-page: F952
  ident: bib10
  article-title: Segmental expression of notch and hairy genes in nephrogenesis
  publication-title: Am. J. Physiol. Renal Physiol.
  contributor:
    fullname: Al-Awqati
– year: 1989
  ident: bib37
  article-title: The House Mouse: Atlas of Embryonic Development
  contributor:
    fullname: Theiler
– volume: 113
  start-page: 1560
  year: 2004
  end-page: 1570
  ident: bib4
  article-title: Distal renal tubular acidosis in mice that lack the forkhead transcription factor Foxi1
  publication-title: J. Clin. Invest.
  contributor:
    fullname: Blomqvist
– volume: 7
  start-page: 958
  year: 1997
  end-page: 968
  ident: bib23
  article-title: Male-specific cell migration into the developing gonad
  publication-title: Curr. Biol.
  contributor:
    fullname: Martineau
– volume: 5
  start-page: 184
  year: 2004
  ident: bib8
  article-title: Integrating partonomic hierarchies in anatomy ontologies
  publication-title: BMC Bioinformatics
  contributor:
    fullname: Burger
– volume: 247
  start-page: 26
  year: 2002
  end-page: 46
  ident: bib30
  article-title: Sonic hedgehog signaling from the urethral epithelium controls external genital development
  publication-title: Dev. Biol.
  contributor:
    fullname: Perriton
– volume: 130
  start-page: 4751
  year: 2003
  end-page: 4759
  ident: bib27
  article-title: Crucial roles of Brn1 in distal tubule formation and function in mouse kidney
  publication-title: Development
  contributor:
    fullname: Nakai
– volume: 124
  start-page: 1293
  year: 1997
  end-page: 1299
  ident: bib33
  article-title: Differential regulation of two sets of mesonephric tubules by WT1
  publication-title: Development
  contributor:
    fullname: Saino
– volume: 1
  start-page: 309
  year: 2003
  end-page: 325
  ident: bib1
  article-title: EMAP and EMAGE: a framework for understanding spatially organized data
  publication-title: Neuroinformatics
  contributor:
    fullname: Baldock
– volume: 8
  start-page: 2543
  year: 1989
  end-page: 2550
  ident: bib34
  article-title: A family of octamer-specific proteins present during mouse embryogenesis: evidence for germline-specific expression of an Oct factor
  publication-title: EMBO J.
  contributor:
    fullname: Scholer
– volume: 221
  start-page: 201
  year: 2001
  end-page: 205
  ident: bib5
  article-title: Spatially dynamic expression of Sry in mouse genital ridges
  publication-title: Dev. Dyn.
  contributor:
    fullname: Koopman
– volume: 127
  start-page: 2471
  year: 2000
  end-page: 2479
  ident: bib13
  article-title: Molecular analysis of external genitalia formation: the role of fibroblast growth factor (Fgf) genes during genital tubercle formation
  publication-title: Development
  contributor:
    fullname: Haraguchi
– volume: 262
  start-page: 303
  year: 2003
  end-page: 312
  ident: bib25
  article-title: Sexual differentiation of germ cells in XX mouse gonads occurs in an anterior-to-posterior wave
  publication-title: Dev. Biol.
  contributor:
    fullname: Menke
– volume: 235
  start-page: 1738
  year: 2006
  end-page: 1752
  ident: bib41
  article-title: Molecular genetic cascades for external genitalia formation: an emerging organogenesis program
  publication-title: Dev. Dyn.
  contributor:
    fullname: Yamada
– volume: 44
  start-page: 622
  year: 2006
  end-page: 632
  ident: bib29
  article-title: From primordial germ cell to primordial follicle: mammalian female germ cell development
  publication-title: Genesis
  contributor:
    fullname: Pepling
– volume: 348
  start-page: 450
  year: 1990
  end-page: 452
  ident: bib19
  article-title: Expression of a candidate sex-determining gene during mouse testis differentiation
  publication-title: Nature
  contributor:
    fullname: Koopman
– volume: 235
  start-page: 1709
  year: 2006
  end-page: 1719
  ident: bib24
  article-title: Definition and spatial annotation of the dynamic secretome during early kidney development
  publication-title: Dev. Dyn.
  contributor:
    fullname: Little
– volume: 6
  start-page: 519
  year: 2006
  end-page: 538
  ident: bib26
  article-title: Differential gene expression in the developing mouse ureter
  publication-title: Gene Expr. Patterns
  contributor:
    fullname: Mitchell
– volume: 20
  start-page: 259
  year: 2004
  ident: 10.1016/j.modgep.2007.03.002_bib7
  article-title: Formalization of mouse embryo anatomy
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btg400
  contributor:
    fullname: Burger
– volume: 288
  start-page: F939
  year: 2005
  ident: 10.1016/j.modgep.2007.03.002_bib10
  article-title: Segmental expression of notch and hairy genes in nephrogenesis
  publication-title: Am. J. Physiol. Renal Physiol.
  doi: 10.1152/ajprenal.00369.2004
  contributor:
    fullname: Chen
– volume: 235
  start-page: 1738
  year: 2006
  ident: 10.1016/j.modgep.2007.03.002_bib41
  article-title: Molecular genetic cascades for external genitalia formation: an emerging organogenesis program
  publication-title: Dev. Dyn.
  doi: 10.1002/dvdy.20807
  contributor:
    fullname: Yamada
– volume: 1
  start-page: 309
  issue: 4
  year: 2003
  ident: 10.1016/j.modgep.2007.03.002_bib1
  article-title: EMAP and EMAGE: a framework for understanding spatially organized data
  publication-title: Neuroinformatics
  doi: 10.1385/NI:1:4:309
  contributor:
    fullname: Baldock
– volume: 51
  start-page: 119
  year: 1975
  ident: 10.1016/j.modgep.2007.03.002_bib20
  article-title: The ultrastructure of the developing proximal tubule in the rat kidney
  publication-title: J. Ultrastruct. Res.
  doi: 10.1016/S0022-5320(75)80013-X
  contributor:
    fullname: Larsson
– volume: 44
  start-page: 622
  year: 2006
  ident: 10.1016/j.modgep.2007.03.002_bib29
  article-title: From primordial germ cell to primordial follicle: mammalian female germ cell development
  publication-title: Genesis
  doi: 10.1002/dvg.20258
  contributor:
    fullname: Pepling
– volume: 37
  start-page: 1082
  issue: 10
  year: 2005
  ident: 10.1016/j.modgep.2007.03.002_bib3
  article-title: Apoptosis induced by vitamin A signaling is crucial for connecting the ureters to the bladder
  publication-title: Nat. Genet.
  doi: 10.1038/ng1645
  contributor:
    fullname: Batourina
– year: 1994
  ident: 10.1016/j.modgep.2007.03.002_bib18
  contributor:
    fullname: Kaufman
– volume: 262
  start-page: 303
  year: 2003
  ident: 10.1016/j.modgep.2007.03.002_bib25
  article-title: Sexual differentiation of germ cells in XX mouse gonads occurs in an anterior-to-posterior wave
  publication-title: Dev. Biol.
  doi: 10.1016/S0012-1606(03)00391-9
  contributor:
    fullname: Menke
– volume: 247
  start-page: 26
  year: 2002
  ident: 10.1016/j.modgep.2007.03.002_bib30
  article-title: Sonic hedgehog signaling from the urethral epithelium controls external genital development
  publication-title: Dev. Biol.
  doi: 10.1006/dbio.2002.0668
  contributor:
    fullname: Perriton
– volume: 5
  start-page: 179
  year: 2004
  ident: 10.1016/j.modgep.2007.03.002_bib22
  article-title: Expression of retinoic acid-synthesizing and –metabolizing enzymes during nephrogenesis in the rat
  publication-title: Gene Expr. Patterns
  doi: 10.1016/j.modgep.2004.08.005
  contributor:
    fullname: Marlier
– volume: 219
  start-page: 582
  issue: 4
  year: 2000
  ident: 10.1016/j.modgep.2007.03.002_bib11
  article-title: Characterisation of Crim1 expression in the developing mouse urogenital tract reveals a sexually dimorphic gonadal expression pattern
  publication-title: Dev. Dyn.
  doi: 10.1002/1097-0177(2000)9999:9999<::AID-DVDY1072>3.0.CO;2-I
  contributor:
    fullname: Georgas
– volume: 46
  start-page: 1161
  year: 1998
  ident: 10.1016/j.modgep.2007.03.002_bib16
  article-title: Immunohistochemical localization of peroxisomal enzymes in developing rat kidney tissues
  publication-title: J. Histochem. Cytochem.
  doi: 10.1177/002215549804601008
  contributor:
    fullname: Johkura
– volume: 235
  start-page: 1709
  year: 2006
  ident: 10.1016/j.modgep.2007.03.002_bib24
  article-title: Definition and spatial annotation of the dynamic secretome during early kidney development
  publication-title: Dev. Dyn.
  doi: 10.1002/dvdy.20740
  contributor:
    fullname: Martinez
– volume: 545
  start-page: 159
  year: 2004
  ident: 10.1016/j.modgep.2007.03.002_bib36
  article-title: Development of the mouse external genitalia: unique model of organogenesis
  publication-title: Adv. Exp. Med. Biol.
  doi: 10.1007/978-1-4419-8995-6_10
  contributor:
    fullname: Suzuki
– volume: 137
  start-page: 677
  year: 2006
  ident: 10.1016/j.modgep.2007.03.002_bib42
  article-title: Development of the mammalian female reproductive tract
  publication-title: J. Biochem.
  doi: 10.1093/jb/mvi087
  contributor:
    fullname: Yin
– volume: 16
  start-page: 2557
  year: 2005
  ident: 10.1016/j.modgep.2007.03.002_bib15
  article-title: Nephron number, hypertension, renal disease and renal failure
  publication-title: J. Am. Soc. Nephrol.
  doi: 10.1681/ASN.2005020172
  contributor:
    fullname: Hoy
– volume: 175
  start-page: 1
  year: 1972
  ident: 10.1016/j.modgep.2007.03.002_bib31
  article-title: Normal and abnormal development of the kidney
  publication-title: Anat. Embryol.
  contributor:
    fullname: Potter
– volume: 71
  start-page: 445
  year: 2003
  ident: 10.1016/j.modgep.2007.03.002_bib40
  article-title: Cellular and molecular mechanisms of development of the external genitalia
  publication-title: Differentiation
  doi: 10.1046/j.1432-0436.2003.7108001.x
  contributor:
    fullname: Yamada
– volume: 6
  start-page: 519
  year: 2006
  ident: 10.1016/j.modgep.2007.03.002_bib26
  article-title: Differential gene expression in the developing mouse ureter
  publication-title: Gene Expr. Patterns
  doi: 10.1016/j.modgep.2005.10.008
  contributor:
    fullname: Mitchell
– volume: 74
  start-page: 111
  year: 1998
  ident: 10.1016/j.modgep.2007.03.002_bib2
  article-title: An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature
  publication-title: Mech. Dev.
  doi: 10.1016/S0925-4773(98)00069-0
  contributor:
    fullname: Bard
– volume: 7
  start-page: 958
  year: 1997
  ident: 10.1016/j.modgep.2007.03.002_bib23
  article-title: Male-specific cell migration into the developing gonad
  publication-title: Curr. Biol.
  doi: 10.1016/S0960-9822(06)00415-5
  contributor:
    fullname: Martineau
– volume: 39
  start-page: 90
  year: 1978
  ident: 10.1016/j.modgep.2007.03.002_bib32
  article-title: Differentiation of epithelial foot processes and filtration slits. Sequential appearance of occluding junctions, epithelial polyanion, and slit membranes in developing glomeruli
  publication-title: Lab. Invest.
  contributor:
    fullname: Reeves
– volume: 124
  start-page: 1293
  year: 1997
  ident: 10.1016/j.modgep.2007.03.002_bib33
  article-title: Differential regulation of two sets of mesonephric tubules by WT1
  publication-title: Development
  doi: 10.1242/dev.124.7.1293
  contributor:
    fullname: Saino
– volume: 170
  start-page: 1722
  issue: 5
  year: 2002
  ident: 10.1016/j.modgep.2007.03.002_bib39
  article-title: Determining the incidence of horseshoe kidney from radiographic data at a single institution
  publication-title: J. Urol.
  doi: 10.1097/01.ju.0000092537.96414.4a
  contributor:
    fullname: Weizer
– volume: 2
  start-page: 392
  year: 1980
  ident: 10.1016/j.modgep.2007.03.002_bib21
  article-title: The ultrastructural development of the glomerular filtration barrier in the rat kidney: a morphometric analysis
  publication-title: J. Ultrastruct. Res.
  doi: 10.1016/S0022-5320(80)90074-X
  contributor:
    fullname: Larsson
– year: 1989
  ident: 10.1016/j.modgep.2007.03.002_bib37
  contributor:
    fullname: Theiler
– volume: 4
  start-page: 969
  year: 2003
  ident: 10.1016/j.modgep.2007.03.002_bib17
  article-title: Developmental genetics of the female reproductive tract in mammals
  publication-title: Nat. Rev.
  doi: 10.1038/nrg1225
  contributor:
    fullname: Kaobayashi
– volume: 168
  start-page: 1859
  issue: 4 Pt 2
  year: 2002
  ident: 10.1016/j.modgep.2007.03.002_bib38
  article-title: Long-term urological outcome of patients presenting with persistent cloaca
  publication-title: J. Urol.
  doi: 10.1097/00005392-200210020-00048
  contributor:
    fullname: Warne
– volume: 68
  start-page: 422
  issue: 4
  year: 2004
  ident: 10.1016/j.modgep.2007.03.002_bib6
  article-title: Germ cells enter meiosis in a rostro-caudal wave during development of the mouse ovary
  publication-title: Mol. Reprod. Dev.
  doi: 10.1002/mrd.20105
  contributor:
    fullname: Bullejos
– volume: 109
  start-page: 911
  year: 1990
  ident: 10.1016/j.modgep.2007.03.002_bib28
  article-title: Developmental expression of c-kit, a proto-oncogene encoded by the W locus
  publication-title: Development
  doi: 10.1242/dev.109.4.911
  contributor:
    fullname: Orr-Urtreger
– volume: 131
  start-page: 6209
  year: 2003
  ident: 10.1016/j.modgep.2007.03.002_bib35
  article-title: Regulation of outgrowth and apoptosis for the terminal appendage, external genitalia, development by concerted functions of Bmp signalling
  publication-title: Development
  doi: 10.1242/dev.00846
  contributor:
    fullname: Suzuki
– volume: 128
  start-page: 4241
  issue: 21
  year: 2001
  ident: 10.1016/j.modgep.2007.03.002_bib14
  article-title: Unique functions of Sonic hedgehog signaling during external genitalia development
  publication-title: Development
  doi: 10.1242/dev.128.21.4241
  contributor:
    fullname: Haraguchi
– volume: 221
  start-page: 201
  issue: 2
  year: 2001
  ident: 10.1016/j.modgep.2007.03.002_bib5
  article-title: Spatially dynamic expression of Sry in mouse genital ridges
  publication-title: Dev. Dyn.
  doi: 10.1002/dvdy.1134
  contributor:
    fullname: Bullejos
– volume: 60
  start-page: 675
  issue: 4
  year: 2002
  ident: 10.1016/j.modgep.2007.03.002_bib12
  article-title: Clinical and embryologic aspects of penile duplication and associated anomalies
  publication-title: Urology
  doi: 10.1016/S0090-4295(02)01874-5
  contributor:
    fullname: Gyftopoulos
– volume: 5
  start-page: 184
  issue: 1
  year: 2004
  ident: 10.1016/j.modgep.2007.03.002_bib8
  article-title: Integrating partonomic hierarchies in anatomy ontologies
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-5-184
  contributor:
    fullname: Burger
– volume: 348
  start-page: 450
  year: 1990
  ident: 10.1016/j.modgep.2007.03.002_bib19
  article-title: Expression of a candidate sex-determining gene during mouse testis differentiation
  publication-title: Nature
  doi: 10.1038/348450a0
  contributor:
    fullname: Koopman
– volume: 84
  start-page: 127
  year: 1999
  ident: 10.1016/j.modgep.2007.03.002_bib9
  article-title: Migration of mesonephric cells into the mammalian gonad depends on Sry
  publication-title: Mech. Dev.
  doi: 10.1016/S0925-4773(99)00047-7
  contributor:
    fullname: Capel
– volume: 130
  start-page: 4751
  year: 2003
  ident: 10.1016/j.modgep.2007.03.002_bib27
  article-title: Crucial roles of Brn1 in distal tubule formation and function in mouse kidney
  publication-title: Development
  doi: 10.1242/dev.00666
  contributor:
    fullname: Nakai
– volume: 113
  start-page: 1560
  issue: 11
  year: 2004
  ident: 10.1016/j.modgep.2007.03.002_bib4
  article-title: Distal renal tubular acidosis in mice that lack the forkhead transcription factor Foxi1
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI20665
  contributor:
    fullname: Blomqvist
– volume: 127
  start-page: 2471
  issue: 11
  year: 2000
  ident: 10.1016/j.modgep.2007.03.002_bib13
  article-title: Molecular analysis of external genitalia formation: the role of fibroblast growth factor (Fgf) genes during genital tubercle formation
  publication-title: Development
  doi: 10.1242/dev.127.11.2471
  contributor:
    fullname: Haraguchi
– volume: 8
  start-page: 2543
  year: 1989
  ident: 10.1016/j.modgep.2007.03.002_bib34
  article-title: A family of octamer-specific proteins present during mouse embryogenesis: evidence for germline-specific expression of an Oct factor
  publication-title: EMBO J.
  doi: 10.1002/j.1460-2075.1989.tb08392.x
  contributor:
    fullname: Scholer
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Snippet Cataloguing gene expression during development of the genitourinary tract will increase our understanding not only of this process but also of congenital...
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SubjectTerms Anatomy
Animals
Annotation
Atlas of development
Bladder
Clitoris - growth & development
Congenital defects
Endoderm - physiology
Female
Gene expression
Gene Expression Regulation, Developmental
Genital tubercle
Genitourinary development
Gonad
Kidney
Kidney development
Male
Mesoderm - physiology
Mice - embryology
Mice - genetics
Mice - growth & development
Nephrons - embryology
Nephrons - growth & development
Ontology
Ovary
Partonomic ontology
Penis - growth & development
Renal development
Reproductive development
RNA in situ hybridisation
Scrotum - growth & development
Sexual Maturation
Testis
Ureter
Urethra
Urinary development
Urogenital System - anatomy & histology
Urogenital System - growth & development
Title A high-resolution anatomical ontology of the developing murine genitourinary tract
URI https://dx.doi.org/10.1016/j.modgep.2007.03.002
https://www.ncbi.nlm.nih.gov/pubmed/17452023
https://search.proquest.com/docview/19410388
https://search.proquest.com/docview/70559008
https://pubmed.ncbi.nlm.nih.gov/PMC2117077
Volume 7
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