Next-generation sequencing of representational difference analysis products for identification of genes involved in diosgenin biosynthesis in fenugreek (Trigonella foenum-graecum)

• Published in: Planta Vol. 245; no. 5; pp. 977 - 991
• Main Authors: Ciura, Joanna, Szeliga, Magdalena, Grzesik, Michalina, Tyrka, Mirosław
• Format: Journal Article
• Language: English
• Published: Berlin/Heidelberg Springer Science + Business Media 01.05.2017; Springer Berlin Heidelberg; Springer Nature B.V
• Subjects: Acetates - metabolism; Agriculture; biochemical pathways; Biomedical and Life Sciences; Biosynthesis; Cholesterol; complementary DNA; crops; Cyclopentanes - metabolism; diosgenin; Diosgenin - metabolism; DNA, Complementary - genetics; Ecology; Fabaceae; fenugreek; Forestry; High-Throughput Nucleotide Sequencing; Life Sciences; methyl jasmonate; ontogeny; Original; ORIGINAL ARTICLE; Oxylipins - metabolism; Phytosterols - metabolism; Plant Growth Regulators - metabolism; Plant Sciences; reverse transcriptase polymerase chain reaction; sapogenins; Sequence Analysis, DNA; squalene; Transcriptome; Trigonella - genetics; Trigonella - metabolism; Trigonella foenum-graecum; unigenes; Representational difference analysis of cDNA; Steroidal saponins; Diosgenin; Transcriptome user-friendly analysis; Next-generation sequencing; Phytosterols
• DOI: 10.1007/s00425-017-2657-0
• ISSN: 0032-0935; 1432-2048

Fenugreek (Trigonella foenum-graecum L.) is a valuable medicinal and crop plant. It belongs to Fabaceae family and has a unique potential to synthesize valuable steroidal saponins, e.g., diosgenin. Elicitation (methyl jasmonate) and precursor feeding (cholesterol and squalene) were used to enhance the content of sterols and steroidal sapogenins in in vitro grown plants for representational difference analysis of cDNA (cDNA-RDA). To identify candidate genes involved in diosgenin biosynthesis, differential, factor-specific libraries were subject to the next-generation sequencing. Approximately 9.9 million reads were obtained, trimmed, and assembled into 31,491 unigenes with an average length of 291 bp. Then, functional annotation and gene ontogeny enrichment analysis was performed by aligning all-unigenes with public databases. Within the transcripts related to sterol and steroidal saponin biosynthesis, we discovered novel candidate genes of diosgenin biosynthesis and validated their expression using quantitative RT-PCR analysis. Based on these findings, we supported the idea that diosgenin is biosynthesized from cycloartenol via cholesterol. This is the first report on the next-generation sequencing of cDNA-RDA products. Analysis of the transcriptomes enriched in low copy sequences contributed substantially to our understanding of the biochemical pathways of steroid synthesis in fenugreek.